Clone Name | bastl07c05 |
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Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 155 bits (78), Expect = 2e-34 Identities = 170/200 (85%), Gaps = 3/200 (1%) Strand = Plus / Minus Query: 249 caacagcctcctcagttcatgcaaccagcgccacaacagtatcgacctgttggtcaggcc 308 ||||| |||||||||||||||||||| | || | |||| ||||||||||||||||||| Sbjct: 19186990 caacaacctcctcagttcatgcaaccggggc---agcagtttcgacctgttggtcaggcc 19186934 Query: 309 atgccaggagttaacatgggcatgccagggcagatgcaacattttcagcaacctgggcca 368 |||||||||| ||| || ||||||||||| ||||||| |||||||||||||||| | Sbjct: 19186933 atgccaggagctaatattggcatgccaggtcagatgccacattttcagcaacctacacag 19186874 Query: 369 catatgcctcattctggtcatgttccgcctgcatcacaagctgttcctatgctataccag 428 || ||||||| |||||||| ||||| |||||||||||||| ||||||||| || ||| Sbjct: 19186873 cacttgcctcactctggtcaagttccacctgcatcacaagcagttcctatggcttatcag 19186814 Query: 429 gcagttagacctatgtcatc 448 ||| ||||||||||||||| Sbjct: 19186813 ccagctagacctatgtcatc 19186794
>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702H08 Length = 166899 Score = 155 bits (78), Expect = 2e-34 Identities = 170/200 (85%), Gaps = 3/200 (1%) Strand = Plus / Minus Query: 249 caacagcctcctcagttcatgcaaccagcgccacaacagtatcgacctgttggtcaggcc 308 ||||| |||||||||||||||||||| | || | |||| ||||||||||||||||||| Sbjct: 152407 caacaacctcctcagttcatgcaaccggggc---agcagtttcgacctgttggtcaggcc 152351 Query: 309 atgccaggagttaacatgggcatgccagggcagatgcaacattttcagcaacctgggcca 368 |||||||||| ||| || ||||||||||| ||||||| |||||||||||||||| | Sbjct: 152350 atgccaggagctaatattggcatgccaggtcagatgccacattttcagcaacctacacag 152291 Query: 369 catatgcctcattctggtcatgttccgcctgcatcacaagctgttcctatgctataccag 428 || ||||||| |||||||| ||||| |||||||||||||| ||||||||| || ||| Sbjct: 152290 cacttgcctcactctggtcaagttccacctgcatcacaagcagttcctatggcttatcag 152231 Query: 429 gcagttagacctatgtcatc 448 ||| ||||||||||||||| Sbjct: 152230 ccagctagacctatgtcatc 152211
>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1619_F12 Length = 133028 Score = 155 bits (78), Expect = 2e-34 Identities = 170/200 (85%), Gaps = 3/200 (1%) Strand = Plus / Minus Query: 249 caacagcctcctcagttcatgcaaccagcgccacaacagtatcgacctgttggtcaggcc 308 ||||| |||||||||||||||||||| | || | |||| ||||||||||||||||||| Sbjct: 6611 caacaacctcctcagttcatgcaaccggggc---agcagtttcgacctgttggtcaggcc 6555 Query: 309 atgccaggagttaacatgggcatgccagggcagatgcaacattttcagcaacctgggcca 368 |||||||||| ||| || ||||||||||| ||||||| |||||||||||||||| | Sbjct: 6554 atgccaggagctaatattggcatgccaggtcagatgccacattttcagcaacctacacag 6495 Query: 369 catatgcctcattctggtcatgttccgcctgcatcacaagctgttcctatgctataccag 428 || ||||||| |||||||| ||||| |||||||||||||| ||||||||| || ||| Sbjct: 6494 cacttgcctcactctggtcaagttccacctgcatcacaagcagttcctatggcttatcag 6435 Query: 429 gcagttagacctatgtcatc 448 ||| ||||||||||||||| Sbjct: 6434 ccagctagacctatgtcatc 6415
>ref|NM_193193.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3177 Score = 83.8 bits (42), Expect = 5e-13 Identities = 77/88 (87%), Gaps = 3/88 (3%) Strand = Plus / Plus Query: 249 caacagcctcctcagttcatgcaaccagcgccacaacagtatcgacctgttggtcaggcc 308 ||||| |||||||||||||||||||| | || | |||| ||||||||||||||||||| Sbjct: 529 caacaacctcctcagttcatgcaaccggggc---agcagtttcgacctgttggtcaggcc 585 Query: 309 atgccaggagttaacatgggcatgccag 336 |||||||||| ||| || |||||||||| Sbjct: 586 atgccaggagctaatattggcatgccag 613
>gb|AC073042.7| Homo sapiens BAC clone CTD-2105K18 from 7, complete sequence Length = 182038 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 255 cctcctcagttcatgcaaccag 276 |||||||||||||||||||||| Sbjct: 64402 cctcctcagttcatgcaaccag 64423
>gb|AF037035.1|AF037035 Zea mays peroxidase K gene, partial cds Length = 1629 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 22 actcgactctcgagtctcgacc 43 |||||||||||||||||||||| Sbjct: 1198 actcgactctcgagtctcgacc 1219
>gb|AE011760.1| Xanthomonas axonopodis pv. citri str. 306, section 138 of 469 of the complete genome Length = 11677 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 221 gcccatgcagtggccaccaggtccgccac 249 ||||||||||||| |||||||| |||||| Sbjct: 5599 gcccatgcagtggacaccaggtgcgccac 5627
>gb|BC026950.1| Mus musculus kynureninase (L-kynurenine hydrolase), mRNA (cDNA clone MGC:30315 IMAGE:5136970), complete cds Length = 2800 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 302 tcaggccatgccaggagttaa 322 ||||||||||||||||||||| Sbjct: 1054 tcaggccatgccaggagttaa 1074
>emb|AL845336.9| Mouse DNA sequence from clone RP23-391P24 on chromosome 2, complete sequence Length = 176778 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 302 tcaggccatgccaggagttaa 322 ||||||||||||||||||||| Sbjct: 153500 tcaggccatgccaggagttaa 153520
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 344 gcaacattttcagcaacctgggccacat 371 ||||| ||||||||||||||||| |||| Sbjct: 1736624 gcaactttttcagcaacctgggcgacat 1736597
>emb|Z95152.1|HS179N16 Human DNA sequence from clone RP1-179N16 on chromosome 6p21.1-21.33 Contains the MAPK13 and MAPK14 genes for mitogen-activated protein kinase 13 and 14 , a nudix type 5 motif (nudt5) pseudogene, the 5' end of the SLC26A8 gene for solute carrier family 26 member 8 and two CpG islands, complete sequence Length = 172048 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 gcatgccagggcagatgcaa 347 |||||||||||||||||||| Sbjct: 61952 gcatgccagggcagatgcaa 61971
>emb|X92498.1|MMFKH6 M.musculus fkh-6 gene Length = 1761 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 tgcagtggccaccaggtccg 245 |||||||||||||||||||| Sbjct: 814 tgcagtggccaccaggtccg 795
>emb|BX537304.14| Zebrafish DNA sequence from clone CH211-283H6 in linkage group 5, complete sequence Length = 157564 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tggactcgactctcgagtct 38 |||||||||||||||||||| Sbjct: 82904 tggactcgactctcgagtct 82885
>ref|NM_008024.1| Mus musculus forkhead box L1 (Foxl1), mRNA Length = 1014 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 tgcagtggccaccaggtccg 245 |||||||||||||||||||| Sbjct: 537 tgcagtggccaccaggtccg 518
>gb|AY105066.1| Zea mays PCO110907 mRNA sequence Length = 1274 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ctcgactctcgagtctcgac 42 |||||||||||||||||||| Sbjct: 63 ctcgactctcgagtctcgac 82
>emb|CR385061.15| Zebrafish DNA sequence from clone BUSM1-20K6, complete sequence Length = 79139 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tggactcgactctcgagtct 38 |||||||||||||||||||| Sbjct: 64046 tggactcgactctcgagtct 64027 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,848,031 Number of Sequences: 3902068 Number of extensions: 2848031 Number of successful extensions: 47644 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47582 Number of HSP's gapped (non-prelim): 62 length of query: 457 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 435 effective length of database: 17,147,199,772 effective search space: 7459031900820 effective search space used: 7459031900820 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)