ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl07c10 |
|---|---|
| Clone Library Name | barley_pub |
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 87.4 bits (215), Expect = 1e-17 Identities = 41/74 (55%), Positives = 56/74 (75%) Frame = +3 Query: 231 KDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTKVEA 410 K D++S +PF +EK AVLQEAR F++ ++ RRC ++TK+LYL+NQGE F +EA Sbjct: 7 KKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTMEA 66 Query: 411 TEVFFAVTKLFQSN 452 TE FFA+T+LFQSN Sbjct: 67 TEAFFAMTRLFQSN 80
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 87.0 bits (214), Expect = 2e-17 Identities = 41/74 (55%), Positives = 55/74 (74%) Frame = +3 Query: 231 KDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTKVEA 410 K D++S +PF +EK AVLQEAR F++ ++ RRC ++TK+LYL+NQGE F EA Sbjct: 7 KKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTTEA 66 Query: 411 TEVFFAVTKLFQSN 452 TE FFA+T+LFQSN Sbjct: 67 TEAFFAMTRLFQSN 80
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 86.3 bits (212), Expect = 3e-17 Identities = 41/74 (55%), Positives = 55/74 (74%) Frame = +3 Query: 231 KDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTKVEA 410 K D++S +PF +EK AVLQEAR F++ ++ R+C+ ++TK+LYLINQGE EA Sbjct: 7 KKDEESGGGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEA 66 Query: 411 TEVFFAVTKLFQSN 452 TE FFA+TKLFQSN Sbjct: 67 TEAFFAMTKLFQSN 80
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 86.3 bits (212), Expect = 3e-17 Identities = 41/74 (55%), Positives = 55/74 (74%) Frame = +3 Query: 231 KDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTKVEA 410 K D++S +PF +EK AVLQEAR F++ ++ R+C+ ++TK+LYLINQGE EA Sbjct: 7 KKDEESGGGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEA 66 Query: 411 TEVFFAVTKLFQSN 452 TE FFA+TKLFQSN Sbjct: 67 TEAFFAMTKLFQSN 80
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 74.7 bits (182), Expect = 1e-13 Identities = 35/75 (46%), Positives = 54/75 (72%) Frame = +3 Query: 225 MKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTKV 404 MK + D + + + ++K +VLQEARAF++ ++AR+C +++KL+Y+I QGES + Sbjct: 1 MKTNKKDEETGGNVYAHLDKTSVLQEARAFNETPINARKCCFILSKLIYIIQQGESIGRT 60 Query: 405 EATEVFFAVTKLFQS 449 EATE FF VTKL+QS Sbjct: 61 EATEAFFGVTKLWQS 75
>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 905 Score = 64.7 bits (156), Expect = 1e-10 Identities = 32/75 (42%), Positives = 48/75 (64%) Frame = +3 Query: 222 YMKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTK 401 Y KKDDD + S F + + V Q+ARAF+ + R+ ++++K+ YLI GE F + Sbjct: 3 YSKKDDDGDE---SIFANVNQVTVTQDARAFNSSSISPRKSRRLLSKIAYLIYTGEHFQE 59 Query: 402 VEATEVFFAVTKLFQ 446 +ATE+FF +TKLFQ Sbjct: 60 KQATELFFGITKLFQ 74
>COPG_YEAST (P32074) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 935 Score = 48.1 bits (113), Expect = 1e-05 Identities = 22/57 (38%), Positives = 41/57 (71%), Gaps = 1/57 (1%) Frame = +3 Query: 279 EKGAVLQEA-RAFHDPQLDARRCSQVITKLLYLINQGESFTKVEATEVFFAVTKLFQ 446 +K + Q+ F++ ++++RC +I++LL L+ QGE+F + EAT +FF+++KLFQ Sbjct: 19 DKMTIYQDCMNTFNESPVNSKRCRLLISRLLRLLAQGETFPQNEATALFFSISKLFQ 75
>MATK_ZANAE (Q9GHE5) Maturase K (Intron maturase)| Length = 512 Score = 35.8 bits (81), Expect = 0.052 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%) Frame = -3 Query: 448 DWNNLVTAKKTSVASTFVKDSPWLIK--YNNLVITCEHLL 335 +WNN++T KK+S F K++P L + YN+ V+ CE +L Sbjct: 191 NWNNIITPKKSSYG--FSKENPRLFRFLYNSYVVECESIL 228
>MATK_ANCDI (Q8MEC9) Maturase K (Intron maturase)| Length = 511 Score = 35.4 bits (80), Expect = 0.067 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%) Frame = -3 Query: 448 DWNNLVTAKKTSVASTFVKDSP---WLIKYNNLVITCEHLL 335 +WNNL+T KK+S F K++P W + YN+ V+ CE +L Sbjct: 191 NWNNLITQKKSSYG--FSKENPRLFWFL-YNSYVVECESIL 228
>MATK_ARITO (Q8MEC8) Maturase K (Intron maturase)| Length = 512 Score = 35.0 bits (79), Expect = 0.088 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%) Frame = -3 Query: 448 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 335 +WNNL+T KK++ F K++P +L YN+ V+ CE +L Sbjct: 191 NWNNLITPKKSNYYG-FSKENPRLFLFLYNSYVVECESIL 229
>MATK_AMOTI (Q8MED5) Maturase K (Intron maturase)| Length = 512 Score = 35.0 bits (79), Expect = 0.088 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%) Frame = -3 Query: 448 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 335 +WNNL+T KK++ F K++P +L YN+ V+ CE +L Sbjct: 191 NWNNLITPKKSNYYG-FSKENPRLFLFLYNSYVVECESIL 229
>MATK_AMOBY (Q8MEH7) Maturase K (Intron maturase)| Length = 512 Score = 35.0 bits (79), Expect = 0.088 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%) Frame = -3 Query: 448 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 335 +WNNL+T KK++ F K++P +L YN+ V+ CE +L Sbjct: 191 NWNNLITPKKSNYYG-FSKENPRLFLFLYNSYVVECESIL 229
>MATK_AMOPO (Q8MEE6) Maturase K (Intron maturase)| Length = 512 Score = 33.5 bits (75), Expect = 0.26 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 2/39 (5%) Frame = -3 Query: 448 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHL 338 +WNNL+T KK++ F K++P +L YN+ V+ CE + Sbjct: 191 NWNNLITPKKSNYYG-FSKENPRLFLFLYNSYVVECESI 228
>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3| Length = 944 Score = 32.0 bits (71), Expect = 0.74 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 8/63 (12%) Frame = +3 Query: 87 SGREKLGPVEAPEDTKPTRHPAP--------PLERRMPRSLAGDLTDPEMAQPYMKKDDD 242 +GR P P T PT AP PL AGD +P A P ++ D D Sbjct: 846 AGRSVQSPASTPPPT-PTPPSAPSAGQTRAMPLAANRSTDAAGDPAEPTAALPIIRSDGD 904 Query: 243 DSD 251 DS+ Sbjct: 905 DSE 907
>MATK_FILMA (Q8MEC7) Maturase K (Intron maturase)| Length = 512 Score = 31.6 bits (70), Expect = 0.97 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%) Frame = -3 Query: 448 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHL 338 +W+NL+T KK++ F K++P +L YN+ V+ CE + Sbjct: 191 NWSNLITPKKSNYYG-FSKENPRLFLFLYNSYVVECESI 228
>QUEA_THIDN (Q30PZ7) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 342 Score = 31.2 bits (69), Expect = 1.3 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Frame = +3 Query: 219 PYMKKDDD-DSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGE-S 392 PY++++D+ D +IEY F E+GAV + H + R T ++ G + Sbjct: 159 PYIQREDNKDDEIEYQSVFAKEEGAVAAPTASLHFTKEQHERVCTKFTHAYITLHVGSGT 218 Query: 393 FTKVEATEV 419 F VE ++ Sbjct: 219 FKPVECEKI 227
>VDH_STRCO (Q06539) Valine dehydrogenase (EC 1.4.1.-) (ValDH)| Length = 363 Score = 30.8 bits (68), Expect = 1.7 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = +3 Query: 207 EMAQPYMKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKL 365 ++A P ++KD D I Y+P + + G V+Q A H D RC +K+ Sbjct: 276 QLAHPGVEKDLADRGILYAPDYVVNAGGVIQVADELHG--FDFDRCKAKASKI 326
>TRP_DROME (P19334) Transient receptor potential protein| Length = 1275 Score = 30.8 bits (68), Expect = 1.7 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%) Frame = +3 Query: 99 KLGPVEAPEDTKPTRHPAPPLERRM----PRSLAGDLTDPEMAQPYMKKDDDDSD 251 K G APE TK T + P E++ P+ AGD + A+ KK DD D Sbjct: 1126 KPGAAGAPEATKATNGASKPDEKKSGPEEPKKAAGDSKPGDDAKDKDKKPGDDKD 1180
>VDH_STRAL (O69056) Valine dehydrogenase (EC 1.4.1.-) (ValDH)| Length = 363 Score = 30.4 bits (67), Expect = 2.2 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = +3 Query: 207 EMAQPYMKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKL 365 ++A P ++KD D I Y+P + + G V+Q A H D RC K+ Sbjct: 276 QLAHPGVEKDLADRGILYAPDYVVNAGGVIQVADELHG--FDFDRCKAKAAKI 326
>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2164 Score = 30.0 bits (66), Expect = 2.8 Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 21/67 (31%) Frame = +2 Query: 68 RPSLRRIRARKAWSG---RSPGGH-----------KAHPPPRS-------TIRTSHASLP 184 R S R AR+AW G R+PG + H PPR T R P Sbjct: 804 RESARDPDARRAWPGSPERAPGREGPYGRESELQQREHAPPREHAPWDADTERAKAGDAP 863 Query: 185 RRRPHRP 205 RR HRP Sbjct: 864 RRHTHRP 870
>MATK_CRAPL (Q5GAA8) Maturase K (Intron maturase)| Length = 507 Score = 30.0 bits (66), Expect = 2.8 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 11/61 (18%) Frame = -3 Query: 445 WNNLVTAKKTSVASTFVKDSPWLIKYNNLVITCE-----------HLLASSWGSWKARAS 299 WN+L+T KK S + + +L YN+ V E HLL++S+G + R Sbjct: 184 WNSLITPKKASSSFSKKNQRLFLFLYNSHVCEYEYFFVFIRKQSSHLLSTSYGVFLERIY 243 Query: 298 C 296 C Sbjct: 244 C 244
>KIF3C_RAT (O55165) Kinesin-like protein KIF3C| Length = 796 Score = 30.0 bits (66), Expect = 2.8 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +2 Query: 68 RPSLRRIRARKAWSGRSPGGHKAHPPPRSTIRTSHASLP 184 RPS ++R ++W +SP PPP ST+ S AS P Sbjct: 753 RPSTSKVRKSRSWC-QSP----QRPPPPSTVHASMASAP 786
>ZN384_HUMAN (Q8TF68) Zinc finger protein 384 (Nuclear matrix transcription| factor 4) (Nuclear matrix protein 4) (CAG repeat protein 1) (CAS-interacting zinc finger protein) Length = 576 Score = 29.6 bits (65), Expect = 3.7 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +3 Query: 147 PAPPLERRMPRSLAGDLTDPEMAQPYMKKDDDDSD 251 P PP R+ R L L PEM PY+ +DD D Sbjct: 188 PKPPRGRKKKRMLESGL--PEMNDPYVLSPEDDDD 220
>MATK_SPIIN (Q8WHM7) Maturase K (Intron maturase)| Length = 510 Score = 29.6 bits (65), Expect = 3.7 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = -3 Query: 442 NNLVTAKKTSVASTFVKDSPWLIK--YNNLVITCEHL 338 NN +T KK+S F KD+P L + YN+ V+ CE + Sbjct: 193 NNCITPKKSSYG--FSKDNPRLYRFLYNSYVVECESI 227
>HABP2_BOVIN (Q5E9Z2) Hyaluronan-binding protein 2 precursor (EC 3.4.21.-)| [Contains: Hyaluronan-binding protein 2 50 kDa heavy chain; Hyaluronan-binding protein 2 50 kDa heavy chain alternate form; Hyaluronan-binding protein 2 27 kDa light chain; Hyaluro Length = 558 Score = 29.3 bits (64), Expect = 4.8 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +3 Query: 327 LDARRCSQVITKLLYLINQGESFTKVEATEVFFAVTKLFQ 446 L A C+++ TK L ++ + TK E E F V K+F+ Sbjct: 356 LTAAHCTEIKTKYLKVVLGDQDLTKTEFHEQSFGVQKIFK 395
>IWS1_CANGA (Q6FVX3) Transcription factor IWS1| Length = 382 Score = 29.3 bits (64), Expect = 4.8 Identities = 13/50 (26%), Positives = 25/50 (50%) Frame = +3 Query: 108 PVEAPEDTKPTRHPAPPLERRMPRSLAGDLTDPEMAQPYMKKDDDDSDIE 257 PVEAP + P+E + ++ PE + +++ DDDD +++ Sbjct: 20 PVEAPVEAALEPSVEAPVEAPVESTVEAGEPAPERTRKHIESDDDDEEVQ 69
>ALX3_MOUSE (O70137) Homeobox protein aristaless-like 3 (Proline-rich| transcription factor ALX3) Length = 343 Score = 29.3 bits (64), Expect = 4.8 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = +3 Query: 87 SGREKLGPVEAPEDTKPTRHPAPPLERRMPRSLAGDLTDPEMAQP 221 +G E GP P D P HPAPP R+ R A +P + +P Sbjct: 21 AGDEAPGPQGTP-DAAPHLHPAPPRGPRLSRFPACGPLEPYLPEP 64
>ALX3_HUMAN (O95076) Homeobox protein aristaless-like 3 (Proline-rich| transcription factor ALX3) Length = 343 Score = 29.3 bits (64), Expect = 4.8 Identities = 18/47 (38%), Positives = 22/47 (46%) Frame = +3 Query: 81 VGSGREKLGPVEAPEDTKPTRHPAPPLERRMPRSLAGDLTDPEMAQP 221 V SG E GP P P HPAPP R+ R A +P + +P Sbjct: 19 VASGDEPPGPQGTPA-AAPHLHPAPPRGPRLTRFPACGPLEPYLPEP 64
>YQI9_CAEEL (Q09507) Hypothetical protein C45G9.9| Length = 294 Score = 29.3 bits (64), Expect = 4.8 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Frame = +3 Query: 129 TKPTRHPAPPLE-RRMPRSLAGDLTDPEM-----AQPYMKKDDDDSD 251 T P P P E + +P+ GD + P + A+ Y K+D DD D Sbjct: 165 TAPATLPPPSAESKHLPQDPPGDASSPRVQRQYTAEKYSKEDQDDDD 211
>MATK_NUPVA (O98635) Maturase K (Intron maturase)| Length = 505 Score = 29.3 bits (64), Expect = 4.8 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 2/40 (5%) Frame = -3 Query: 448 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 335 +WN+L+T KK++ S F K++ +L YN+ V CE +L Sbjct: 189 NWNSLITPKKST--SIFSKENQRLFLFLYNSHVYECESVL 226
>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 550 Score = 29.3 bits (64), Expect = 4.8 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 7/50 (14%) Frame = -3 Query: 196 RSPAR-ERGMRRSNGGAGWRVGFVSSGASTGPSFSR------PDPTQARP 68 R PA+ +RG A +R +V G STGPS R P QARP Sbjct: 366 RGPAKGDRGALPDGNPAAFRSWYVPDGVSTGPSGHRNAGPSGPGTGQARP 415
>YQI4_CAEEL (Q09505) Hypothetical protein C45G9.4| Length = 292 Score = 29.3 bits (64), Expect = 4.8 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Frame = +3 Query: 129 TKPTRHPAPPLE-RRMPRSLAGDLTDPEM-----AQPYMKKDDDDSD 251 T P P P E + +P+ GD + P + A+ Y K+D DD D Sbjct: 163 TAPATLPPPSAESKHLPQDPPGDASSPRVQRQYTAEKYSKEDQDDDD 209
>5NT1B_MOUSE (Q91YE9) Cytosolic 5'-nucleotidase 1B (EC 3.1.3.5) (Cytosolic| 5'-nucleotidase IB) (cN1B) (cN-IB) (Autoimmune infertility-related protein) Length = 573 Score = 29.3 bits (64), Expect = 4.8 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +2 Query: 107 SGRSPGGHKAHPPPRSTIRTSHASLPRRRP 196 S SP H+ PPP+++ ++S P+ RP Sbjct: 100 SSASPSQHETSPPPQTSEKSSTQQTPQNRP 129
>MATK_ACOCL (Q9GHG9) Maturase K (Intron maturase)| Length = 511 Score = 28.9 bits (63), Expect = 6.3 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = -3 Query: 448 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 335 +WN+L+T KK S++ F K + +L YN+ V CE L Sbjct: 190 NWNSLITPKK-SISFLFSKGNQRLFLFLYNSYVFECESAL 228
>MATK_NYMOD (O98637) Maturase K (Intron maturase)| Length = 509 Score = 28.9 bits (63), Expect = 6.3 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = -3 Query: 448 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 335 +WN+L+T+ S F K++ +L YN+ V CE +L Sbjct: 191 NWNSLITSTSNKSISIFSKENQRLFLFLYNSHVYECESVL 230
>NO75_LUPLU (Q06841) Early nodulin 75 protein (N-75) (NGM-75) (Fragment)| Length = 434 Score = 28.9 bits (63), Expect = 6.3 Identities = 22/57 (38%), Positives = 23/57 (40%) Frame = +3 Query: 96 EKLGPVEAPEDTKPTRHPAPPLERRMPRSLAGDLTDPEMAQPYMKKDDDDSDIEYSP 266 EK PV P D KP PPLE+ P P AQP D IEY P Sbjct: 198 EKPPPVHPPPDEKPPIEYPPPLEK--PPVHEPPYEKPPPAQP---PPHDKPPIEYPP 249
>MALR_STRR6 (P0A4T2) HTH-type transcriptional regulator malR (Maltose operon| transcriptional repressor) Length = 327 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +3 Query: 195 LTDPEMAQPYMKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDA 335 LT E A + K D++ I ++ F EKG + HDPQ+DA Sbjct: 199 LTGYEQALKHYKLTTDNNRIYFADEFLEEKGYKFSKRLFKHDPQIDA 245
>MALR_STRPN (P0A4T1) HTH-type transcriptional regulator malR (Maltose operon| transcriptional repressor) Length = 327 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +3 Query: 195 LTDPEMAQPYMKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDA 335 LT E A + K D++ I ++ F EKG + HDPQ+DA Sbjct: 199 LTGYEQALKHYKLTTDNNRIYFADEFLEEKGYKFSKRLFKHDPQIDA 245
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 28.5 bits (62), Expect = 8.2 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 13/58 (22%) Frame = +2 Query: 71 PSLRRIRARKAWSGRSPGGHKAHP-------------PPRSTIRTSHASLPRRRPHRP 205 P RR R+ + SG S + PPR T R S ++ P RR HRP Sbjct: 342 PGRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRP 399
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2158 Score = 28.5 bits (62), Expect = 8.2 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +3 Query: 84 GSGREKLGPVEAPEDTKPTRHPAPPLERRMPRSLAGDLTDPEMAQP 221 G R K GP +AP+ + P PP PR+ + +DP +P Sbjct: 1491 GHPRPKPGPPQAPQGSSPR----PPTRYDPPRASSAISSDPHFEEP 1532
>MATK_LENCU (Q8MCR6) Maturase K (Intron maturase)| Length = 507 Score = 28.5 bits (62), Expect = 8.2 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Frame = -3 Query: 448 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEH 341 +WN+ +T KK STF K +P +L YN V CE+ Sbjct: 183 NWNSFITTKKKKSISTFSKINPRFFLFLYNFYV--CEY 218
>TIM54_DEBHA (Q6BTN1) Mitochondrial import inner membrane translocase subunit| TIM54 Length = 495 Score = 28.5 bits (62), Expect = 8.2 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 11/72 (15%) Frame = +3 Query: 69 GRACVGSGREK----------LGPVEAPEDTKPTRHPAPPLERRMPRSLAGDLTDPEMAQ 218 G C+G G K LGP+EAPE+ + P + P + D + + Sbjct: 242 GVICIGRGAYKEYMTGVHEGLLGPLEAPEEVRTITEVDPQVTENEPETAHNDNESKAVVE 301 Query: 219 -PYMKKDDDDSD 251 P + DD +D Sbjct: 302 LPVLPTDDLPAD 313
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +2 Query: 113 RSPGGHKAHPPPRSTIRTSHASLPRRRPHRP 205 + P PPR T R S ++ P RR HRP Sbjct: 368 KKPPKRTVSSPPRKTRRLSPSASPPRRRHRP 398
>QUEA_CAMJE (Q9PHT9) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 342 Score = 28.5 bits (62), Expect = 8.2 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Frame = +3 Query: 219 PYMKKDDDDSDI-EYSPFFGIEKGAVLQEARAFH--DPQLDARRCSQVITKLLYLINQGE 389 PY+K++D+ SD+ +Y F GAV + H + L+ R I L + G Sbjct: 160 PYIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG- 218 Query: 390 SFTKVEATEV 419 +F VE + Sbjct: 219 TFKSVECENI 228
>YS86_CAEEL (Q09382) Hypothetical protein ZK945.6| Length = 216 Score = 28.5 bits (62), Expect = 8.2 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +3 Query: 153 PPLERRMPRSLAGDLTDPEMAQPYMKKDDDDSDIEYSP 266 P L +M S A DL+ M Q Y+K DD D+ + P Sbjct: 79 PSLNTQMSFSTASDLSS--MEQDYVKASDDPFDLNHQP 114 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,694,338 Number of Sequences: 219361 Number of extensions: 1151883 Number of successful extensions: 5140 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 4754 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5128 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
