ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl07c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NOP14_HUMAN (P78316) Probable nucleolar complex protein 14 33 0.16
2NOP14_MOUSE (Q8R3N1) Probable nucleolar complex protein 14 32 0.27
3NOP14_SCHPO (O43051) Probable nucleolar complex protein 14 28 6.8
4APLP_MANSE (Q25490) Apolipophorins precursor [Contains: Apolipop... 27 8.8

>NOP14_HUMAN (P78316) Probable nucleolar complex protein 14|
          Length = 857

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +1

Query: 295 SNPFEAIWSRRKFDVLGKKRKGEERRTSRSRSDAVHKR 408
           SNPFE   +R+KF +LG+K + +      SR+ A+ KR
Sbjct: 29  SNPFEVKVNRQKFQILGRKTRHDVGLPGVSRARALRKR 66



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>NOP14_MOUSE (Q8R3N1) Probable nucleolar complex protein 14|
          Length = 860

 Score = 32.3 bits (72), Expect = 0.27
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 298 NPFEAIWSRRKFDVLGKKRKGEERRTSRSRSDAVHKR 408
           NPFE   +R+KF +LG+K + +      SR+ A+ KR
Sbjct: 30  NPFEVKVNRQKFQILGRKTRHDVGLPGVSRARAIRKR 66



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>NOP14_SCHPO (O43051) Probable nucleolar complex protein 14|
          Length = 827

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 298 NPFEAIWSRRKFDVLGKKRKGEERRTSRSR 387
           N F+  +++RKFDV G++ KG E +   SR
Sbjct: 52  NLFDRQFTKRKFDVGGRRVKGTEGKPGVSR 81



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>APLP_MANSE (Q25490) Apolipophorins precursor [Contains: Apolipophorin-2|
            (Apolipophorin II) (apoLp-2); Apolipophorin-1
            (Apolipophorin I) (apoLp-1)]
          Length = 3305

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -3

Query: 400  GQRRSGSGRCASPR-PCASCRARRTCGATRW 311
            G RRS S  C  PR P  +C AR   G   W
Sbjct: 2967 GYRRSRSRGCCPPRCPTPACAARTATGPGSW 2997


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,006,149
Number of Sequences: 219361
Number of extensions: 308881
Number of successful extensions: 1315
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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