ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl07e06 |
|---|---|
| Clone Library Name | barley_pub |
>MRP6_MOUSE (Q9R1S7) Multidrug resistance-associated protein 6 (ATP-binding| cassette sub-family C member 6) Length = 1498 Score = 30.8 bits (68), Expect = 0.81 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Frame = +1 Query: 220 SYHRSNGHSACASAIFALWHPACTGMCSHAGHGSYHSDASE--VRSHRSSRYPL 375 S R N S + W +C G+ H GH S + +E ++ RS R PL Sbjct: 244 SLGRENSSEELVSQLEREWRRSCNGLPGHKGHSSVGAPETEAFLQPERSQRGPL 297
>IPHP_NOSCO (Q05918) Tyrosine-protein phosphatase precursor (EC 3.1.3.48)| Length = 294 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/57 (29%), Positives = 24/57 (42%) Frame = +2 Query: 218 HHIIVAMAIPXXXXXXXXXXXXXAPECVATPDMAPTTLMQVKSDLIDPHGILSGWSP 388 HH +A+A+ AP+ VAT AP VK D HG++ +P Sbjct: 4 HHANLALALMLGLSSSATAVAADAPQAVATKAAAP----NVKPVAADAHGVIPDGAP 56
>YJV7_YEAST (P40893) Hypothetical 22.0 kDa protein in HXT11-HXT8 intergenic| region Length = 198 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = -3 Query: 305 WLHIPVQAGCQRAKIAEAQAEWPLLR*YDATV*TTKGRLTYKIAATPELG 156 WL + V+ G R +++ + WPL+R A T+ L +A TPE G Sbjct: 128 WLRVTVEKGVLRIQVSSDKKTWPLVR--LAPFPTSDHYLVGPMACTPERG 175
>V1A_BBMV (Q00020) Protein 1A [Includes: ATP-dependent helicase (EC 3.6.1.-);| Methyltransferase] Length = 966 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = -1 Query: 166 RSWEDVYKPPLLWCGRSLSCKKGAKRSY 83 + W + +K L WCGR++S + G R++ Sbjct: 418 KGWANHFKTRLWWCGRTVSTEGGFLRNF 445
>POLG_POWVL (Q04538) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3415 Score = 28.1 bits (61), Expect = 5.3 Identities = 26/105 (24%), Positives = 35/105 (33%), Gaps = 12/105 (11%) Frame = +1 Query: 115 GSYHTTAMGVYTHLPNSGVAAIL*VNLPFVVYTVASYHRSNGHSACASAIFALWHPACT- 291 G H M V+ + V +P YH +GH C + L T Sbjct: 523 GPPHAVKMDVFNLGDQTAVLLKSLAGVPLASVEGQKYHLKSGHVTCDVGLEKLKLKGTTY 582 Query: 292 GMCSHA-----------GHGSYHSDASEVRSHRSSRYPLRLVAGG 393 MC A GH + + S S + R P+R VA G Sbjct: 583 SMCDKAKFKWKRVPVDSGHDTVVMEVSYTGSDKPCRIPVRAVAHG 627
>ERR1_HUMAN (P11474) Steroid hormone receptor ERR1 (Estrogen-related receptor,| alpha) (ERR-alpha) (Estrogen receptor-like 1) Length = 519 Score = 28.1 bits (61), Expect = 5.3 Identities = 9/15 (60%), Positives = 10/15 (66%) Frame = -1 Query: 166 RSWEDVYKPPLLWCG 122 R+WED KP WCG Sbjct: 17 RAWEDAQKPQSAWCG 31
>POLB_CHPVE (Q04350) ORFB polyprotein [Contains: Papain-like protease p48 (EC| 3.4.22.-); Putative RNA-directed RNA polymerase/Helicase (EC 2.7.7.48) (EC 3.6.1.-)] Length = 3165 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -3 Query: 302 LHIPVQAGCQRAKIAEAQAEWPLL 231 LH+P +G A+++ A+ EWP L Sbjct: 159 LHLPASSGLTTAQVSVAKLEWPPL 182
>IASPP_HUMAN (Q8WUF5) RelA-associated inhibitor (Inhibitor of ASPP protein)| (Protein iASPP) (PPP1R13B-like protein) (NFkB-interacting protein 1) Length = 828 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/54 (29%), Positives = 25/54 (46%) Frame = -1 Query: 172 LPRSWEDVYKPPLLWCGRSLSCKKGAKRSYQTPTCSVYQSQGMCWAPTSENAIL 11 LPRSW+ V + P+ S +GA R P +++ Q W + A+L Sbjct: 342 LPRSWQPVSRIPM---PPSSPQPRGAPRQRPIPLSMIFKLQNAFWEHGASRAML 392
>PCRA_MYCTU (P0A5A3) ATP-dependent DNA helicase pcrA (EC 3.6.1.-)| Length = 771 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/31 (32%), Positives = 20/31 (64%) Frame = +2 Query: 305 TPDMAPTTLMQVKSDLIDPHGILSGWSPEAD 397 +P + + +K++LIDPH L+G + ++D Sbjct: 152 SPRLLANAISNLKNELIDPHQALAGLTEDSD 182
>PCRA_MYCBO (P0A5A4) ATP-dependent DNA helicase pcrA (EC 3.6.1.-)| Length = 771 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/31 (32%), Positives = 20/31 (64%) Frame = +2 Query: 305 TPDMAPTTLMQVKSDLIDPHGILSGWSPEAD 397 +P + + +K++LIDPH L+G + ++D Sbjct: 152 SPRLLANAISNLKNELIDPHQALAGLTEDSD 182
>COX3_OENBE (P08745) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 265 Score = 27.7 bits (60), Expect = 6.9 Identities = 21/60 (35%), Positives = 29/60 (48%) Frame = +1 Query: 52 DSDTQSR*AFDNSFLPPFCSLGSYHTTAMGVYTHLPNSGVAAIL*VNLPFVVYTVASYHR 231 +S S D S P SLG+ TT GV P G A +L + L F++YT+ + R Sbjct: 3 ESQRHSYHLVDPSPWPISGSLGALATTVGGVMYMHPFQGGATLLSLGLIFLLYTMFVWWR 62
>PLSC_SALTY (P0A257) 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC| 2.3.1.51) (1-AGP acyltransferase) (1-AGPAT) (Lysophosphatidic acid acyltransferase) (LPAAT) Length = 245 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +2 Query: 14 YCIFTSRSPAHSLTLIHRAGRRLITPFCPLF 106 YC+F+ R+P H T H GR PLF Sbjct: 24 YCLFSPRNPKHVATFGHMFGR-----LAPLF 49
>PLSC_SALTI (P0A258) 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC| 2.3.1.51) (1-AGP acyltransferase) (1-AGPAT) (Lysophosphatidic acid acyltransferase) (LPAAT) Length = 245 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +2 Query: 14 YCIFTSRSPAHSLTLIHRAGRRLITPFCPLF 106 YC+F+ R+P H T H GR PLF Sbjct: 24 YCLFSPRNPKHVATFGHMFGR-----LAPLF 49
>PLSC_ECOLI (P26647) 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC| 2.3.1.51) (1-AGP acyltransferase) (1-AGPAT) (Lysophosphatidic acid acyltransferase) (LPAAT) Length = 245 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +2 Query: 14 YCIFTSRSPAHSLTLIHRAGRRLITPFCPLF 106 YC+F+ R+P H T H GR PLF Sbjct: 24 YCLFSPRNPKHVATFGHMFGR-----LAPLF 49
>PURA_HELPY (P56137) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 411 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Frame = -1 Query: 373 EDTVRIDEIGLHLHQSGRSHVRRGYTFRCKQDAKEQR*QK----RKRNGHCYDDMMQLCK 206 E+ +++ L S R+HV Y K+DA +++ Q +K G CY+D M Sbjct: 80 EEISAFEDLENRLFVSDRAHVILPY--HAKKDAFKEKSQNIGTTKKGIGPCYEDKMARSG 137 Query: 205 LQRGD 191 ++ GD Sbjct: 138 IRMGD 142
>DLX2_MOUSE (P40764) Homeobox protein DLX-2 (Homeobox protein TES-1)| Length = 332 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/58 (29%), Positives = 28/58 (48%) Frame = +1 Query: 157 PNSGVAAIL*VNLPFVVYTVASYHRSNGHSACASAIFALWHPACTGMCSHAGHGSYHS 330 P+S +A L N P+ YH+++G ++ A L HP+ T H H +H+ Sbjct: 271 PSSAASAFL-GNYPW-------YHQASGSASHLQATAPLLHPSQTPQAHHHHHHHHHA 320 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,351,882 Number of Sequences: 219361 Number of extensions: 1254671 Number of successful extensions: 2786 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2732 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2785 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
