>TF3C4_MOUSE (Q8BMQ2) General transcription factor 3C polypeptide 4 (EC|
           2.3.1.48) (Transcription factor IIIC-delta subunit)
           (TF3C-delta) (TFIIIC 90 kDa subunit) (TFIIIC 90)
          Length = 817

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 27/126 (21%)
 Frame = +1

Query: 169 DAITWSSDNLVAVASGHIVTILNPAA-LDGP-RGLVVLRPRDPFPIG-----------VV 309
           + ++WS D+ V+V++   V +L     +  P + LV+ R   P P+            V 
Sbjct: 64  EPLSWSEDHRVSVSTARSVAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKVGSKTEVA 123

Query: 310 NREDLFEPSLVPT-----SLARDTEPCARSV---------SWSQQGFAPNSGCLLAVCTV 447
             ++ F  S  PT      L R   P  +++         SWS  G   N  CLLA  T+
Sbjct: 124 ECKEKFASSKDPTISQTFMLDRMFNPEGKALPPMRGFKYTSWSPMGCDANGRCLLAALTM 183

Query: 448 DGHVNL 465
           D  + +
Sbjct: 184 DNRLTV 189

>TTC16_MOUSE (Q8C1F5) Tetratricopeptide repeat protein 16 (TPR repeat protein|
           16)
          Length = 767

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
 Frame = -2

Query: 452 PSTVQTANKQPEFGANPCWDHETDRAHGSVSRAKDV---GTKLGSKRSSLLTTPMGKGSL 282
           PS   +  + PE G  P     T      + RAK V   G KL ++RSS   T     SL
Sbjct: 640 PSQSTSTTEAPE-GPRPSKSRSTLSVKERIRRAKAVRAQGWKLKAQRSSQKVTKTP--SL 696

Query: 281 GRSTTSPRGPSSAAGFRIVTMWPEATATKLSLDQVMAS 168
             STT      SA      T WP   A  LS  ++ ++
Sbjct: 697 THSTTHSDIGESANDTPGQTPWPSKAADSLSFSEISST 734

>TF3C4_HUMAN (Q9UKN8) General transcription factor 3C polypeptide 4 (EC|
           2.3.1.48) (Transcription factor IIIC-delta subunit)
           (TF3C-delta) (TFIIIC 90 kDa subunit) (TFIIIC 90)
          Length = 822

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 27/126 (21%)
 Frame = +1

Query: 169 DAITWSSDNLVAVASGHIVTILNPAA-LDGP-RGLVVLRPRDPFPIG-----------VV 309
           + + WS D+ V+V++   + +L     +  P + LV+ R   P P+            V 
Sbjct: 68  EPLAWSEDHRVSVSTARSIAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKVGSKTEVA 127

Query: 310 NREDLFEPSLVPT-----SLARDTEPCARSV---------SWSQQGFAPNSGCLLAVCTV 447
             ++ F  S  PT      L R   P  +++         SWS  G   N  CLLA  T+
Sbjct: 128 ECKEKFAASKDPTVSQTFMLDRVFNPEGKALPPMRGFKYTSWSPMGCDANGRCLLAALTM 187

Query: 448 DGHVNL 465
           D  + +
Sbjct: 188 DNRLTI 193

>CSPG2_HUMAN (P13611) Versican core protein precursor (Large fibroblast|
            proteoglycan) (Chondroitin sulfate proteoglycan core
            protein 2) (PG-M) (Glial hyaluronate-binding protein)
            (GHAP)
          Length = 3396

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 35/99 (35%), Positives = 43/99 (43%), Gaps = 17/99 (17%)
 Frame = +1

Query: 124  PHYQAATLIAS---------PSYPDAITWSSDNLVAVASGHIVTILNPAALDG-PRGLVV 273
            P+Y   TL  S         PS P  I   S+     ASGH   I  P+AL G   G  V
Sbjct: 2805 PYYTDTTLAVSTFAKLSSQTPSSPLTIYSGSE-----ASGH-TEIPQPSALPGIDVGSSV 2858

Query: 274  LRPRDPFPIGVVNREDLFEPS-------LVPTSLARDTE 369
            + P+D F    VN E  F+PS         P SL+ DT+
Sbjct: 2859 MSPQDSFKEIHVNIEATFKPSSEEYLHITEPPSLSPDTK 2897

>DNBI_HCMVA (P17147) Major DNA-binding protein (MDBP)|
          Length = 1235

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 210 GNGHQVVA*PSDGVWIGRGGNQGGGL-VMRSHGQRNLRASNPKARR 76
           G G  V   PSDG+  GRGG  GG    M   G R L AS  +  R
Sbjct: 554 GGGRDVSGGPSDGLGGGRGGGGGGDSGGMMGRGGRMLGASVDRTYR 599

>DHE3_BACTN (P94598) Glutamate dehydrogenase (EC 1.4.1.3) (GDH)|
           (NAD(P)H-utilizing glutamate dehydrogenase)
          Length = 444

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = -2

Query: 323 RSSLLTTPMGKGSLGRSTTSPRGPSSAAGFRIV 225
           ++SL T PMG G  G S  SPRG S+A   R V
Sbjct: 112 KNSLTTLPMGGGK-GGSDFSPRGKSNAEVMRFV 143

>CREM_HUMAN (Q03060) cAMP-responsive element modulator|
          Length = 332

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
 Frame = +1

Query: 148 IASPSYPDAI-TWSSDNLVAVASGHIVTILNPAALDGPRGLVVLRPRDPFPIGVVNREDL 324
           IA+ + P +I   S+   +A+A G  + I NP + DG +GL  L   +            
Sbjct: 152 IATMAVPTSIYQTSTGQYIAIAQGGTIQISNPGS-DGVQGLQALTMTN------------ 198

Query: 325 FEPSLVPTSLARDTEPCARSVSWSQQGFAPNSGCLLAVCTVDGHVNLYRSP 477
              S  P   A   +  A+S   +QQ F P S  ++   T D      R+P
Sbjct: 199 ---SGAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQAATGDMPTYQIRAP 246

>Y150_MYCPN (P75036) Very hypothetical mgpC-like protein MPN150 (E07_orf224)|
          Length = 224

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 115 AMAPHYQAATLIASPSYPDAITWSSDNLVAVASGHIVTILNPAALDGP-RGLVVL 276
           A A  Y   T   + +Y  A+TWS+   +  A G+   + N A L+GP  GL  L
Sbjct: 88  AGAVGYDMTTDTNASTYNQALTWSTTAGLDSAGGYKALVENTAGLNGPINGLFTL 142

>PDE4C_DROME (Q9W4S9) cAMP-specific 3',5'-cyclic phosphodiesterase, isoforms N/G|
           (EC 3.1.4.17) (Learning/memory process protein) (Protein
           dunce)
          Length = 983

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
 Frame = -2

Query: 446 TVQTANKQPEFGANPC--------WDHETDRAHGSVSRAKDVGTKLGSKRSSLLTTPMGK 291
           T+ T  +  EF  +P         +D ET+  + ++  A   G+   SKRSSL +    +
Sbjct: 169 TMATEAEGEEFDVDPMDEDDEDQTYDRETEEFYSNIQDAAGTGSSSRSKRSSLFS----R 224

Query: 290 GSLGRSTTSPRGPSSAAG 237
                +TTS  G  +  G
Sbjct: 225 SDSSATTTSSSGGGTFTG 242

>SYQ_DROME (Q9Y105) Probable glutaminyl-tRNA synthetase (EC 6.1.1.18)|
           (Glutamine--tRNA ligase) (GlnRS)
          Length = 778

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 269 LCFALGILFPLEWSTGKISLN 331
           LC ALGI  P++W  G++++N
Sbjct: 473 LCNALGIYCPVQWEYGRLNMN 493

>DCD_COREF (Q8FM44) Deoxycytidine triphosphate deaminase (EC 3.5.4.13) (dCTP|
           deaminase)
          Length = 193

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 320 SSLLTTPMGKGSLGRSTTSPRGPSSAAGF 234
           SS   TP G GSLG      RGP+ + G+
Sbjct: 155 SSPAETPYGSGSLGSKYQGQRGPTPSKGY 183


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,630,042
Number of Sequences: 219361
Number of extensions: 1487346
Number of successful extensions: 4635
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4632
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)