ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl07e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476056.1| Oryza sativa (japonica cultivar-group), predic... 50 0.006
2gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.006
3gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome... 50 0.006
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
5emb|AL355595.10| Human DNA sequence from clone RP11-276G3 on chr... 44 0.34
6gb|AF527417.1| Homo sapiens cell division cycle 25A (CDC25A) gen... 40 5.3
7emb|X57495.1|DMCDC25 D.melanogaster mRNA CDC25 involved in cell ... 40 5.3
8gb|BC039099.1| Homo sapiens cDNA clone IMAGE:4824737 40 5.3
9gb|AC011773.9| Homo sapiens chromosome 8, clone RP11-219B4, comp... 40 5.3
10ref|NM_079823.2| Drosophila melanogaster string CG1395-RA (stg),... 40 5.3
11gb|AY069704.1| Drosophila melanogaster LD47579 full length cDNA 40 5.3
12gb|AC149363.2| Phakopsora pachyrhizi clone JGIAFNA-53G11, comple... 40 5.3
13gb|AC007855.5|AC007855 Drosophila melanogaster, chromosome 3R, r... 40 5.3
14gb|AC124916.3| Homo sapiens chromosome 3 clone RP11-1029M24, com... 40 5.3
15gb|AC104190.3| Homo sapiens chromosome 3 clone RP11-502L5, compl... 40 5.3
16gb|AE003768.2| Drosophila melanogaster chromosome 3R, section 10... 40 5.3
17gb|M24909.1|DROSTGA D.melanogaster string locus (stg) mRNA, enco... 40 5.3 
>ref|XM_476056.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3354

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 369 tcctctccggctggtcgccggaggc 393
           |||||||||||||||||||||||||
Sbjct: 539 tcctctccggctggtcgccggaggc 563
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>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10,
             complete sequence
          Length = 156772

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 369   tcctctccggctggtcgccggaggc 393
             |||||||||||||||||||||||||
Sbjct: 41139 tcctctccggctggtcgccggaggc 41163



 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 101   ctttttgcagcttaggctcctac 123
             |||||||||||||||||||||||
Sbjct: 40804 ctttttgcagcttaggctcctac 40826
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>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04,
              complete sequence
          Length = 136713

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 369    tcctctccggctggtcgccggaggc 393
              |||||||||||||||||||||||||
Sbjct: 129354 tcctctccggctggtcgccggaggc 129378



 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 101    ctttttgcagcttaggctcctac 123
              |||||||||||||||||||||||
Sbjct: 129019 ctttttgcagcttaggctcctac 129041
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                        
Query: 369     tcctctccggctggtcgccggaggc 393
               |||||||||||||||||||||||||
Sbjct: 4154660 tcctctccggctggtcgccggaggc 4154684



 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 101     ctttttgcagcttaggctcctac 123
               |||||||||||||||||||||||
Sbjct: 4154325 ctttttgcagcttaggctcctac 4154347
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>emb|AL355595.10| Human DNA sequence from clone RP11-276G3 on chromosome 13 Contains a
             novel gene and a novel pseudogene, complete sequence
          Length = 119343

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 256   tctgctatctttgctctttggc 277
             ||||||||||||||||||||||
Sbjct: 38954 tctgctatctttgctctttggc 38975
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>gb|AF527417.1| Homo sapiens cell division cycle 25A (CDC25A) gene, complete cds
          Length = 31868

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   ttatacacatcttcccaact 163
             ||||||||||||||||||||
Sbjct: 29473 ttatacacatcttcccaact 29454
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>emb|X57495.1|DMCDC25 D.melanogaster mRNA CDC25 involved in cell cycle control
          Length = 2615

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 5   tttggctagtattgcatttt 24
           ||||||||||||||||||||
Sbjct: 227 tttggctagtattgcatttt 208
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>gb|BC039099.1| Homo sapiens cDNA clone IMAGE:4824737
          Length = 1264

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 255 ttctgctatctttgctcttt 274
           ||||||||||||||||||||
Sbjct: 257 ttctgctatctttgctcttt 276
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>gb|AC011773.9| Homo sapiens chromosome 8, clone RP11-219B4, complete sequence
          Length = 160283

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   ttctgctatctttgctcttt 274
             ||||||||||||||||||||
Sbjct: 79245 ttctgctatctttgctcttt 79226
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>ref|NM_079823.2| Drosophila melanogaster string CG1395-RA (stg), mRNA
          Length = 3052

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 5   tttggctagtattgcatttt 24
           ||||||||||||||||||||
Sbjct: 681 tttggctagtattgcatttt 662
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>gb|AY069704.1| Drosophila melanogaster LD47579 full length cDNA
          Length = 2745

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 5   tttggctagtattgcatttt 24
           ||||||||||||||||||||
Sbjct: 681 tttggctagtattgcatttt 662
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>gb|AC149363.2| Phakopsora pachyrhizi clone JGIAFNA-53G11, complete sequence
          Length = 34849

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    ttgataactcctttttgccc 99
             ||||||||||||||||||||
Sbjct: 24965 ttgataactcctttttgccc 24984
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>gb|AC007855.5|AC007855 Drosophila melanogaster, chromosome 3R, region 98F-99A, BAC clone
              BACR22E21, complete sequence
          Length = 183576

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      tttggctagtattgcatttt 24
              ||||||||||||||||||||
Sbjct: 150718 tttggctagtattgcatttt 150737
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>gb|AC124916.3| Homo sapiens chromosome 3 clone RP11-1029M24, complete sequence
          Length = 207596

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    ttatacacatcttcccaact 163
              ||||||||||||||||||||
Sbjct: 184346 ttatacacatcttcccaact 184365
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>gb|AC104190.3| Homo sapiens chromosome 3 clone RP11-502L5, complete sequence
          Length = 171181

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   ttatacacatcttcccaact 163
             ||||||||||||||||||||
Sbjct: 48599 ttatacacatcttcccaact 48618
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>gb|AE003768.2| Drosophila melanogaster chromosome 3R, section 106 of 118 of the complete
              sequence
          Length = 243118

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      tttggctagtattgcatttt 24
              ||||||||||||||||||||
Sbjct: 222390 tttggctagtattgcatttt 222409
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>gb|M24909.1|DROSTGA D.melanogaster string locus (stg) mRNA, encoding a mitotic
           regulator
          Length = 2280

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 5   tttggctagtattgcatttt 24
           ||||||||||||||||||||
Sbjct: 225 tttggctagtattgcatttt 206


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,819,675
Number of Sequences: 3902068
Number of extensions: 2819675
Number of successful extensions: 48150
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48099
Number of HSP's gapped (non-prelim): 51
length of query: 397
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 375
effective length of database: 17,147,199,772
effective search space: 6430199914500
effective search space used: 6430199914500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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