ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl07f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HAT2_USTMA (Q4P553) Histone acetyltransferase type B subunit 2 (... 32 0.59
2RAVR1_HUMAN (Q8IY67) Protein raver-1 30 2.3
3AXN1_HUMAN (O15169) Axin-1 (Axis inhibition protein 1) (hAxin) 29 5.0
4AXN1_MOUSE (O35625) Axin-1 (Axis inhibition protein 1) (Fused pr... 29 5.0
5AXN1_RAT (O70239) Axin-1 (Axis inhibition protein 1) (rAxin) 29 5.0
6MILK1_HUMAN (Q8N3F8) Molecule interacting with Rab13 (MIRab13) (... 28 6.6
7VGLG_ORSVW (Q86695) Major surface glycoprotein G (Attachment gly... 28 8.6

>HAT2_USTMA (Q4P553) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)|
          Length = 485

 Score = 32.0 bits (71), Expect = 0.59
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 82  DGGPELLFVRGDHFRAPSEKT*PWPPHWE 168
           DG PEL+FV G H   P++    W PH E
Sbjct: 424 DGPPELIFVHGGHTSRPTDLA--WSPHME 450



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>RAVR1_HUMAN (Q8IY67) Protein raver-1|
          Length = 606

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 109 GQRAAPDRRPPVLQYLPEPASLGSRGEGRKG 17
           G R A    PP  Q  P PA +G RG G +G
Sbjct: 448 GDREALGLGPPAAQLTPPPAPVGLRGSGLRG 478



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>AXN1_HUMAN (O15169) Axin-1 (Axis inhibition protein 1) (hAxin)|
          Length = 862

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 386 KLTLYCSFSFSDFESPKLCS-RNCCAILGSGLKPNVPWRNEEEE 258
           K  +Y  ++ +  ESPK+CS ++  +  G G+   +P  NE+EE
Sbjct: 203 KSDIYLEYTRTGSESPKVCSDQSSGSGTGKGISGYLPTLNEDEE 246



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>AXN1_MOUSE (O35625) Axin-1 (Axis inhibition protein 1) (Fused protein)|
          Length = 863

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 386 KLTLYCSFSFSDFESPKLCS-RNCCAILGSGLKPNVPWRNEEEE 258
           K  +Y  ++ +  ESPK+CS ++  +  G G+   +P  NE+EE
Sbjct: 203 KSDIYLEYTRTGSESPKVCSDQSSGSGTGKGMSGYLPTLNEDEE 246



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>AXN1_RAT (O70239) Axin-1 (Axis inhibition protein 1) (rAxin)|
          Length = 827

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 386 KLTLYCSFSFSDFESPKLCS-RNCCAILGSGLKPNVPWRNEEEE 258
           K  +Y  ++ +  ESPK+CS ++  +  G G+   +P  NE+EE
Sbjct: 203 KSDIYLEYTRTGSESPKVCSDQSSGSGTGKGMSGYLPTLNEDEE 246



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>MILK1_HUMAN (Q8N3F8) Molecule interacting with Rab13 (MIRab13) (MICAL-like|
           protein 1)
          Length = 863

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = -3

Query: 199 PLTP*LVATHLPNVEAKVMSFQMEP*SDLHGQRAAPDRRPPVLQY---LPEPASLGSRGE 29
           P+ P       P ++ KV + Q  P  D+HG+    +RR   L++   L E    G   E
Sbjct: 656 PVRPPAPGHGFPLIKRKVQADQYIPEEDIHGEMDTIERRLDALEHRGVLLEEKLRGGLNE 715

Query: 28  GRK 20
           GR+
Sbjct: 716 GRE 718



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>VGLG_ORSVW (Q86695) Major surface glycoprotein G (Attachment glycoprotein G)|
          Length = 263

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -3

Query: 403 SRPPFEN*HYIAHSPSQ-TSSPLSFAQEI 320
           S PP E+ H   HSP+Q T+SP +FA ++
Sbjct: 88  SLPPTEHNHNSTHSPTQGTTSPHTFAVDV 116


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,223,870
Number of Sequences: 219361
Number of extensions: 1054818
Number of successful extensions: 2800
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2800
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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