ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl07e10 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 155 bits (393), Expect = 2e-38 Identities = 79/79 (100%), Positives = 79/79 (100%) Frame = +1 Query: 106 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST 285 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST Sbjct: 1 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST 60 Query: 286 AVDQDNGGRGKVGAEAELE 342 AVDQDNGGRGKVGAEAELE Sbjct: 61 AVDQDNGGRGKVGAEAELE 79
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 136 bits (342), Expect = 1e-32 Identities = 65/78 (83%), Positives = 74/78 (94%) Frame = +1 Query: 109 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 288 +LGG+IDT+TG++K +RLKGTVVLMRKNVLDLNDFGAT+IDG+GEFLGKGVTCQLISSTA Sbjct: 1 MLGGIIDTITGSSKQSRLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGKGVTCQLISSTA 60 Query: 289 VDQDNGGRGKVGAEAELE 342 VD +NG RGKVGAEA LE Sbjct: 61 VDPNNGNRGKVGAEASLE 78
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 115 bits (289), Expect = 2e-26 Identities = 56/78 (71%), Positives = 68/78 (87%) Frame = +1 Query: 109 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 288 +LGG+I LTG NK+ARLKG++VLMRKN LD+NDFGAT+IDGI EFLG+GVTCQL+SS+ Sbjct: 1 MLGGIIGGLTG-NKNARLKGSLVLMRKNALDINDFGATVIDGISEFLGRGVTCQLVSSSL 59 Query: 289 VDQDNGGRGKVGAEAELE 342 VD +NG RG+VG EA LE Sbjct: 60 VDPNNGNRGRVGTEASLE 77
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 82.0 bits (201), Expect = 3e-16 Identities = 40/78 (51%), Positives = 55/78 (70%) Frame = +1 Query: 109 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 288 +LGGL D LTG N + ++KG VLM + +LD DF A+++D + E G +TCQL+S+T Sbjct: 1 MLGGLKDKLTGKNGN-KIKGLAVLMSRKLLDPRDFTASLLDNVHEVFGNSITCQLVSATV 59 Query: 289 VDQDNGGRGKVGAEAELE 342 DQ+N GRG VG+EA LE Sbjct: 60 ADQNNEGRGIVGSEANLE 77
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 80.5 bits (197), Expect = 1e-15 Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 3/81 (3%) Frame = +1 Query: 109 LLGGLIDTLTGANKSA---RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLIS 279 + G L D LTG ++KGTVVLM+KNVLD NDF A+ +D + EFLG +T +L+S Sbjct: 1 MFGELRDLLTGGGNETTTKKVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNKITLRLVS 60 Query: 280 STAVDQDNGGRGKVGAEAELE 342 S D +NG +GK+G A LE Sbjct: 61 SDVTDSENGSKGKLGKAAHLE 81
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 77.4 bits (189), Expect = 8e-15 Identities = 42/85 (49%), Positives = 57/85 (67%), Gaps = 6/85 (7%) Frame = +1 Query: 106 MLLGGLIDTLTGANKSA----RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLG--KGVTC 267 M + G D LTG NK A R++GT VL++K+VL L DF A+++DG+ LG +GV Sbjct: 1 MQVQGFFDRLTGRNKEAWKEGRIRGTAVLVKKDVLGLGDFHASLLDGVHNILGHKEGVAF 60 Query: 268 QLISSTAVDQDNGGRGKVGAEAELE 342 +L+S+TA D NGGRGK+G A LE Sbjct: 61 RLVSATARDPSNGGRGKLGKPAHLE 85
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 67.0 bits (162), Expect = 1e-11 Identities = 36/79 (45%), Positives = 54/79 (68%) Frame = +1 Query: 106 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST 285 M LGG++D + G + ++KG V+LM+KNVLD + GA+++DGI + LG+ V+ QLIS Sbjct: 1 MSLGGIVDAILGKDDRPKVKGRVILMKKNVLDFINIGASVVDGISDLLGQKVSIQLISG- 59 Query: 286 AVDQDNGGRGKVGAEAELE 342 +V+ D G GK+ A LE Sbjct: 60 SVNYD-GLEGKLSNPAYLE 77
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 61.6 bits (148), Expect = 5e-10 Identities = 37/78 (47%), Positives = 48/78 (61%) Frame = +1 Query: 109 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 288 L+GGLI G + S ++KGTVV+M+KN LD D ++ D I E LG+ V+ QLISS Sbjct: 5 LVGGLIG---GHHDSKKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSVQ 61 Query: 289 VDQDNGGRGKVGAEAELE 342 D NG +GK A LE Sbjct: 62 SDPANGLQGKHSNPAYLE 79
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 57.8 bits (138), Expect = 7e-09 Identities = 38/84 (45%), Positives = 47/84 (55%), Gaps = 18/84 (21%) Frame = +1 Query: 145 NKSARLKGTVVLMRKNVLDLN--------------DFGATII----DGIGEFLGKGVTCQ 270 NK +++GTVVLMRKNVLD N D G II DG+ FLG+ V+ Q Sbjct: 10 NKGHKIRGTVVLMRKNVLDFNTIVSIGGGNVHGVIDSGINIIGSTLDGLTAFLGRSVSLQ 69 Query: 271 LISSTAVDQDNGGRGKVGAEAELE 342 LIS+T D G+GKVG + LE Sbjct: 70 LISAT--KSDANGKGKVGKDTFLE 91
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 55.1 bits (131), Expect = 4e-08 Identities = 31/68 (45%), Positives = 41/68 (60%) Frame = +1 Query: 139 GANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAVDQDNGGRGK 318 G + S ++KGTVV+M KNVLD D ++ I + LG+ V+ QLISS D NG +GK Sbjct: 12 GHDDSKKVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQKVSFQLISSVQGDPTNGLQGK 71 Query: 319 VGAEAELE 342 A LE Sbjct: 72 HSNPAYLE 79
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 54.7 bits (130), Expect = 6e-08 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 13/79 (16%) Frame = +1 Query: 145 NKSARLKGTVVLMRKNVLDLN-------------DFGATIIDGIGEFLGKGVTCQLISST 285 N+ ++KGTVVLMRKNVLD+N D + +D + FLG+ V+ QLIS+T Sbjct: 10 NRGHKIKGTVVLMRKNVLDINSLTTVGGVIGQGFDILGSTVDNLTAFLGRSVSLQLISAT 69 Query: 286 AVDQDNGGRGKVGAEAELE 342 D G+GK+G LE Sbjct: 70 KPDAT--GKGKLGKATFLE 86
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 54.3 bits (129), Expect = 7e-08 Identities = 30/62 (48%), Positives = 42/62 (67%) Frame = +1 Query: 157 RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAVDQDNGGRGKVGAEAE 336 ++KGTVVLM KN L++N G+ + D + FLG+ V+ QLIS+T D G+GKVG + Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAV-DNLNAFLGRSVSLQLISATKADAH--GKGKVGKDTF 63 Query: 337 LE 342 LE Sbjct: 64 LE 65
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 52.4 bits (124), Expect = 3e-07 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 13/91 (14%) Frame = +1 Query: 109 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLN-------------DFGATIIDGIGEFL 249 +LGGL+ ++ ++KGTVVLMRKNVL +N D + +D + FL Sbjct: 1 MLGGLL------HRGHKIKGTVVLMRKNVLHVNSVTSVGGIIGQGLDLVGSTLDTLTAFL 54 Query: 250 GKGVTCQLISSTAVDQDNGGRGKVGAEAELE 342 G+ V+ QLIS+T D + G+GK+G LE Sbjct: 55 GRPVSLQLISATKADAN--GKGKLGKATFLE 83
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 50.4 bits (119), Expect = 1e-06 Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 20/85 (23%) Frame = +1 Query: 148 KSARLKGTVVLMRKNVLDLN--------------------DFGATIIDGIGEFLGKGVTC 267 + +LKGTV+LM+KNVLD+N +IID FLG+ V Sbjct: 8 RGQKLKGTVILMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGRSVRL 67 Query: 268 QLISSTAVDQDNGGRGKVGAEAELE 342 +LIS+T D G+GKV EA LE Sbjct: 68 RLISATVADA--SGKGKVSKEAFLE 90
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 49.7 bits (117), Expect = 2e-06 Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 22/88 (25%) Frame = +1 Query: 145 NKSARLKGTVVLMRKNVLDLNDF------------------GATIIDGI----GEFLGKG 258 +K ++KGTVVLM KNVLD N G +++ G+ FLG+ Sbjct: 6 DKGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRN 65 Query: 259 VTCQLISSTAVDQDNGGRGKVGAEAELE 342 ++ QLIS+T D G GKVG E LE Sbjct: 66 ISMQLISAT--QTDGSGNGKVGKEVYLE 91
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 47.4 bits (111), Expect = 9e-06 Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 22/88 (25%) Frame = +1 Query: 145 NKSARLKGTVVLMRKNVLDLNDFGAT----------------------IIDGIGEFLGKG 258 N+ ++KGTVVLM KNV D N+F +T I+DG + Sbjct: 6 NRGHKIKGTVVLMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRN 65 Query: 259 VTCQLISSTAVDQDNGGRGKVGAEAELE 342 + QLIS+T D G GKVG + LE Sbjct: 66 IAIQLISATKT--DGLGNGKVGKQTFLE 91
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 47.0 bits (110), Expect = 1e-05 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 13/77 (16%) Frame = +1 Query: 148 KSARLKGTVVLMRKNVLDLNDF---GATIIDGIGEFLGKGV----------TCQLISSTA 288 K ++KGT+V+M+KNVLD+N G + G+G F+G V + QLIS+T Sbjct: 7 KGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLG-FIGSAVDALTFAATKISIQLISATK 65 Query: 289 VDQDNGGRGKVGAEAEL 339 D GG+GK+G L Sbjct: 66 AD---GGKGKIGKSTNL 79
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 47.0 bits (110), Expect = 1e-05 Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 18/80 (22%) Frame = +1 Query: 157 RLKGTVVLMRKNVLDLNDFG------------------ATIIDGIGEFLGKGVTCQLISS 282 ++KGTVVLMRKNVLD N + +D + FLG+ V QLIS+ Sbjct: 18 KIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGSTLDNLTAFLGRSVALQLISA 77 Query: 283 TAVDQDNGGRGKVGAEAELE 342 T + G+GKVG + LE Sbjct: 78 TKPLAN--GKGKVGKDTFLE 95
>OAR_MYXXA (P38370) Protein oar precursor| Length = 1061 Score = 31.2 bits (69), Expect = 0.67 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +1 Query: 130 TLTGANKSARLKGTVVLMRKNVLDLNDFGATI 225 TL G K R +GTV+ + + +L DFGAT+ Sbjct: 261 TLEGTRKQIREEGTVITGQNQLQNLGDFGATL 292
>WEB1_YEAST (P38968) Protein WEB1 (Protein transport protein SEC31)| Length = 1273 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Frame = -2 Query: 329 SAPTFPRPPLSWS-TAVELISWQVTPLPRNSPMPSMMVAPKSLRSS 195 +A T P PPLS + ++V ++S PL +NS +PS++ +S R+S Sbjct: 960 AASTMPPPPLSRAPSSVSMVS--PPPLHKNSRVPSLVATSESPRAS 1003
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +3 Query: 69 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 194 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 315 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 356 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +3 Query: 69 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 194 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 292 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 333 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +3 Query: 69 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 194 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 269 GGYQQRPPGQQQGGHEQGRQGQEGGYQQRPSGQQQGGHQQGR 310 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +3 Query: 69 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 194 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 223 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGR 264 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +3 Query: 69 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 194 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 200 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 241 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +3 Query: 69 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 194 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 177 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGR 218 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +3 Query: 69 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 194 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 154 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 195 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +3 Query: 69 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 194 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 246 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHEQGR 287 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +3 Query: 69 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 194 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 131 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGR 172
>SCRT2_HUMAN (Q9NQ03) Transcriptional repressor scratch 2 (Scratch homolog 2| zinc finger protein) Length = 307 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/38 (39%), Positives = 16/38 (42%) Frame = +3 Query: 69 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAH 182 G + RRGG DA G D GG R GG H Sbjct: 116 GRSRRRRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGH 153
>WSCK_DROME (P83097) Putative tyrosine-protein kinase Wsck precursor (EC| 2.7.10.1) Length = 791 Score = 28.1 bits (61), Expect = 5.6 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +1 Query: 118 GLIDTLTGANKSARLKGTVVLMRKNVLDLNDFG-ATIIDGIGEFLGKGVTCQLISS 282 GL+ TL G K+ +GT ++V L+DF AT G + VTC + S Sbjct: 362 GLVSTLEGVTKTMYSRGT---HDQHVTSLDDFSYATFEKGQSSVVALAVTCVIFGS 414
>VIV_ORYSA (P37398) Protein viviparous homolog| Length = 728 Score = 28.1 bits (61), Expect = 5.6 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 11/56 (19%) Frame = +3 Query: 63 LVGAVKARRGGQEQ-DAAGRADRHPHGGEQE-------RPA---QGHGGAHAQERA 197 L+ VK RR QEQ +++G +H HG ++ +PA G GG + E A Sbjct: 632 LIRGVKVRRAAQEQGNSSGAVGKHKHGSPEKPGVSSNTKPAGAEDGTGGDDSPEAA 687
>NPAS3_HUMAN (Q8IXF0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of| PAS protein 6) (MOP6) Length = 933 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -2 Query: 260 TPLPRNSPMPSMMVAPKSLRSSTFLRMSTTV 168 TP P S PS++ +L S F+RM +T+ Sbjct: 241 TPEPVESTSPSLLTTDNTLERSFFIRMKSTL 271
>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 852 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +3 Query: 78 KARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQE 191 + +RGG E++ + H ++E +GHG + +QE Sbjct: 661 RVKRGGSEEEEEQKGTHHHSLEDEEDEEEGHGRSLSQE 698
>DOF52_ARATH (Q93ZL5) Dof zinc finger protein DOF5.2 (AtDOF5.2)| Length = 457 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -2 Query: 323 PTFPRPPLSWSTAVELISWQVTP 255 P FP PP +W A +SW + P Sbjct: 286 PCFPGPPPTWPYAWNGVSWTILP 308
>SCA4_RICAU (Q9AJ64) Antigenic heat-stable 120 kDa protein (PS120) (120 kDa| antigen) (Protein PS 120) (Fragment) Length = 991 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Frame = +1 Query: 88 EEAKNKMLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDF-GATIIDGIGEFLGKGVT 264 ++ + + G+ DT+ +N S + KGT+++ + ++ ++ A +G L KGV Sbjct: 526 DDTSRAVAIDGITDTVIKSNLSTKDKGTMLIAVGDKVNASELSNAEKQQLLGSVLKKGVE 585 Query: 265 CQLIS 279 Q++S Sbjct: 586 TQVLS 590
>GEI8_CAEEL (P34333) Gex-3-interacting protein 8| Length = 1780 Score = 27.3 bits (59), Expect = 9.6 Identities = 18/41 (43%), Positives = 21/41 (51%) Frame = -2 Query: 341 SSSASAPTFPRPPLSWSTAVELISWQVTPLPRNSPMPSMMV 219 SSSASAP F +PP + S A TP+ MPS V Sbjct: 1630 SSSASAPQFLQPPAAASIAAP------TPISTPHAMPSPSV 1664
>CI040_MOUSE (Q8VCE4) Protein C9orf40 homolog| Length = 163 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Frame = +3 Query: 51 VLVPLVGAVKARRGG----QEQDAAGRADRHPHGGEQERPAQGHGG 176 ++ A + RRGG QE R P GEQE P GG Sbjct: 49 IMAEPASAPRKRRGGGDDRQELQGCSREPGEPPPGEQEEPRAAGGG 94
>CSP_PLAKU (P04922) Circumsporozoite protein precursor (CS)| Length = 351 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +3 Query: 69 GAVKARRGGQEQDAAGRADRHPHGGEQ-ERPAQGHGG 176 G A G EQ AAG P G + E+PA G GG Sbjct: 187 GEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGG 223 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +3 Query: 69 GAVKARRGGQEQDAAGRADRHPHGGEQ-ERPAQGHGG 176 G A G EQ AAG P G + E+PA G GG Sbjct: 160 GEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGG 196 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +3 Query: 69 GAVKARRGGQEQDAAGRADRHPHGGEQ-ERPAQGHGG 176 G A G EQ AAG P G + E+PA G GG Sbjct: 106 GEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGG 142
>SDHD_BURPS (Q63IF8) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine| deaminase) (DSD) Length = 445 Score = 27.3 bits (59), Expect = 9.6 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Frame = +3 Query: 39 VKNSVLVPLVGAVKARRGGQEQDAAGR--ADRHP-HGGEQERPAQGHGGAHAQ 188 VK +P+ G++KAR G E A A+RH G + +R A G A A+ Sbjct: 98 VKRDDALPVAGSIKARGGFHEVLALAESIAERHGLAGADTDRRALASGAARAR 150
>CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1711 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +1 Query: 97 KNKMLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDG 234 K+K LGGL G +++ RLK L+ K ++D +I G Sbjct: 596 KDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITG 641
>RL2_XANCP (Q8PC46) 50S ribosomal protein L2| Length = 275 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = +3 Query: 78 KARRGGQE--QDAAGRADRHPHGGEQERPAQGH 170 K RRG + + AA A+ HPHGG + + QG+ Sbjct: 211 KRRRGVRPTVRGAAMNANDHPHGGGEAKAGQGN 243
>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1709 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +1 Query: 97 KNKMLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDG 234 K+K LGGL G +++ RLK L+ K ++D +I G Sbjct: 598 KDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITG 643 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,351,140 Number of Sequences: 219361 Number of extensions: 684875 Number of successful extensions: 2710 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 2512 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2683 length of database: 80,573,946 effective HSP length: 89 effective length of database: 61,050,817 effective search space used: 1465219608 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
