ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl07e01 |
|---|---|
| Clone Library Name | barley_pub |
>OXRP_RAT (Q63617) 150 kDa oxygen-regulated protein precursor (Orp150)| (Hypoxia up-regulated 1) Length = 999 Score = 49.7 bits (117), Expect = 3e-06 Identities = 27/72 (37%), Positives = 40/72 (55%) Frame = +3 Query: 180 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKPPALAALADGNRLAGEEAAGITARHPA 359 +DLGSE +KVA V PG P+ + +N+ S+RK P L + R G+ AAG+ ++P Sbjct: 38 VDLGSESMKVAIVK--PG-VPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKNPK 94 Query: 360 KVFSRMRDLLAK 395 + LL K Sbjct: 95 ATLRYFQHLLGK 106
>OXRP_CRIGR (Q60432) 150 kDa oxygen-regulated protein precursor (Orp150)| (Hypoxia up-regulated 1) (170 kDa glucose-regulated protein) Length = 999 Score = 49.7 bits (117), Expect = 3e-06 Identities = 27/72 (37%), Positives = 40/72 (55%) Frame = +3 Query: 180 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKPPALAALADGNRLAGEEAAGITARHPA 359 +DLGSE +KVA V PG P+ + +N+ S+RK P L + R G+ AAG+ ++P Sbjct: 38 VDLGSESMKVAIVK--PG-VPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKNPK 94 Query: 360 KVFSRMRDLLAK 395 + LL K Sbjct: 95 ATLRYFQHLLGK 106
>OXRP_HUMAN (Q9Y4L1) 150 kDa oxygen-regulated protein precursor (Orp150)| (Hypoxia up-regulated 1) Length = 999 Score = 48.1 bits (113), Expect = 1e-05 Identities = 26/72 (36%), Positives = 40/72 (55%) Frame = +3 Query: 180 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKPPALAALADGNRLAGEEAAGITARHPA 359 +DLGSE +KVA V PG P+ + +N+ S+RK P + L + R G+ AA + ++P Sbjct: 38 VDLGSESMKVAIV--KPG-VPMEIVLNKESRRKTPVIVTLKENERFFGDSAASMAIKNPK 94 Query: 360 KVFSRMRDLLAK 395 + LL K Sbjct: 95 ATLRYFQHLLGK 106
>GRP78_PLAFO (Q05866) 78 kDa glucose-regulated protein homolog precursor (GRP| 78) Length = 655 Score = 40.4 bits (93), Expect = 0.002 Identities = 26/91 (28%), Positives = 41/91 (45%) Frame = +3 Query: 180 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKPPALAALADGNRLAGEEAAGITARHPA 359 IDLG+ + V GR + + NE+ R P+ + DG R GE A HP Sbjct: 33 IDLGTTYSCVGV--FKNGR--VEILNNELGNRITPSYVSFVDGERKVGEAAKLEATVHPT 88 Query: 360 KVFSRMRDLLAKPFPYARALADSLFLPYDLV 452 + ++ L+ + F + D LPY++V Sbjct: 89 QTVFDVKRLIGRKFDDQEVVKDRSLLPYEIV 119
>CHEB2_PSEF5 (Q4KG36) Chemotaxis response regulator protein-glutamate| methylesterase 2 (EC 3.1.1.61) Length = 373 Score = 32.7 bits (73), Expect = 0.44 Identities = 15/27 (55%), Positives = 17/27 (62%) Frame = +1 Query: 10 APAPSTLASSRSPNPDPPACHPTSPLA 90 APAPS+ ASSRSP P P +P A Sbjct: 151 APAPSSFASSRSPAPAPAPARAAAPAA 177
>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)| Length = 3164 Score = 30.8 bits (68), Expect = 1.7 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +1 Query: 1 LSRAPAPSTLASSRSPNPDPPACHPTSP 84 L R PA T +S P+P PPA P +P Sbjct: 2830 LGRNPAEPTSSSPAGPSPPPPAVQPVAP 2857
>XYLS_SULSO (Q9P999) Alpha-xylosidase (EC 3.2.1.-)| Length = 731 Score = 30.8 bits (68), Expect = 1.7 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = -1 Query: 122 EQETRRHAGERASGLVGWHAGGSGFGDLELASVDGAG 12 EQE GER GL G HAGG+G G +D +G Sbjct: 103 EQEFELSEGERVYGL-GQHAGGNGLGQSSAYKLDYSG 138
>IGHA1_GORGO (P20758) Ig alpha-1 chain C region| Length = 353 Score = 30.0 bits (66), Expect = 2.8 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = +1 Query: 7 RAPA-PSTLASSRSPNPDPPACHPTSPLAR 93 R P+ P T + S P P PP CHP L R Sbjct: 102 RVPSTPPTPSPSTPPTPSPPCCHPRLSLHR 131
>HSP7F_SCHPO (O59838) Heat shock protein homolog pss1| Length = 720 Score = 30.0 bits (66), Expect = 2.8 Identities = 21/74 (28%), Positives = 35/74 (47%) Frame = +3 Query: 180 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKPPALAALADGNRLAGEEAAGITARHPA 359 ID G+ +A +A RA I V +NE+S R P+L + + +R GE A A + Sbjct: 10 IDFGNSKTVIA---VARNRA-IDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEASNFR 65 Query: 360 KVFSRMRDLLAKPF 401 ++ L + + Sbjct: 66 NTVGSLKRLAGRTY 79
>SSGP_VOLCA (P21997) Sulfated surface glycoprotein 185 precursor (SSG 185)| Length = 485 Score = 30.0 bits (66), Expect = 2.8 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +1 Query: 13 PAPSTLASSRSPNPDPPACHPTSPLARSP 99 P+P ASSR P+P PP+ P SP SP Sbjct: 231 PSPQPTASSRPPSP-PPSPRPPSPPPPSP 258
>HXC4_HUMAN (P09017) Homeobox protein Hox-C4 (Hox-3E) (CP19)| Length = 264 Score = 29.6 bits (65), Expect = 3.7 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 6/35 (17%) Frame = +1 Query: 13 PAPSTLASSRSPNPDPPAC------HPTSPLARSP 99 PAP + AS+ SP+P PPAC HP+S ++ P Sbjct: 100 PAPLSGASA-SPSPAPPACSQPAPDHPSSAASKQP 133
>PYRE_SYNEL (Q8DHW5) Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRT)| (OPRTase) Length = 189 Score = 29.6 bits (65), Expect = 3.7 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = +3 Query: 237 APIAVAINEMSKRKPPALAALADGNRLAGEEAAGITARHPAKVFSRMRDLLAKPFP 404 AP AVA+ ++ P + A++ + LAG++ A + R AK M + P P Sbjct: 62 APEAVAVAGLTLGADPLVVAVSVLSNLAGQDRAALIVRKEAKGHGTMSFIEGPPLP 117
>DNAK_GLUOX (Q5FSL5) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 634 Score = 29.6 bits (65), Expect = 3.7 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Frame = +3 Query: 258 NEMSKRKPPALAALAD-GNRLAGEEAAGITARHPAKVFSRMRDLLAKPFPYARALADSLF 434 N R P++ A D G RL G+ A +PA ++ L+ + + D Sbjct: 29 NSEGARTTPSMVAFTDNGERLVGQAAKRQAVTNPANTLYAVKRLIGRRYDDPTVQKDKEM 88 Query: 435 LPYDLV 452 +PY +V Sbjct: 89 VPYAIV 94
>HXC4_MOUSE (Q08624) Homeobox protein Hox-C4 (Hox-3.5)| Length = 264 Score = 29.3 bits (64), Expect = 4.8 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 6/35 (17%) Frame = +1 Query: 13 PAPSTLASSRSPNPDPPAC------HPTSPLARSP 99 PAP + +S SP+P PPAC HP+S ++ P Sbjct: 100 PAPLS-GTSASPSPAPPACSQPAPDHPSSAASKQP 133
>HNRPU_HUMAN (Q00839) Heterogenous nuclear ribonucleoprotein U (hnRNP U)| (Scaffold attachment factor A) (SAF-A) (p120) (pp120) Length = 824 Score = 29.3 bits (64), Expect = 4.8 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = -1 Query: 371 GEDLGRVACGDAGRLLAGEAVAVGQRGERGGLALGHLVDGDGDRGAARREVHG 213 GE+ G D+G + EA + + G+ G G GD + GA HG Sbjct: 107 GEENGAAGAADSGPMEEEEAASEDENGDDQGFQEGEDELGDEEEGAGDENGHG 159
>SPT5H_MOUSE (O55201) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) Length = 1082 Score = 29.3 bits (64), Expect = 4.8 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 13 PAPSTLASSRSPNPDPPACHPTSPLARSP 99 P PS +A SP+P P P +P A SP Sbjct: 926 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 954
>SPT5H_HUMAN (O00267) Transcription elongation factor SPT5 (hSPT5) (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) (DSIF p160) (Tat-cotransactivator 1 protein) (Tat-CT1 protein) Length = 1087 Score = 29.3 bits (64), Expect = 4.8 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 13 PAPSTLASSRSPNPDPPACHPTSPLARSP 99 P PS +A SP+P P P +P A SP Sbjct: 932 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 960
>SPT5H_PONPY (Q5R405) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) Length = 1083 Score = 29.3 bits (64), Expect = 4.8 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 13 PAPSTLASSRSPNPDPPACHPTSPLARSP 99 P PS +A SP+P P P +P A SP Sbjct: 928 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 956
>SPT5H_CHICK (Q5ZI08) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) Length = 1079 Score = 29.3 bits (64), Expect = 4.8 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 13 PAPSTLASSRSPNPDPPACHPTSPLARSP 99 P PS +A SP+P P P +P A SP Sbjct: 924 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 952
>SPT5H_BRARE (Q9DDT5) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) (Protein foggy) Length = 1084 Score = 29.3 bits (64), Expect = 4.8 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 13 PAPSTLASSRSPNPDPPACHPTSPLARSP 99 P PS +A SP+P P P +P A SP Sbjct: 930 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 958
>POLR_EPMV (P20126) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1839 Score = 29.3 bits (64), Expect = 4.8 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%) Frame = +1 Query: 25 TLASSRSP----NPDPPACHPTSPLARSP 99 TL +++P NP PP+ HP +PLA P Sbjct: 705 TLVPAKTPSIYANPTPPSSHPFTPLADDP 733
>NAGB_STAAW (P65513) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 252 Score = 28.9 bits (63), Expect = 6.3 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 324 EEAAGITARHPAKVFSRMRDLLAKPFPY 407 +E G+TA HP M D+L K +PY Sbjct: 67 DEYVGLTASHPQSYHYYMDDMLFKQYPY 94
>NAGB_STAAS (Q6GBR8) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 252 Score = 28.9 bits (63), Expect = 6.3 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 324 EEAAGITARHPAKVFSRMRDLLAKPFPY 407 +E G+TA HP M D+L K +PY Sbjct: 67 DEYVGLTASHPQSYHYYMDDMLFKQYPY 94
>NAGB_STAAR (Q6GJA0) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 252 Score = 28.9 bits (63), Expect = 6.3 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 324 EEAAGITARHPAKVFSRMRDLLAKPFPY 407 +E G+TA HP M D+L K +PY Sbjct: 67 DEYVGLTASHPQSYHYYMDDMLFKQYPY 94
>NAGB_STAAN (P99125) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 252 Score = 28.9 bits (63), Expect = 6.3 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 324 EEAAGITARHPAKVFSRMRDLLAKPFPY 407 +E G+TA HP M D+L K +PY Sbjct: 67 DEYVGLTASHPQSYHYYMDDMLFKQYPY 94
>NAGB_STAAM (P65512) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 252 Score = 28.9 bits (63), Expect = 6.3 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 324 EEAAGITARHPAKVFSRMRDLLAKPFPY 407 +E G+TA HP M D+L K +PY Sbjct: 67 DEYVGLTASHPQSYHYYMDDMLFKQYPY 94
>NAGB_STAAC (Q5HIA6) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 252 Score = 28.9 bits (63), Expect = 6.3 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 324 EEAAGITARHPAKVFSRMRDLLAKPFPY 407 +E G+TA HP M D+L K +PY Sbjct: 67 DEYVGLTASHPQSYHYYMDDMLFKQYPY 94
>HCN2_HUMAN (Q9UL51) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 (Brain cyclic nucleotide gated channel 2) (BCNG-2) Length = 889 Score = 28.9 bits (63), Expect = 6.3 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +1 Query: 1 LSRAPAPSTLASSRSPNPDPPACHPTSPLA-RSP 99 L R P P ++ SP P PPA P +P + R+P Sbjct: 757 LVRRPPPGPAPAAASPGPPPPASPPGAPASPRAP 790
>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor| (Hydroxyproline-rich glycoprotein 1) Length = 555 Score = 28.9 bits (63), Expect = 6.3 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +1 Query: 10 APAPSTLASSRSPNPDPPACHPTSPLARSP 99 +PAP + S P+P PP+ P SP SP Sbjct: 72 SPAPPSPPSPAPPSPAPPSPAPPSPAPPSP 101 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +1 Query: 10 APAPSTLASSRSPNPDPPACHPTSPLARSP 99 +PAP + S P+P PPA P SP+ SP Sbjct: 222 SPAPPSPPSPAPPSPSPPA--PPSPVPPSP 249
>PCGF2_HUMAN (P35227) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) Length = 344 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 13/39 (33%) Frame = +1 Query: 7 RAPAPSTL--ASSRSPNP-----------DPPACHPTSP 84 +AP+P+TL SS P+P PPA HPTSP Sbjct: 262 KAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSP 300
>TOP2_TRYBB (P12531) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1221 Score = 28.9 bits (63), Expect = 6.3 Identities = 18/42 (42%), Positives = 19/42 (45%) Frame = -1 Query: 344 GDAGRLLAGEAVAVGQRGERGGLALGHLVDGDGDRGAARREV 219 GD G AG A AVG RGE+ G G G RR V Sbjct: 1172 GDGGATAAGAAAAVGGRGEK---------KGPGRAGGVRRMV 1204
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 28.9 bits (63), Expect = 6.3 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = -1 Query: 371 GEDLGRVACGDAGRLLAGEAVAVGQRGERGGLALGHLVDGDGDRGAARREVHG 213 G G+ + G+ R +G + + GQ G +LGH G G R + HG Sbjct: 261 GSRSGQSSRGERHRSSSGSSSSYGQHGSGSRQSLGHGRQGSGSRQSPSHVRHG 313
>PCGF2_MOUSE (P23798) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) (Zfp-144) Length = 342 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 13/39 (33%) Frame = +1 Query: 7 RAPAPSTL--ASSRSPNP-----------DPPACHPTSP 84 +AP+P+TL SS P+P PPA HPTSP Sbjct: 262 KAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSP 300
>STP2_RAT (P11101) Nuclear transition protein 2 (TP-2) (TP2)| Length = 114 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = +1 Query: 4 SRAPAPSTLASSRSPNPDPPACHPTSPL 87 S+A PS SS SP+P PP HP +P+ Sbjct: 39 SQAGHPS---SSSSPSPGPPTKHPKTPM 63
>3MGH_CORGL (Q8NU33) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 189 Score = 28.5 bits (62), Expect = 8.2 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 10/53 (18%) Frame = -1 Query: 359 GRVACGD----------AGRLLAGEAVAVGQRGERGGLALGHLVDGDGDRGAA 231 G + CG AG +++GE++A +RGE G+ L G G+ G A Sbjct: 76 GNIVCGPEGTGQGVLLRAGEVVSGESIAQSRRGE--GIPHARLAQGPGNFGQA 126
>DNAK_METSS (Q9ZFC6) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 641 Score = 28.5 bits (62), Expect = 8.2 Identities = 23/90 (25%), Positives = 36/90 (40%) Frame = +3 Query: 180 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKPPALAALADGNRLAGEEAAGITARHPA 359 IDLG+ VA + G P + E ++ P +A DG LAG A +P Sbjct: 7 IDLGTTNSCVAVME---GGKPRVIENAEGTRTTPSIVAYQDDGEILAGAPAKRQAVTNPK 63 Query: 360 KVFSRMRDLLAKPFPYARALADSLFLPYDL 449 ++ L+ + F D +PY + Sbjct: 64 NTLYAVKRLIGRRFEEKEVQKDIGLMPYTI 93 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.305 0.122 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,715,204 Number of Sequences: 219361 Number of extensions: 644688 Number of successful extensions: 3306 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 2645 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3277 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (22.0 bits)
