ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl07b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2 77 2e-14
2UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1 77 2e-14
3UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3 36 0.041
4NUPL_XENLA (P05221) Nucleoplasmin 31 1.7
5CP2DQ_RAT (P10634) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26... 29 5.0
6CP2DP_PIG (O46658) Cytochrome P450 2D25 (EC 1.14.14.-) (CYPIID25... 29 5.0
7FOXK2_HUMAN (Q01167) Forkhead box protein K2 (Interleukin enhanc... 29 6.6
8CP2DH_MACFA (Q29488) Cytochrome P450 2D17 (EC 1.14.14.1) (CYPIID17) 28 8.6
9CP2D6_HUMAN (P10635) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6... 28 8.6

>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 40/57 (70%), Positives = 40/57 (70%)
 Frame = +3

Query: 288 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVYGR 458
           MLPRKREIVAGEVEDLQKK                MA RGNEIDEDLHSRQLAVYGR
Sbjct: 1   MLPRKREIVAGEVEDLQKKTRAGEGEATREEGDAAMAGRGNEIDEDLHSRQLAVYGR 57



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>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 40/57 (70%), Positives = 40/57 (70%)
 Frame = +3

Query: 288 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVYGR 458
           MLPRKREIVAGEVEDLQKK                MA RGNEIDEDLHSRQLAVYGR
Sbjct: 1   MLPRKREIVAGEVEDLQKKTRAGEGEVTREEGDAAMAGRGNEIDEDLHSRQLAVYGR 57



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>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3|
          Length = 1053

 Score = 36.2 bits (82), Expect = 0.041
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +3

Query: 411 EIDEDLHSRQLAVYGR 458
           EIDEDLHSRQLAVYGR
Sbjct: 45  EIDEDLHSRQLAVYGR 60



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>NUPL_XENLA (P05221) Nucleoplasmin|
          Length = 200

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 19/77 (24%), Positives = 30/77 (38%)
 Frame = -2

Query: 272 AEEPEDGRRRSEEQAVVDGRRELPRQIQRVRPPRNLHRPGTSXXXXXXXXXXXGRADPAE 93
           A E +      E++   +G  E   +  +  PP+ + RP  +            + D + 
Sbjct: 119 AMEEDYSWAEEEDEGEAEGEEEEEEEEDQESPPKAVKRPAATKKAGQAKKKKLDKEDESS 178

Query: 92  LTLDSPVASGKEAGEGR 42
              DSP   GK AG GR
Sbjct: 179 EE-DSPTKKGKGAGRGR 194



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>CP2DQ_RAT (P10634) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26) (P450-DB2)|
           (P450-CMF2) (Debrisoquine 4-hydroxylase)
          Length = 500

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -2

Query: 425 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 330
           +LVDLV         + PG +PLPG G LLQV
Sbjct: 21  LLVDLVHRHKFWTAHYPPGPVPLPGLGNLLQV 52



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>CP2DP_PIG (O46658) Cytochrome P450 2D25 (EC 1.14.14.-) (CYPIID25) (Vitamin|
           D(3) 25-hydroxylase)
          Length = 499

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 425 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 330
           +LVDL+         + PG +PLPG G LLQV
Sbjct: 20  LLVDLMHRRSRWAPRYPPGPMPLPGLGNLLQV 51



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>FOXK2_HUMAN (Q01167) Forkhead box protein K2 (Interleukin enhancer-binding|
           factor 1) (Cellular transcription factor ILF-1)
          Length = 655

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 272 AEEPEDGRRRSEEQAVVDGRRELPRQIQRVRPPRNLHRPG 153
           ++E   G  R +  A + GR   P ++    PPR+LH PG
Sbjct: 43  SDEEALGDHRPQLVAGLGGREHGPLELHLPAPPRDLHAPG 82



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>CP2DH_MACFA (Q29488) Cytochrome P450 2D17 (EC 1.14.14.1) (CYPIID17)|
          Length = 497

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 440 LATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 330
           +A   +LVDL+         + PG LPLPG G LL V
Sbjct: 13  VAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49



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>CP2D6_HUMAN (P10635) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6) (P450-DB1)|
           (Debrisoquine 4-hydroxylase)
          Length = 497

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 440 LATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 330
           +A   +LVDL+         + PG LPLPG G LL V
Sbjct: 13  VAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,062,715
Number of Sequences: 219361
Number of extensions: 660460
Number of successful extensions: 2239
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2236
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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