ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl07d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SOX13_MOUSE (Q04891) SOX-13 protein 29 6.4
2AAAS_MOUSE (P58742) Aladin (Adracalin) 28 8.4
3AAAS_HUMAN (Q9NRG9) Aladin (Adracalin) 28 8.4

>SOX13_MOUSE (Q04891) SOX-13 protein|
          Length = 985

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 188 ATSAADAVTTCCPPGDQATEQKAGEPEP 105
           A ++ DA T   PP D A+ + +G PEP
Sbjct: 34  APASQDAATAKAPPQDCASPESSGSPEP 61



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>AAAS_MOUSE (P58742) Aladin (Adracalin)|
          Length = 546

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 112 GSPAFCSVAWSPGGQHVVTASAADVAILIHD 204
           G     S+AW+P G  +++AS  D  IL+ D
Sbjct: 243 GHTPVTSLAWAPNGGWLLSASPVDAVILVWD 273



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>AAAS_HUMAN (Q9NRG9) Aladin (Adracalin)|
          Length = 546

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 112 GSPAFCSVAWSPGGQHVVTASAADVAILIHD 204
           G     S+AW+P G  +++AS  D AI + D
Sbjct: 243 GHTPVTSLAWAPSGGRLLSASPVDAAIRVWD 273


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,136,630
Number of Sequences: 219361
Number of extensions: 647312
Number of successful extensions: 2394
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2394
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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