ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl07d09 |
|---|---|
| Clone Library Name | barley_pub |
>CV019_HUMAN (Q13769) Protein C22orf19 (NF2/meningioma region protein pK1.3)| (Placental protein 39.2) Length = 683 Score = 37.7 bits (86), Expect = 0.013 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Frame = +1 Query: 163 HDLLAETRASVEEVAARILAIKKDGAPKS--ELRELVAQMSLLLITLRQVNREILMEEDK 336 ++L T ++ + A I +K G E+ E Q + +TL+++NR + K Sbjct: 52 YELYKYTCQELQRLMAEIQDLKSRGGKDVAIEIEERRIQSCVHFMTLKKLNRLAHIRLKK 111 Query: 337 VKGETEAAKAPVDSTTLRLHNLLYE 411 + +T AK VD+ L+L NLLYE Sbjct: 112 GRDQTHEAKQKVDAYHLQLQNLLYE 136
>IF2_STRMU (Q8DVP9) Translation initiation factor IF-2| Length = 916 Score = 34.3 bits (77), Expect = 0.15 Identities = 19/79 (24%), Positives = 40/79 (50%) Frame = +1 Query: 175 AETRASVEEVAARILAIKKDGAPKSELRELVAQMSLLLITLRQVNREILMEEDKVKGETE 354 A+ + SVE +AA +L I +G + + V ++ ITL + + +++ + Sbjct: 724 ADVQGSVEALAASLLKIDVEGVKVNVVHSAVGAINESDITLAEASNAVIIGFNVRPTPQA 783 Query: 355 AAKAPVDSTTLRLHNLLYE 411 +A D +RLH+++Y+ Sbjct: 784 RQQAEADEVEIRLHSIIYK 802
>IF2_STRPM (Q48RU8) Translation initiation factor IF-2| Length = 953 Score = 33.1 bits (74), Expect = 0.33 Identities = 17/79 (21%), Positives = 41/79 (51%) Frame = +1 Query: 175 AETRASVEEVAARILAIKKDGAPKSELRELVAQMSLLLITLRQVNREILMEEDKVKGETE 354 A+ + SVE +AA ++ I+ +G + + V ++ +TL + + +++ + Sbjct: 760 ADVQGSVEALAASLVKIEVEGVRVNVVHSAVGAINESDVTLAEASNAVIIGFNVRPTPQA 819 Query: 355 AAKAPVDSTTLRLHNLLYE 411 +A D +RLH+++Y+ Sbjct: 820 RQQADTDDVEIRLHSIIYK 838
>IF2_STRP6 (Q5XAH1) Translation initiation factor IF-2| Length = 953 Score = 33.1 bits (74), Expect = 0.33 Identities = 17/79 (21%), Positives = 41/79 (51%) Frame = +1 Query: 175 AETRASVEEVAARILAIKKDGAPKSELRELVAQMSLLLITLRQVNREILMEEDKVKGETE 354 A+ + SVE +AA ++ I+ +G + + V ++ +TL + + +++ + Sbjct: 760 ADVQGSVEALAASLVKIEVEGVRVNVVHSAVGAINESDVTLAEASNAVIIGFNVRPTPQA 819 Query: 355 AAKAPVDSTTLRLHNLLYE 411 +A D +RLH+++Y+ Sbjct: 820 RQQADTDDVEIRLHSIIYK 838
>IF2_STRP3 (Q8K644) Translation initiation factor IF-2| Length = 953 Score = 33.1 bits (74), Expect = 0.33 Identities = 17/79 (21%), Positives = 41/79 (51%) Frame = +1 Query: 175 AETRASVEEVAARILAIKKDGAPKSELRELVAQMSLLLITLRQVNREILMEEDKVKGETE 354 A+ + SVE +AA ++ I+ +G + + V ++ +TL + + +++ + Sbjct: 760 ADVQGSVEALAASLVKIEVEGVRVNVVHSAVGAINESDVTLAEASNAVIIGFNVRPTPQA 819 Query: 355 AAKAPVDSTTLRLHNLLYE 411 +A D +RLH+++Y+ Sbjct: 820 RQQADTDDVEIRLHSIIYK 838
>IF2_STRP1 (Q99YG1) Translation initiation factor IF-2| Length = 953 Score = 33.1 bits (74), Expect = 0.33 Identities = 17/79 (21%), Positives = 41/79 (51%) Frame = +1 Query: 175 AETRASVEEVAARILAIKKDGAPKSELRELVAQMSLLLITLRQVNREILMEEDKVKGETE 354 A+ + SVE +AA ++ I+ +G + + V ++ +TL + + +++ + Sbjct: 760 ADVQGSVEALAASLVKIEVEGVRVNVVHSAVGAINESDVTLAEASNAVIIGFNVRPTPQA 819 Query: 355 AAKAPVDSTTLRLHNLLYE 411 +A D +RLH+++Y+ Sbjct: 820 RQQADTDDVEIRLHSIIYK 838
>IF2_STRT2 (Q5M5V5) Translation initiation factor IF-2| Length = 943 Score = 32.7 bits (73), Expect = 0.43 Identities = 19/79 (24%), Positives = 40/79 (50%) Frame = +1 Query: 175 AETRASVEEVAARILAIKKDGAPKSELRELVAQMSLLLITLRQVNREILMEEDKVKGETE 354 A+ + SVE +AA +L I +G + + V ++ ITL + + +++ + Sbjct: 751 ADVQGSVEALAASLLKIDVEGVRVNVVHSAVGAINESDITLAEASDAVVIGFNVRPTPQA 810 Query: 355 AAKAPVDSTTLRLHNLLYE 411 +A D +RLH+++Y+ Sbjct: 811 RQQAETDEVEIRLHSIIYK 829
>IF2_STRT1 (Q5M1B9) Translation initiation factor IF-2| Length = 943 Score = 32.7 bits (73), Expect = 0.43 Identities = 19/79 (24%), Positives = 40/79 (50%) Frame = +1 Query: 175 AETRASVEEVAARILAIKKDGAPKSELRELVAQMSLLLITLRQVNREILMEEDKVKGETE 354 A+ + SVE +AA +L I +G + + V ++ ITL + + +++ + Sbjct: 751 ADVQGSVEALAASLLKIDVEGVRVNVVHSAVGAINESDITLAEASDAVVIGFNVRPTPQA 810 Query: 355 AAKAPVDSTTLRLHNLLYE 411 +A D +RLH+++Y+ Sbjct: 811 RQQAETDEVEIRLHSIIYK 829
>IF2_STRP8 (Q8NZU7) Translation initiation factor IF-2| Length = 953 Score = 32.3 bits (72), Expect = 0.56 Identities = 17/79 (21%), Positives = 40/79 (50%) Frame = +1 Query: 175 AETRASVEEVAARILAIKKDGAPKSELRELVAQMSLLLITLRQVNREILMEEDKVKGETE 354 A+ + SVE +AA ++ I +G + + V ++ +TL + + +++ + Sbjct: 760 ADVQGSVEALAASLVKIDVEGVRVNVVHSAVGAINESDVTLAEASNAVIIGFNVRPTPQA 819 Query: 355 AAKAPVDSTTLRLHNLLYE 411 +A D +RLH+++Y+ Sbjct: 820 RQQADTDDVEIRLHSIIYK 838
>IF2_STRAG (P0A3K7) Translation initiation factor IF-2| Length = 927 Score = 31.6 bits (70), Expect = 0.95 Identities = 17/79 (21%), Positives = 39/79 (49%) Frame = +1 Query: 175 AETRASVEEVAARILAIKKDGAPKSELRELVAQMSLLLITLRQVNREILMEEDKVKGETE 354 A+ + SVE +AA +L I +G + + V ++ +TL + + +++ + Sbjct: 734 ADVQGSVEALAASLLKIDVEGVKVNVVHSAVGAINESDVTLAEASNAVIIGFNVRPTPQA 793 Query: 355 AAKAPVDSTTLRLHNLLYE 411 +A D +R H+++Y+ Sbjct: 794 RQQADADDVEIRQHSIIYK 812
>IF2_STRA5 (Q8E1H3) Translation initiation factor IF-2| Length = 927 Score = 31.6 bits (70), Expect = 0.95 Identities = 17/79 (21%), Positives = 39/79 (49%) Frame = +1 Query: 175 AETRASVEEVAARILAIKKDGAPKSELRELVAQMSLLLITLRQVNREILMEEDKVKGETE 354 A+ + SVE +AA +L I +G + + V ++ +TL + + +++ + Sbjct: 734 ADVQGSVEALAASLLKIDVEGVKVNVVHSAVGAINESDVTLAEASNAVIIGFNVRPTPQA 793 Query: 355 AAKAPVDSTTLRLHNLLYE 411 +A D +R H+++Y+ Sbjct: 794 RQQADADDVEIRQHSIIYK 812
>IF2_STRA3 (P0A3K6) Translation initiation factor IF-2| Length = 927 Score = 31.6 bits (70), Expect = 0.95 Identities = 17/79 (21%), Positives = 39/79 (49%) Frame = +1 Query: 175 AETRASVEEVAARILAIKKDGAPKSELRELVAQMSLLLITLRQVNREILMEEDKVKGETE 354 A+ + SVE +AA +L I +G + + V ++ +TL + + +++ + Sbjct: 734 ADVQGSVEALAASLLKIDVEGVKVNVVHSAVGAINESDVTLAEASNAVIIGFNVRPTPQA 793 Query: 355 AAKAPVDSTTLRLHNLLYE 411 +A D +R H+++Y+ Sbjct: 794 RQQADADDVEIRQHSIIYK 812
>IF2_STRA1 (Q3K302) Translation initiation factor IF-2| Length = 927 Score = 31.6 bits (70), Expect = 0.95 Identities = 17/79 (21%), Positives = 39/79 (49%) Frame = +1 Query: 175 AETRASVEEVAARILAIKKDGAPKSELRELVAQMSLLLITLRQVNREILMEEDKVKGETE 354 A+ + SVE +AA +L I +G + + V ++ +TL + + +++ + Sbjct: 734 ADVQGSVEALAASLLKIDVEGVKVNVVHSAVGAINESDVTLAEASNAVIIGFNVRPTPQA 793 Query: 355 AAKAPVDSTTLRLHNLLYE 411 +A D +R H+++Y+ Sbjct: 794 RQQADADDVEIRQHSIIYK 812
>IF2_RALSO (Q8XZV6) Translation initiation factor IF-2| Length = 964 Score = 31.2 bits (69), Expect = 1.2 Identities = 19/64 (29%), Positives = 30/64 (46%) Frame = +1 Query: 172 LAETRASVEEVAARILAIKKDGAPKSELRELVAQMSLLLITLRQVNREILMEEDKVKGET 351 LA +A E AAR A D AP+ + E A+++ ++ E DK+K E Sbjct: 178 LAAKKAEEEAAAARAAAEASDEAPRRKAEEDAARLASEREAAQKAAEEARAAADKIKAEE 237 Query: 352 EAAK 363 + A+ Sbjct: 238 DGAR 241
>IF2_LISIN (Q92C29) Translation initiation factor IF-2| Length = 782 Score = 29.3 bits (64), Expect = 4.7 Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Frame = +1 Query: 175 AETRASVEEVAARILAIKKDGAPKSELRELVAQMSLLLITLRQVNREILMEEDKVKGETE 354 A+ + SVE +AA + I +G + V ++ ITL + I++ + V+ T+ Sbjct: 589 ADVQGSVEALAASLRKIDVEGVNVKIIHTAVGAINESDITLAAASNAIIIGFN-VRPTTQ 647 Query: 355 AAKAPV-DSTTLRLHNLLYE 411 A +A +S +RLH ++Y+ Sbjct: 648 AREAAENESVDIRLHRVIYK 667
>RPOA_HELPY (P56001) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 344 Score = 28.9 bits (63), Expect = 6.2 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Frame = +1 Query: 229 KDGAPKSELRELVAQMSLLL--ITLRQVNREILMEEDKVKGETEAAKAPVDSTTLRLHNL 402 KD + K E L A+ L I ++ V +LM E+++KG K D +L++L Sbjct: 255 KDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMGKKSYDEIAEKLNDL 314 Query: 403 LYEKTTT*RPSGRAS 447 Y T P R S Sbjct: 315 GYPVGTELSPEQRES 329
>RPOA_HELPJ (Q9ZJT5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 344 Score = 28.9 bits (63), Expect = 6.2 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Frame = +1 Query: 229 KDGAPKSELRELVAQMSLLL--ITLRQVNREILMEEDKVKGETEAAKAPVDSTTLRLHNL 402 KD + K E L A+ L I ++ V +LM E+++KG K D +L++L Sbjct: 255 KDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMGKKSYDEIAEKLNDL 314 Query: 403 LYEKTTT*RPSGRAS 447 Y T P R S Sbjct: 315 GYPVGTELSPEQRES 329
>HSP82_ASHGO (Q8J2M3) Heat shock protein HSP82| Length = 704 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +1 Query: 259 ELVAQMSLLLITLRQVNREILMEEDKVKGETEAAKAP 369 E VA LL+T ++V +E+ +EE++ K ETE K P Sbjct: 200 EFVAYPIQLLVT-KEVEKEVPVEEEEKKEETEDDKKP 235 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,100,920 Number of Sequences: 219361 Number of extensions: 250098 Number of successful extensions: 1301 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1290 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1301 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
