ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl07c08 |
|---|---|
| Clone Library Name | barley_pub |
>YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region| Length = 153 Score = 37.7 bits (86), Expect = 0.015 Identities = 21/59 (35%), Positives = 28/59 (47%) Frame = +3 Query: 285 PHQPGLPTPPSPRPQSAYEPGRSARKTHTTCSTYCFGRPIRSPSAPLMDSLPHSVVLRP 461 PH P T P+P P + P HTT S P P++PL+ +LPHS + P Sbjct: 49 PHTPHPHTTPTPTPHHTHTP-------HTTLSNLSLNLPSHYPTSPLV-TLPHSTIPLP 99
>IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2| Length = 924 Score = 33.1 bits (74), Expect = 0.37 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = +3 Query: 285 PHQPGLPTPPSPRPQSAYEPGRSARK--THTTCSTYCFGRPIRSPSAPLMDSLPHSVVLR 458 P PG+PT P P P A +PG + + S RPI P AP + P S+ R Sbjct: 153 PGHPGMPTGPHPGP--APKPGGRPPRVGNNPFSSAQSVARPIPRPPAPRPSASPSSMSPR 210 Query: 459 P 461 P Sbjct: 211 P 211
>IRX1_HUMAN (P78414) Iroquois-class homeodomain protein IRX-1 (Iroquois| homeobox protein 1) (Homeodomain protein IRXA1) Length = 480 Score = 32.7 bits (73), Expect = 0.49 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 12/62 (19%) Frame = +3 Query: 285 PHQPGLPTPPSPRPQSAYEPG------RSARKTHTTCSTYCFGRP------IRSPSAPLM 428 PH P LP PP P+P A PG S R + T RP ++SP P+ Sbjct: 401 PHGPHLPAPPPPQPPVAIAPGALNGDKASVRSSPTLPERDLVPRPDSPAQQLKSPFQPVR 460 Query: 429 DS 434 D+ Sbjct: 461 DN 462
>HXA3_MOUSE (P02831) Homeobox protein Hox-A3 (Hox-1.5) (MO-10)| Length = 443 Score = 32.7 bits (73), Expect = 0.49 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +3 Query: 285 PHQPGLPTPPSPRPQSAYEPGRSARKTHTTCST 383 P QP PTP +P P S+ P +SA T ST Sbjct: 109 PPQPPAPTPAAPPPPSSVSPPQSANSNPTPAST 141
>RIN3_MOUSE (P59729) Ras and Rab interactor 3 (Ras interaction/interference| protein 3) Length = 980 Score = 32.0 bits (71), Expect = 0.83 Identities = 20/57 (35%), Positives = 24/57 (42%) Frame = +3 Query: 300 LPTPPSPRPQSAYEPGRSARKTHTTCSTYCFGRPIRSPSAPLMDSLPHSVVLRPLNP 470 LP P P P +Y P R T S G P R P P + ++P RPL P Sbjct: 241 LPADPPPLPTGSYPP-RPTPATPDATSPTSKGSPRRPPPPPPLPTVPPIGPARPLAP 296
>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) (Brain-derived HLMN protein) Length = 5038 Score = 30.4 bits (67), Expect = 2.4 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +3 Query: 291 QPGLPTPPSPRPQSAYEPGRSARKTHTTCSTYCFGRPIRSP 413 QP PTP P+PQ SA++ + S GRP+++P Sbjct: 445 QPQQPTPAKPQPQQPGLGKPSAQQPSKSISQTVTGRPLQAP 485
>IBMP_CAMVS (P03559) Inclusion body matrix protein (Viroplasmin)| Length = 520 Score = 30.0 bits (66), Expect = 3.2 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +3 Query: 282 RPHQPGLPTPPSPRPQSAYEPGR 350 RPHQ G+P PP P P S+ P R Sbjct: 107 RPHQ-GIPIPPKPEPSSSVAPLR 128
>IE63_HHV11 (P10238) Transcriptional regulator IE63 (VMW63) (ICP27)| Length = 512 Score = 30.0 bits (66), Expect = 3.2 Identities = 15/44 (34%), Positives = 19/44 (43%) Frame = +3 Query: 282 RPHQPGLPTPPSPRPQSAYEPGRSARKTHTTCSTYCFGRPIRSP 413 RP PG+P+ +PRP P H+ S RP SP Sbjct: 74 RPEDPGVPSTQTPRPTERQGPNDPQPAPHSVWSRLGARRPSCSP 117
>IE63_HHV1E (P36295) Transcriptional regulator IE63 (VMW63) (ICP27)| Length = 511 Score = 30.0 bits (66), Expect = 3.2 Identities = 15/44 (34%), Positives = 19/44 (43%) Frame = +3 Query: 282 RPHQPGLPTPPSPRPQSAYEPGRSARKTHTTCSTYCFGRPIRSP 413 RP PG+P+ +PRP P H+ S RP SP Sbjct: 74 RPEDPGVPSTQTPRPTERQGPNDPQPAPHSVWSRLGARRPSCSP 117
>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2160 Score = 29.6 bits (65), Expect = 4.1 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +3 Query: 282 RPHQPGLPTPPSPRPQSAYEPGR 350 +P P P PSPRP + YEP R Sbjct: 1503 KPGPPQTPQGPSPRPPTRYEPQR 1525
>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2157 Score = 29.6 bits (65), Expect = 4.1 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +3 Query: 282 RPHQPGLPTPPSPRPQSAYEPGR 350 +P P P PSPRP + YEP R Sbjct: 1500 KPGPPQAPQGPSPRPPTRYEPQR 1522
>HES5_RAT (Q03062) Transcription factor HES-5 (Hairy and enhancer of split 5)| Length = 166 Score = 29.3 bits (64), Expect = 5.4 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = +3 Query: 282 RPHQPGLPTPPSPRPQSAYEPGRSARKTHTTCST 383 RP P P +P P +A +P RS+ K + ST Sbjct: 121 RPPAPAAPVKETPTPGAAPQPARSSTKAAASVST 154
>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)| Length = 5183 Score = 29.3 bits (64), Expect = 5.4 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 13/68 (19%) Frame = +3 Query: 285 PHQPGLPTPPSPRPQSAYEPGR-------SARKTHTTCSTYCFGRPIR----SPSA--PL 425 P QPG PPS +P SA + SA++ S FG+P++ SPSA P Sbjct: 467 PQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQFTKPVSQTGFGKPLQPPTVSPSAKQPP 526 Query: 426 MDSLPHSV 449 LP ++ Sbjct: 527 SQGLPKTI 534
>CHCH2_HUMAN (Q9Y6H1) Coiled-coil-helix-coiled-coil-helix domain-containing| protein 2 (HCV NS2 trans-regulated protein) (NS2TP) Length = 151 Score = 29.3 bits (64), Expect = 5.4 Identities = 17/35 (48%), Positives = 21/35 (60%) Frame = +1 Query: 319 RGHRARTSRDAQPARRTPPVRRIVSAGQSGPRALP 423 RG R+RTSR A PA R P +R +A + P A P Sbjct: 3 RGSRSRTSRMAPPASRAPQMR---AAPRPAPVAQP 34
>DH4C_PSEPU (P09788) 4-cresol dehydrogenase [hydroxylating] flavoprotein| subunit (EC 1.17.99.1) (P-cresol methylhydroxylase) (PCMH) Length = 520 Score = 28.9 bits (63), Expect = 7.1 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = +2 Query: 350 LSPQDAHHLFDVLFRQANPVPERSLD 427 ++P+D HH+ DVL+ + NP + D Sbjct: 429 VAPRDMHHVIDVLYDRTNPEETKRAD 454
>CJ046_RAT (Q5XI53) Protein C10orf46 homolog| Length = 347 Score = 28.9 bits (63), Expect = 7.1 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%) Frame = +3 Query: 285 PHQPGLPTPPSPRPQSAY-EPGR 350 P P LP PP PRP S+ +PGR Sbjct: 36 PPAPPLPPPPPPRPSSSIPDPGR 58
>CJ046_MOUSE (Q8R0X2) Protein C10orf46 homolog| Length = 377 Score = 28.9 bits (63), Expect = 7.1 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%) Frame = +3 Query: 285 PHQPGLPTPPSPRPQSAY-EPGR 350 P P LP PP PRP S+ +PGR Sbjct: 36 PPAPPLPPPPPPRPSSSIPDPGR 58
>SOX18_HUMAN (P35713) Transcription factor SOX-18| Length = 384 Score = 28.9 bits (63), Expect = 7.1 Identities = 17/42 (40%), Positives = 19/42 (45%) Frame = +3 Query: 297 GLPTPPSPRPQSAYEPGRSARKTHTTCSTYCFGRPIRSPSAP 422 GLPTP P EPG +A C RP R+P AP Sbjct: 211 GLPTPERS-PLDGLEPGEAAFFPPPAAPEDCALRPFRAPYAP 251
>COL8_CAEEL (P18833) Cuticle collagen 8 precursor| Length = 282 Score = 28.9 bits (63), Expect = 7.1 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%) Frame = +3 Query: 282 RPHQPGLPTPPSPR--PQSAYEPGRSAR 359 RP G P PP PR P + Y PG++ R Sbjct: 184 RPGAAGCPGPPGPRGEPGTEYRPGQAGR 211
>CHCH2_MOUSE (Q9D1L0) Coiled-coil-helix-coiled-coil-helix domain-containing| protein 2 Length = 153 Score = 28.5 bits (62), Expect = 9.2 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = +1 Query: 319 RGHRARTSRDAQPARRTPPVRRIVSAGQSGPRALP 423 RG R+RTSR PA R P +R +A + P A P Sbjct: 3 RGSRSRTSRVTPPASRAPQMR---AAPRRAPAAQP 34
>VG14_BPMD2 (O64207) Gene 14 protein (Gp14)| Length = 485 Score = 28.5 bits (62), Expect = 9.2 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Frame = +3 Query: 285 PHQPGLPTP-PSPRPQSAYEPGRSA 356 P PG P P P+P+PQ A E G SA Sbjct: 461 PTVPGSPNPTPAPKPQPAIEGGDSA 485 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,188,721 Number of Sequences: 219361 Number of extensions: 839974 Number of successful extensions: 4962 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4103 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4883 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
