ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl07b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predic... 391 e-105
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 391 e-105
3dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic D... 391 e-105
4dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic D... 391 e-105
5gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome... 295 5e-77
6gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome... 295 5e-77
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 295 5e-77
8dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 295 5e-77
9dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 295 5e-77
10dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 295 5e-77
11dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clon... 295 5e-77
12gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 295 5e-77
13ref|XM_956946.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.33
14ref|XM_330944.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.33
15emb|X80052.1|NCFOX2 N.crassa fox-2 gene 44 0.33
16gb|AE005990.1| Caulobacter crescentus CB15 section 316 of 359 of... 42 1.3
17dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.3
18gb|AE015451.1| Pseudomonas putida KT2440 complete genome 42 1.3
19gb|BC072525.1| Rattus norvegicus paralemmin, mRNA (cDNA clone MG... 40 5.1
20gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 5.1
21ref|NM_130829.1| Rattus norvegicus paralemmin (Palm), mRNA 40 5.1
22gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.1
23dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 5.1
24dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 40 5.1
25gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 5.1
26gb|AC131405.5| Rattus norvegicus BAC CH230-179I7 (Children's Ho... 40 5.1
27dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.1
28gb|DQ184948.1| Malus x domestica putative receptor kinase (DIPM1... 40 5.1
29gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 5.1
30gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 5.1
31dbj|AB058889.1| Rattus norvegicus mRNA for paralemmin, complete cds 40 5.1

>ref|XM_462832.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3111

 Score =  391 bits (197), Expect = e-105
 Identities = 254/273 (93%)
 Strand = Plus / Plus

                                                                       
Query: 108 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 167
           |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 246 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 305

                                                                       
Query: 168 cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 227
           |||||||||   |||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 306 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 365

                                                                       
Query: 228 ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 287
            |||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||
Sbjct: 366 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 425

                                                                       
Query: 288 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 347
           ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct: 426 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 485

                                            
Query: 348 ctacctcgagatcattgacaagcgcgatgccgc 380
           ||||||||||||||| ||||||||||| |||||
Sbjct: 486 ctacctcgagatcatcgacaagcgcgacgccgc 518



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  391 bits (197), Expect = e-105
 Identities = 254/273 (93%)
 Strand = Plus / Minus

                                                                            
Query: 108      cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 167
                |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 10025978 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 10025919

                                                                            
Query: 168      cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 227
                |||||||||   |||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 10025918 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 10025859

                                                                            
Query: 228      ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 287
                 |||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||
Sbjct: 10025858 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 10025799

                                                                            
Query: 288      caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 347
                ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct: 10025798 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 10025739

                                                 
Query: 348      ctacctcgagatcattgacaagcgcgatgccgc 380
                ||||||||||||||| ||||||||||| |||||
Sbjct: 10025738 ctacctcgagatcatcgacaagcgcgacgccgc 10025706



to top

>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1085F09
          Length = 132713

 Score =  391 bits (197), Expect = e-105
 Identities = 254/273 (93%)
 Strand = Plus / Minus

                                                                          
Query: 108    cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 167
              |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 106260 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 106201

                                                                          
Query: 168    cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 227
              |||||||||   |||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 106200 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 106141

                                                                          
Query: 228    ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 287
               |||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||
Sbjct: 106140 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 106081

                                                                          
Query: 288    caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 347
              ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct: 106080 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 106021

                                               
Query: 348    ctacctcgagatcattgacaagcgcgatgccgc 380
              ||||||||||||||| ||||||||||| |||||
Sbjct: 106020 ctacctcgagatcatcgacaagcgcgacgccgc 105988



to top

>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0036E02
          Length = 145931

 Score =  391 bits (197), Expect = e-105
 Identities = 254/273 (93%)
 Strand = Plus / Minus

                                                                          
Query: 108    cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 167
              |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 120471 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 120412

                                                                          
Query: 168    cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 227
              |||||||||   |||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 120411 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 120352

                                                                          
Query: 228    ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 287
               |||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||
Sbjct: 120351 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 120292

                                                                          
Query: 288    caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 347
              ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct: 120291 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 120232

                                               
Query: 348    ctacctcgagatcattgacaagcgcgatgccgc 380
              ||||||||||||||| ||||||||||| |||||
Sbjct: 120231 ctacctcgagatcatcgacaagcgcgacgccgc 120199



to top

>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0063D09 map S1559, complete sequence
          Length = 190721

 Score =  295 bits (149), Expect = 5e-77
 Identities = 230/257 (89%)
 Strand = Plus / Minus

                                                                         
Query: 118   gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 177
             |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 21432 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 21373

                                                                         
Query: 178   aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 237
             || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 21372 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 21313

                                                                         
Query: 238   cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 297
             |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 21312 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 21253

                                                                         
Query: 298   cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 357
             ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 21252 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 21193

                              
Query: 358   atcattgacaagcgcga 374
             ||| | |||||||||||
Sbjct: 21192 atcgtcgacaagcgcga 21176



to top

>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24
              map S20116S, complete sequence
          Length = 174210

 Score =  295 bits (149), Expect = 5e-77
 Identities = 230/257 (89%)
 Strand = Plus / Minus

                                                                          
Query: 118    gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 177
              |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 170897 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170838

                                                                          
Query: 178    aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 237
              || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 170837 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 170778

                                                                          
Query: 238    cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 297
              |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 170777 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 170718

                                                                          
Query: 298    cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 357
              ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 170717 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 170658

                               
Query: 358    atcattgacaagcgcga 374
              ||| | |||||||||||
Sbjct: 170657 atcgtcgacaagcgcga 170641



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  295 bits (149), Expect = 5e-77
 Identities = 230/257 (89%)
 Strand = Plus / Minus

                                                                           
Query: 118     gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 177
               |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 3653760 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3653701

                                                                           
Query: 178     aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 237
               || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 3653700 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 3653641

                                                                           
Query: 238     cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 297
               |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 3653640 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 3653581

                                                                           
Query: 298     cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 357
               ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 3653580 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 3653521

                                
Query: 358     atcattgacaagcgcga 374
               ||| | |||||||||||
Sbjct: 3653520 atcgtcgacaagcgcga 3653504



to top

>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full
           insert sequence
          Length = 3332

 Score =  295 bits (149), Expect = 5e-77
 Identities = 230/257 (89%)
 Strand = Plus / Plus

                                                                       
Query: 118 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 177
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170

                                                                       
Query: 178 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 237
           || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 171 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 230

                                                                       
Query: 238 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 297
           |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 231 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 290

                                                                       
Query: 298 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 357
           ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 291 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 350

                            
Query: 358 atcattgacaagcgcga 374
           ||| | |||||||||||
Sbjct: 351 atcgtcgacaagcgcga 367



to top

>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full
           insert sequence
          Length = 3332

 Score =  295 bits (149), Expect = 5e-77
 Identities = 230/257 (89%)
 Strand = Plus / Plus

                                                                       
Query: 118 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 177
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170

                                                                       
Query: 178 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 237
           || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 171 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 230

                                                                       
Query: 238 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 297
           |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 231 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 290

                                                                       
Query: 298 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 357
           ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 291 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 350

                            
Query: 358 atcattgacaagcgcga 374
           ||| | |||||||||||
Sbjct: 351 atcgtcgacaagcgcga 367



to top

>dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136B14, full
           insert sequence
          Length = 1667

 Score =  295 bits (149), Expect = 5e-77
 Identities = 230/257 (89%)
 Strand = Plus / Plus

                                                                       
Query: 118 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 177
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 75  gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 134

                                                                       
Query: 178 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 237
           || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 135 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 194

                                                                       
Query: 238 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 297
           |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 195 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 254

                                                                       
Query: 298 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 357
           ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 255 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 314

                            
Query: 358 atcattgacaagcgcga 374
           ||| | |||||||||||
Sbjct: 315 atcgtcgacaagcgcga 331



to top

>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full
           insert sequence
          Length = 3363

 Score =  295 bits (149), Expect = 5e-77
 Identities = 230/257 (89%)
 Strand = Plus / Plus

                                                                       
Query: 118 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 177
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 142 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 201

                                                                       
Query: 178 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 237
           || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 202 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 261

                                                                       
Query: 238 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 297
           |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 262 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 321

                                                                       
Query: 298 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 357
           ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 322 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 381

                            
Query: 358 atcattgacaagcgcga 374
           ||| | |||||||||||
Sbjct: 382 atcgtcgacaagcgcga 398



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  295 bits (149), Expect = 5e-77
 Identities = 230/257 (89%)
 Strand = Plus / Minus

                                                                           
Query: 118     gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 177
               |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 3662454 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3662395

                                                                           
Query: 178     aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 237
               || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 3662394 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 3662335

                                                                           
Query: 238     cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 297
               |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 3662334 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 3662275

                                                                           
Query: 298     cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 357
               ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 3662274 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 3662215

                                
Query: 358     atcattgacaagcgcga 374
               ||| | |||||||||||
Sbjct: 3662214 atcgtcgacaagcgcga 3662198



to top

>ref|XM_956946.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial
            mRNA
          Length = 2685

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 152  tcgacaagggctccgccgccat 173
            ||||||||||||||||||||||
Sbjct: 2162 tcgacaagggctccgccgccat 2183



to top

>ref|XM_330944.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial
            mRNA
          Length = 2685

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 152  tcgacaagggctccgccgccat 173
            ||||||||||||||||||||||
Sbjct: 2162 tcgacaagggctccgccgccat 2183



to top

>emb|X80052.1|NCFOX2 N.crassa fox-2 gene
          Length = 3401

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 152  tcgacaagggctccgccgccat 173
            ||||||||||||||||||||||
Sbjct: 2665 tcgacaagggctccgccgccat 2686



to top

>gb|AE005990.1| Caulobacter crescentus CB15 section 316 of 359 of the complete
           genome
          Length = 10324

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 191 cggatctggagggcagcgacgtcgccgcc 219
           |||||||| ||||| ||||||||||||||
Sbjct: 542 cggatctgcagggcggcgacgtcgccgcc 514



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 196 ctggagggcagcgacgtcgccgcc 219
           ||||||||| ||||||||||||||
Sbjct: 508 ctggagggcggcgacgtcgccgcc 531



to top

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 252     cctcctcaatggcgagaccctgccg 276
               |||||||||||||||||| ||||||
Sbjct: 7448022 cctcctcaatggcgagactctgccg 7448046



to top

>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 212     tcgccgccaaggtcgaggcca 232
               |||||||||||||||||||||
Sbjct: 4038174 tcgccgccaaggtcgaggcca 4038194



to top

>gb|BC072525.1| Rattus norvegicus paralemmin, mRNA (cDNA clone MGC:91516
           IMAGE:7097177), complete cds
          Length = 2635

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 317 aggaccacaccatccagaag 336
           ||||||||||||||||||||
Sbjct: 886 aggaccacaccatccagaag 905



to top

>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 214     gccgccaaggtcgaggccat 233
               ||||||||||||||||||||
Sbjct: 2893165 gccgccaaggtcgaggccat 2893146



to top

>ref|NM_130829.1| Rattus norvegicus paralemmin (Palm), mRNA
          Length = 2571

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 317 aggaccacaccatccagaag 336
           ||||||||||||||||||||
Sbjct: 845 aggaccacaccatccagaag 864



to top

>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     cgccgtcgccctccggcgcg 98
              ||||||||||||||||||||
Sbjct: 612231 cgccgtcgccctccggcgcg 612250



to top

>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 218     ccaaggtcgaggccatgaag 237
               ||||||||||||||||||||
Sbjct: 1720007 ccaaggtcgaggccatgaag 1720026



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    ccaaggtcgaggccatgaag 237
              ||||||||||||||||||||
Sbjct: 728522 ccaaggtcgaggccatgaag 728541



to top

>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 254     tcctcaatggcgagaccctg 273
               ||||||||||||||||||||
Sbjct: 4156014 tcctcaatggcgagaccctg 4156033



to top

>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 183     gatcaaggcggatctggagg 202
               ||||||||||||||||||||
Sbjct: 1763887 gatcaaggcggatctggagg 1763868



to top

>gb|AC131405.5| Rattus norvegicus  BAC CH230-179I7 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 217197

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 317    aggaccacaccatccagaag 336
              ||||||||||||||||||||
Sbjct: 142948 aggaccacaccatccagaag 142929



to top

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 210     cgtcgccgccaaggtcgagg 229
               ||||||||||||||||||||
Sbjct: 4994308 cgtcgccgccaaggtcgagg 4994327



to top

>gb|DQ184948.1| Malus x domestica putative receptor kinase (DIPM1) mRNA, complete
           cds
          Length = 2440

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 cgtcgtccgctacgtcctcc 310
           ||||||||||||||||||||
Sbjct: 265 cgtcgtccgctacgtcctcc 284



to top

>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    ccaaggtcgaggccatgaag 237
              ||||||||||||||||||||
Sbjct: 759001 ccaaggtcgaggccatgaag 759020



to top

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     gcgacgtcgccgccaaggtc 225
               ||||||||||||||||||||
Sbjct: 1266036 gcgacgtcgccgccaaggtc 1266017



to top

>dbj|AB058889.1| Rattus norvegicus mRNA for paralemmin, complete cds
          Length = 2571

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 317 aggaccacaccatccagaag 336
           ||||||||||||||||||||
Sbjct: 845 aggaccacaccatccagaag 864


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,122,420
Number of Sequences: 3902068
Number of extensions: 2122420
Number of successful extensions: 40699
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39896
Number of HSP's gapped (non-prelim): 795
length of query: 385
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 363
effective length of database: 17,147,199,772
effective search space: 6224433517236
effective search space used: 6224433517236
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top