ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl07c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
2dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
3dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
4ref|NM_193193.1| Oryza sativa (japonica cultivar-group), predic... 84 5e-13
5gb|AC073042.7| Homo sapiens BAC clone CTD-2105K18 from 7, comple... 44 0.39
6gb|AF037035.1|AF037035 Zea mays peroxidase K gene, partial cds 44 0.39
7gb|AE011760.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.6
8gb|BC026950.1| Mus musculus kynureninase (L-kynurenine hydrolase... 42 1.6
9emb|AL845336.9| Mouse DNA sequence from clone RP23-391P24 on chr... 42 1.6
10gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 6.2
11emb|Z95152.1|HS179N16 Human DNA sequence from clone RP1-179N16 o... 40 6.2
12emb|X92498.1|MMFKH6 M.musculus fkh-6 gene 40 6.2
13emb|BX537304.14| Zebrafish DNA sequence from clone CH211-283H6 i... 40 6.2
14ref|NM_008024.1| Mus musculus forkhead box L1 (Foxl1), mRNA 40 6.2
15gb|AY105066.1| Zea mays PCO110907 mRNA sequence 40 6.2
16emb|CR385061.15| Zebrafish DNA sequence from clone BUSM1-20K6, c... 40 6.2

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  155 bits (78), Expect = 2e-34
 Identities = 170/200 (85%), Gaps = 3/200 (1%)
 Strand = Plus / Minus

                                                                            
Query: 249      caacagcctcctcagttcatgcaaccagcgccacaacagtatcgacctgttggtcaggcc 308
                ||||| |||||||||||||||||||| | ||   | |||| |||||||||||||||||||
Sbjct: 19186990 caacaacctcctcagttcatgcaaccggggc---agcagtttcgacctgttggtcaggcc 19186934

                                                                            
Query: 309      atgccaggagttaacatgggcatgccagggcagatgcaacattttcagcaacctgggcca 368
                |||||||||| ||| || ||||||||||| ||||||| ||||||||||||||||   |  
Sbjct: 19186933 atgccaggagctaatattggcatgccaggtcagatgccacattttcagcaacctacacag 19186874

                                                                            
Query: 369      catatgcctcattctggtcatgttccgcctgcatcacaagctgttcctatgctataccag 428
                ||  ||||||| |||||||| ||||| |||||||||||||| |||||||||   || |||
Sbjct: 19186873 cacttgcctcactctggtcaagttccacctgcatcacaagcagttcctatggcttatcag 19186814

                                    
Query: 429      gcagttagacctatgtcatc 448
                 ||| |||||||||||||||
Sbjct: 19186813 ccagctagacctatgtcatc 19186794



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>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0702H08
          Length = 166899

 Score =  155 bits (78), Expect = 2e-34
 Identities = 170/200 (85%), Gaps = 3/200 (1%)
 Strand = Plus / Minus

                                                                          
Query: 249    caacagcctcctcagttcatgcaaccagcgccacaacagtatcgacctgttggtcaggcc 308
              ||||| |||||||||||||||||||| | ||   | |||| |||||||||||||||||||
Sbjct: 152407 caacaacctcctcagttcatgcaaccggggc---agcagtttcgacctgttggtcaggcc 152351

                                                                          
Query: 309    atgccaggagttaacatgggcatgccagggcagatgcaacattttcagcaacctgggcca 368
              |||||||||| ||| || ||||||||||| ||||||| ||||||||||||||||   |  
Sbjct: 152350 atgccaggagctaatattggcatgccaggtcagatgccacattttcagcaacctacacag 152291

                                                                          
Query: 369    catatgcctcattctggtcatgttccgcctgcatcacaagctgttcctatgctataccag 428
              ||  ||||||| |||||||| ||||| |||||||||||||| |||||||||   || |||
Sbjct: 152290 cacttgcctcactctggtcaagttccacctgcatcacaagcagttcctatggcttatcag 152231

                                  
Query: 429    gcagttagacctatgtcatc 448
               ||| |||||||||||||||
Sbjct: 152230 ccagctagacctatgtcatc 152211



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>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:OJ1619_F12
          Length = 133028

 Score =  155 bits (78), Expect = 2e-34
 Identities = 170/200 (85%), Gaps = 3/200 (1%)
 Strand = Plus / Minus

                                                                        
Query: 249  caacagcctcctcagttcatgcaaccagcgccacaacagtatcgacctgttggtcaggcc 308
            ||||| |||||||||||||||||||| | ||   | |||| |||||||||||||||||||
Sbjct: 6611 caacaacctcctcagttcatgcaaccggggc---agcagtttcgacctgttggtcaggcc 6555

                                                                        
Query: 309  atgccaggagttaacatgggcatgccagggcagatgcaacattttcagcaacctgggcca 368
            |||||||||| ||| || ||||||||||| ||||||| ||||||||||||||||   |  
Sbjct: 6554 atgccaggagctaatattggcatgccaggtcagatgccacattttcagcaacctacacag 6495

                                                                        
Query: 369  catatgcctcattctggtcatgttccgcctgcatcacaagctgttcctatgctataccag 428
            ||  ||||||| |||||||| ||||| |||||||||||||| |||||||||   || |||
Sbjct: 6494 cacttgcctcactctggtcaagttccacctgcatcacaagcagttcctatggcttatcag 6435

                                
Query: 429  gcagttagacctatgtcatc 448
             ||| |||||||||||||||
Sbjct: 6434 ccagctagacctatgtcatc 6415



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>ref|NM_193193.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3177

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 77/88 (87%), Gaps = 3/88 (3%)
 Strand = Plus / Plus

                                                                       
Query: 249 caacagcctcctcagttcatgcaaccagcgccacaacagtatcgacctgttggtcaggcc 308
           ||||| |||||||||||||||||||| | ||   | |||| |||||||||||||||||||
Sbjct: 529 caacaacctcctcagttcatgcaaccggggc---agcagtttcgacctgttggtcaggcc 585

                                       
Query: 309 atgccaggagttaacatgggcatgccag 336
           |||||||||| ||| || ||||||||||
Sbjct: 586 atgccaggagctaatattggcatgccag 613



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>gb|AC073042.7| Homo sapiens BAC clone CTD-2105K18 from 7, complete sequence
          Length = 182038

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 255   cctcctcagttcatgcaaccag 276
             ||||||||||||||||||||||
Sbjct: 64402 cctcctcagttcatgcaaccag 64423



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>gb|AF037035.1|AF037035 Zea mays peroxidase K gene, partial cds
          Length = 1629

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 22   actcgactctcgagtctcgacc 43
            ||||||||||||||||||||||
Sbjct: 1198 actcgactctcgagtctcgacc 1219



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>gb|AE011760.1| Xanthomonas axonopodis pv. citri str. 306,  section 138 of 469 of the
            complete genome
          Length = 11677

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 221  gcccatgcagtggccaccaggtccgccac 249
            ||||||||||||| |||||||| ||||||
Sbjct: 5599 gcccatgcagtggacaccaggtgcgccac 5627



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>gb|BC026950.1| Mus musculus kynureninase (L-kynurenine hydrolase), mRNA (cDNA clone
            MGC:30315 IMAGE:5136970), complete cds
          Length = 2800

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 302  tcaggccatgccaggagttaa 322
            |||||||||||||||||||||
Sbjct: 1054 tcaggccatgccaggagttaa 1074



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>emb|AL845336.9| Mouse DNA sequence from clone RP23-391P24 on chromosome 2, complete
              sequence
          Length = 176778

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 302    tcaggccatgccaggagttaa 322
              |||||||||||||||||||||
Sbjct: 153500 tcaggccatgccaggagttaa 153520



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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 344     gcaacattttcagcaacctgggccacat 371
               ||||| ||||||||||||||||| ||||
Sbjct: 1736624 gcaactttttcagcaacctgggcgacat 1736597



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>emb|Z95152.1|HS179N16 Human DNA sequence from clone RP1-179N16 on chromosome 6p21.1-21.33
             Contains the MAPK13 and  MAPK14 genes for
             mitogen-activated protein kinase 13 and 14 , a nudix type
             5 motif (nudt5) pseudogene, the 5' end of the SLC26A8 gene
             for solute carrier family 26 member 8 and two CpG islands,
             complete sequence
          Length = 172048

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   gcatgccagggcagatgcaa 347
             ||||||||||||||||||||
Sbjct: 61952 gcatgccagggcagatgcaa 61971



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>emb|X92498.1|MMFKH6 M.musculus fkh-6 gene
          Length = 1761

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 tgcagtggccaccaggtccg 245
           ||||||||||||||||||||
Sbjct: 814 tgcagtggccaccaggtccg 795



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>emb|BX537304.14| Zebrafish DNA sequence from clone CH211-283H6 in linkage group 5,
             complete sequence
          Length = 157564

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    tggactcgactctcgagtct 38
             ||||||||||||||||||||
Sbjct: 82904 tggactcgactctcgagtct 82885



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>ref|NM_008024.1| Mus musculus forkhead box L1 (Foxl1), mRNA
          Length = 1014

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 tgcagtggccaccaggtccg 245
           ||||||||||||||||||||
Sbjct: 537 tgcagtggccaccaggtccg 518



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>gb|AY105066.1| Zea mays PCO110907 mRNA sequence
          Length = 1274

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ctcgactctcgagtctcgac 42
          ||||||||||||||||||||
Sbjct: 63 ctcgactctcgagtctcgac 82



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>emb|CR385061.15| Zebrafish DNA sequence from clone BUSM1-20K6, complete sequence
          Length = 79139

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    tggactcgactctcgagtct 38
             ||||||||||||||||||||
Sbjct: 64046 tggactcgactctcgagtct 64027


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,848,031
Number of Sequences: 3902068
Number of extensions: 2848031
Number of successful extensions: 47644
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47582
Number of HSP's gapped (non-prelim): 62
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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