ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl07f04 |
|---|---|
| Clone Library Name | barley_pub |
>PYRC_ECOL6 (Q8FIR2) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 347 Score = 30.0 bits (66), Expect = 3.1 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = +3 Query: 105 SAPPPPLRGEAMDDWMMHLRFLSAQSVSIYSTTSTLFGIKPWVVPDLPPPALT 263 +AP L+ DDW +HLR ++ TS ++G + V+P+L PP T Sbjct: 1 TAPSQVLKIRCPDDWHLHLRD-GDMLKTVVPYTSEIYG-RAIVMPNLAPPVTT 51
>LIPB_DEIRA (Q9RWA5) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier| protein]-protein-N-lipoyltransferase) (Lipoate-protein ligase B) Length = 336 Score = 30.0 bits (66), Expect = 3.1 Identities = 25/77 (32%), Positives = 28/77 (36%) Frame = -3 Query: 338 CGDELAGVGLSGWCRRGRMPSSSHGGEGWRW*VRHHPWLDPEQSTSSRVNRYGLS*QKSQ 159 C A LS +C GR G+GWRW P L S NR G S K Sbjct: 24 CASRTAARKLSLYCSEGRTRCGMGQGKGWRWPGHRPPGL------PSPTNRVGQSVPK-- 75 Query: 158 MHHPVIHRLASQRRRWR 108 P H+ A R R Sbjct: 76 -WRPQPHKAAGGGRTIR 91
>PYRC_ECOLI (P05020) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 347 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = +3 Query: 105 SAPPPPLRGEAMDDWMMHLRFLSAQSVSIYSTTSTLFGIKPWVVPDLPPPALT 263 +AP L+ DDW +HLR ++ TS ++G + V+P+L PP T Sbjct: 1 TAPSQVLKIRRPDDWHLHLRD-GDMLKTVVPYTSEIYG-RAIVMPNLAPPVTT 51
>PYRC_ECO57 (Q8X8N8) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 347 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = +3 Query: 105 SAPPPPLRGEAMDDWMMHLRFLSAQSVSIYSTTSTLFGIKPWVVPDLPPPALT 263 +AP L+ DDW +HLR ++ TS ++G + V+P+L PP T Sbjct: 1 TAPSQVLKIRRPDDWHLHLRD-GDMLKTVVPYTSEIYG-RAIVMPNLAPPVTT 51
>GAG_FLV (P10262) Gag polyprotein [Contains: Core protein p15; Core protein| p12; Core protein p30; Core protein p10] Length = 580 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = +3 Query: 192 YSTTSTLFGIKP--WVVPDLPPPAL-TPMGR*RHPPPSAPATET 314 Y TT P WV P LPPP TP+ + P PSAP T + Sbjct: 156 YITTWRSLATDPPSWVRPFLPPPKPPTPLPQPLSPQPSAPLTSS 199
>SEM3B_MOUSE (Q62177) Semaphorin-3B precursor (Semaphorin A) (Sema A)| Length = 748 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 7/39 (17%) Frame = -3 Query: 434 C*GLGRACA*---ARTPPCPWTGRPCW----TSSRRKKR 339 C LGRACA AR P C W G C T+ RR +R Sbjct: 515 CTALGRACAECCLARDPYCAWDGSACTRFQPTAKRRFRR 553
>WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein| kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1243 Score = 29.6 bits (65), Expect = 4.0 Identities = 15/54 (27%), Positives = 25/54 (46%) Frame = +3 Query: 159 LRFLSAQSVSIYSTTSTLFGIKPWVVPDLPPPALTPMGR*RHPPPSAPATETDP 320 L SA S+++ + +L P ++ PP +P+ PPP AP + P Sbjct: 924 LSLASAFSLAVMTVAQSLLSPSPGLLSQSPPAPPSPLPSLPLPPPVAPGGQESP 977
>GAG_FSVST (P03338) Gag polyprotein [Contains: Core protein p15; Core protein| p12; Core protein p30] Length = 371 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = +3 Query: 192 YSTTSTLFGIKP--WVVPDLPPPAL-TPMGR*RHPPPSAPATET 314 Y TT P WV P LPPP TP+ + P PSAP T + Sbjct: 156 YITTWRSLATDPPSWVRPFLPPPKPPTPLPQPLSPQPSAPLTSS 199
>UCP8_SCHPO (O94685) UBA domain-containing protein 8| Length = 884 Score = 29.6 bits (65), Expect = 4.0 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 8/62 (12%) Frame = +3 Query: 159 LRFLSAQSVSIYSTTSTLFG--------IKPWVVPDLPPPALTPMGR*RHPPPSAPATET 314 LR L A+ SI + + + G IKP V P P PA TP + HPPP + Sbjct: 695 LRKLQAKIDSIIADSMSPMGTGAVNSPAIKPQVTPAPPTPAPTPAVK-HHPPPPPVRSSI 753 Query: 315 DP 320 P Sbjct: 754 SP 755
>SMRD3_MOUSE (Q6P9Z1) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily D member 3 (60 kDa BRG-1/Brm-associated factor subunit C) (BRG1-associated factor 60C) (mBAF60c) Length = 483 Score = 29.6 bits (65), Expect = 4.0 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = -1 Query: 130 PRSGGGGALSVRPSVRPAGPLALRRRELPAWGQAQA 23 P S G+ +VRP + PAG R+R P GQ+QA Sbjct: 46 PGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQA 81
>SMRD3_HUMAN (Q6STE5) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily D member 3 (60 kDa BRG-1/Brm-associated factor subunit C) (BRG1-associated factor 60C) Length = 483 Score = 29.6 bits (65), Expect = 4.0 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = -1 Query: 130 PRSGGGGALSVRPSVRPAGPLALRRRELPAWGQAQA 23 P S G+ +VRP + PAG R+R P GQ+QA Sbjct: 46 PGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQA 81
>GAG_FSVMD (P03340) Gag polyprotein [Contains: Core protein p15; Core protein| p12; Core protein p30; Core protein p10] Length = 536 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = +3 Query: 192 YSTTSTLFGIKP--WVVPDLPPPAL-TPMGR*RHPPPSAPATET 314 Y TT P WV P LPPP TP+ + P PSAP T + Sbjct: 159 YITTWRSLATDPPSWVRPFLPPPKPPTPLPQPLSPQPSAPPTSS 202
>GAG_FSVHZ (P04322) Gag polyprotein [Contains: Core protein p15; Core protein| p12; Core protein p30] (Fragment) Length = 414 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = +3 Query: 192 YSTTSTLFGIKP--WVVPDLPPPAL-TPMGR*RHPPPSAPATET 314 Y TT P WV P LPPP TP+ + P PSAP T + Sbjct: 156 YITTWRSLATDPPSWVRPFLPPPKPPTPLPQPLSPQPSAPLTSS 199
>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) Length = 1248 Score = 29.3 bits (64), Expect = 5.2 Identities = 26/76 (34%), Positives = 32/76 (42%) Frame = +3 Query: 93 GRTESAPPPPLRGEAMDDWMMHLRFLSAQSVSIYSTTSTLFGIKPWVVPDLPPPALTPMG 272 G T +PPPPL G+A L + V I S +S G +P PPP L Sbjct: 614 GGTAISPPPPLSGDATIPPPPPL----PEGVGIPSPSSLPGGT---AIP--PPPPLPGSA 664 Query: 273 R*RHPPPSAPATETDP 320 R PPP P + P Sbjct: 665 RIPPPPPPLPGSAGIP 680
>CAC1I_RAT (Q9Z0Y8) Voltage-dependent T-type calcium channel alpha-1I subunit| (Voltage-gated calcium channel alpha subunit Cav3.3) (CaVT.3) Length = 2201 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/38 (36%), Positives = 16/38 (42%) Frame = +2 Query: 194 LYY*YSVRDQAMGGAGPTTSSPHPHGKMKASAPFCTSH 307 LY R QAMG P + P PH K + C H Sbjct: 454 LYQALQNRRQAMGPGTPAPAKPGPHAKEPSHCKLCPRH 491
>WASF1_MOUSE (Q8R5H6) Wiskott-Aldrich syndrome protein family member 1| (WASP-family protein member 1) (WAVE-1 protein) Length = 559 Score = 29.3 bits (64), Expect = 5.2 Identities = 20/68 (29%), Positives = 26/68 (38%) Frame = +3 Query: 99 TESAPPPPLRGEAMDDWMMHLRFLSAQSVSIYSTTSTLFGIKPWVVPDLPPPALTPMGR* 278 T PPPPL ++S S +++ P VP PPP T + Sbjct: 323 TPPPPPPPL----------------PSALSTSSLRASMTSTPPPPVPPPPPPPATALQAP 366 Query: 279 RHPPPSAP 302 PPP AP Sbjct: 367 AVPPPPAP 374
>WASF1_HUMAN (Q92558) Wiskott-Aldrich syndrome protein family member 1| (WASP-family protein member 1) (WAVE-1 protein) (Verprolin homology domain-containing protein 1) Length = 559 Score = 29.3 bits (64), Expect = 5.2 Identities = 20/68 (29%), Positives = 26/68 (38%) Frame = +3 Query: 99 TESAPPPPLRGEAMDDWMMHLRFLSAQSVSIYSTTSTLFGIKPWVVPDLPPPALTPMGR* 278 T PPPPL ++S S +++ P VP PPP T + Sbjct: 323 TPPPPPPPL----------------PSALSTSSLRASMTSTPPPPVPPPPPPPATALQAP 366 Query: 279 RHPPPSAP 302 PPP AP Sbjct: 367 AVPPPPAP 374
>TSP2_BOVIN (Q95116) Thrombospondin-2 precursor (Corticotropin-induced secreted| protein) (CISP) Length = 1170 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/59 (33%), Positives = 24/59 (40%) Frame = -3 Query: 434 C*GLGRACA*ARTPPCPWTGRPCWTSSRRKKRCGDELAGVGLSGWCRRGRMPSSSHGGE 258 C G GR + PPCP GR W+ C AG G+ R P HGG+ Sbjct: 474 CKGSGRETKACQGPPCPVDGR--WSPWSPWSACTVTCAG-GIRERTRVCNSPEPQHGGK 529
>PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subunit-like protein| ST- Length = 1019 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/36 (50%), Positives = 18/36 (50%), Gaps = 4/36 (11%) Frame = +1 Query: 265 PWEDEGIRP-LLHQPLRPTPASSS---PHRFFRRDE 360 PW DEG RP HQ L P P S PHR R E Sbjct: 959 PWLDEGHRPEAPHQSLHPGPGDPSEQHPHRPNRATE 994
>VGLD_BHV1S (Q08100) Glycoprotein D precursor (Glycoprotein IV)| Length = 417 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = -1 Query: 154 IIQSSIASPRSGGGGALSVRPSVRPAGPLALRRRELPAWGQAQASDPP 11 I ++IA + GA V R AGPL + ++LPA+G S P Sbjct: 369 IAAAAIACVAAAAAGAYFVYTRRRGAGPLPRKPKKLPAFGNVNYSALP 416
>VGLD_BHV1P (P24906) Glycoprotein D precursor (Glycoprotein IV)| Length = 417 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = -1 Query: 154 IIQSSIASPRSGGGGALSVRPSVRPAGPLALRRRELPAWGQAQASDPP 11 I ++IA + GA V R AGPL + ++LPA+G S P Sbjct: 369 IAAAAIACVAAAAAGAYFVYTRRRGAGPLPRKPKKLPAFGNVNYSALP 416
>AOX4_AERPE (Q9YDX4) Heme-copper oxidase subunit 4 (EC 1.9.3.-) (Heme-copper| oxidase subunit IV) Length = 288 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 4/39 (10%) Frame = +1 Query: 211 CSGSSHGWCRTYH----LQPSPPWEDEGIRPLLHQPLRP 315 C H T H L PS PW +EG P H PLRP Sbjct: 43 CQRRPHKHYNTVHWDDALHPSIPWCEEGQLP--HNPLRP 79
>CAAL_PSEAE (Q9I1T4) Carboxylate-amine ligase PA2181 (EC 6.3.-.-)| Length = 377 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/65 (24%), Positives = 24/65 (36%) Frame = -3 Query: 317 VGLSGWCRRGRMPSSSHGGEGWRW*VRHHPWLDPEQSTSSRVNRYGLS*QKSQMHHPVIH 138 VG W +G W +H L E S + ++ RY + Q HP + Sbjct: 301 VGAGDWLEMAWRQCRPQARQGNEWAYQHACGLLEETSAARQLRRYRRLREAGQERHPALR 360 Query: 137 RLASQ 123 RL + Sbjct: 361 RLVEE 365
>XYLB_STRCO (Q9RK00) Xylulose kinase (EC 2.7.1.17) (Xylulokinase)| Length = 481 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = -3 Query: 359 SSRRKKRCGDELAGVGLSGWCRR-GRMPSSSHGGEGWRW*VRHHP 228 S+ + +R DEL G W R G +PS+S W W H P Sbjct: 105 SAPQARRLIDELGGA--KAWAERTGSVPSASFTVTKWAWLTEHEP 147
>KCND3_RAT (Q62897) Potassium voltage-gated channel subfamily D member 3| (Voltage-gated potassium channel subunit Kv4.3) Length = 655 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +3 Query: 249 PPALTPMGR*RHPPPSAPATETD 317 PPALTP G R PPP++P T+ Sbjct: 620 PPALTPEGESR-PPPASPGPNTN 641
>KCND3_RABIT (Q9TTT5) Potassium voltage-gated channel subfamily D member 3| (Voltage-gated potassium channel subunit Kv4.3) Length = 655 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +3 Query: 249 PPALTPMGR*RHPPPSAPATETD 317 PPALTP G R PPP++P T+ Sbjct: 620 PPALTPEGETR-PPPASPGPNTN 641
>KCND3_MOUSE (Q9Z0V1) Potassium voltage-gated channel subfamily D member 3| (Voltage-gated potassium channel subunit Kv4.3) Length = 655 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +3 Query: 249 PPALTPMGR*RHPPPSAPATETD 317 PPALTP G R PPP++P T+ Sbjct: 620 PPALTPEGESR-PPPASPGPNTN 641
>KCND3_HUMAN (Q9UK17) Potassium voltage-gated channel subfamily D member 3| (Voltage-gated potassium channel subunit Kv4.3) Length = 655 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +3 Query: 249 PPALTPMGR*RHPPPSAPATETD 317 PPALTP G R PPP++P T+ Sbjct: 620 PPALTPEGESR-PPPASPGPNTN 641 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,862,170 Number of Sequences: 219361 Number of extensions: 1286998 Number of successful extensions: 5577 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 4869 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5545 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
