ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl07b07 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 125 bits (314), Expect = 6e-29 Identities = 61/123 (49%), Positives = 86/123 (69%), Gaps = 1/123 (0%) Frame = +1 Query: 115 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 291 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 292 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHPNEYIRGVTLR 471 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C R +LQHPNE+IRG TLR Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLR 122 Query: 472 FLC 480 FLC Sbjct: 123 FLC 125
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 125 bits (314), Expect = 6e-29 Identities = 61/123 (49%), Positives = 86/123 (69%), Gaps = 1/123 (0%) Frame = +1 Query: 115 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 291 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 292 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHPNEYIRGVTLR 471 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C R +LQHPNE+IRG TLR Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLR 122 Query: 472 FLC 480 FLC Sbjct: 123 FLC 125
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 125 bits (314), Expect = 6e-29 Identities = 61/123 (49%), Positives = 86/123 (69%), Gaps = 1/123 (0%) Frame = +1 Query: 115 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 291 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 292 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHPNEYIRGVTLR 471 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C R +LQHPNE+IRG TLR Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLR 122 Query: 472 FLC 480 FLC Sbjct: 123 FLC 125
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 124 bits (312), Expect = 1e-28 Identities = 57/118 (48%), Positives = 81/118 (68%) Frame = +1 Query: 127 PCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVL 306 PC +++ ++K DLE D K+E +KR + LLLNGE P L +T++R+VL Sbjct: 6 PCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVL 65 Query: 307 PSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLC 480 P ++HTI+KLLL++ EI+ K A G++L EMIL+C R +LQHPNE++RG TLRFLC Sbjct: 66 PVQNHTIKKLLLIFWEIVPKTSADGKLLQEMILVCDAYRKDLQHPNEFLRGSTLRFLC 123
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 104 bits (260), Expect = 1e-22 Identities = 50/117 (42%), Positives = 75/117 (64%) Frame = +1 Query: 130 CTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLP 309 C LV D A + +K LE + K+ AMK + +++NG++LP++ + V+R+V+P Sbjct: 3 CWTLVQQDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVMP 62 Query: 310 SEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLC 480 S + ++KLL Y E+ K + G + EMIL C + RN+LQHPNE+IRG TLRFLC Sbjct: 63 SRNKELKKLLYYYWEVCPKYNNDGTMKQEMILACNSFRNDLQHPNEFIRGATLRFLC 119
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 90.1 bits (222), Expect = 3e-18 Identities = 44/98 (44%), Positives = 68/98 (69%) Frame = +1 Query: 184 KADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIID 363 KA +GSD K++ MK ++ +L G +P L + ++R+V+PS++ ++KLL Y EI+ Sbjct: 30 KALEKGSD-EQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVP 88 Query: 364 KRDAAGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFL 477 K G++ EMIL+C ++++LQHPNEYIRG TLRFL Sbjct: 89 KLAEDGKLRHEMILVCNAIQHDLQHPNEYIRGNTLRFL 126
>SYL_XANAC (Q8PIW4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 880 Score = 31.2 bits (69), Expect = 1.5 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = -2 Query: 264 LAIEEEHDGAFHGLDLGGDVAALQIRLDLIRHGGGALVEVD*QRARLVHGAGSAVHP 94 ++I EH A H ++AAL L+ ++HGG + E++ Q R + +AVHP Sbjct: 267 VSIAAEHPLALHAAKSNPELAAL---LETLKHGGVSEAELETQEKRGMATGLTAVHP 320
>MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Multiple drug| resistance protein homolog) (P-glycoprotein) Length = 1336 Score = 31.2 bits (69), Expect = 1.5 Identities = 21/77 (27%), Positives = 40/77 (51%) Frame = +1 Query: 88 PARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGET 267 P +H +SG + P + FD S A + + L ++V+ +EA ++ ++ ++G Sbjct: 1082 PGNLH-KSGYLKFPLVGKIEFDGVSFAYPDSERNHLALNNVSLSIEAREKVAIVGISGSG 1140 Query: 268 LPTLFITVVRYVLPSED 318 TL + ++R PSED Sbjct: 1141 KSTL-VELLRKTYPSED 1156
>DNAE2_SYMTH (Q67N73) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1085 Score = 30.4 bits (67), Expect = 2.5 Identities = 22/69 (31%), Positives = 36/69 (52%) Frame = -2 Query: 216 GGDVAALQIRLDLIRHGGGALVEVD*QRARLVHGAGSAVHPRRRATACGVSVVGSAAEVD 37 GG+ +L DL+R GGA+ + A ++ GA +H RRA V+ + A + Sbjct: 860 GGEFRSLA---DLVRRTGGAVPRGPLE-ALVLAGAFDRLHSNRRAALWQVAHLLEAERIR 915 Query: 36 RDLGAGRGG 10 ++ GAG+ G Sbjct: 916 QERGAGQAG 924
>VATH_MANSE (Q9U5N0) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 475 Score = 30.0 bits (66), Expect = 3.3 Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 3/77 (3%) Frame = +1 Query: 256 NGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMIL---ICQNLRN 426 N + +F+ ++ ++ S+DHTIQ +L+L +I+ + + ++ E I Q N Sbjct: 76 NPDACADVFLNLLTHI--SKDHTIQYILVLIDDILSEDKSRVKIFRETKYSGNIWQPFLN 133 Query: 427 NLQHPNEYIRGVTLRFL 477 L +E+++ +T R + Sbjct: 134 LLNRQDEFVQHMTARII 150
>RSNL2_MOUSE (Q8CI96) Restin-like protein 2| Length = 704 Score = 29.6 bits (65), Expect = 4.3 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 5/83 (6%) Frame = +1 Query: 151 DKG---SAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 321 DKG + + + + LE +D AA + +K+ +LL+ LP T + VLP+ DH Sbjct: 218 DKGQIPAEVVPDPVDMPLEMADAAAIAKEIKQ---MLLDAVPLPC---TSAKAVLPNSDH 271 Query: 322 TIQKLLL--LYLEIIDKRDAAGR 384 T + +L L L++ D+ AG+ Sbjct: 272 TTSRAMLTSLGLKLGDRVVIAGQ 294
>DAB1_MACFA (Q9BGX5) Disabled homolog 1| Length = 555 Score = 29.3 bits (64), Expect = 5.6 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 6/27 (22%) Frame = +2 Query: 5 HSPPLPAPRSRSTS------AADPTTD 67 +SPP PAPR S S A+DPTTD Sbjct: 480 NSPPTPAPRQSSPSKSSASHASDPTTD 506
>DAB1_HUMAN (O75553) Disabled homolog 1| Length = 555 Score = 29.3 bits (64), Expect = 5.6 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 6/27 (22%) Frame = +2 Query: 5 HSPPLPAPRSRSTS------AADPTTD 67 +SPP PAPR S S A+DPTTD Sbjct: 480 NSPPTPAPRQSSPSKSSASHASDPTTD 506
>FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein 2 precursor| (ECM3 homolog) (NV domain-containing protein 1) Length = 3160 Score = 28.9 bits (63), Expect = 7.3 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +1 Query: 247 LLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILI 408 L L+ T L + + Y PSED ++L L LEI+D AA M+++ Sbjct: 371 LPLSSFTQRDLRLLKIAYQPPSEDSDQERLFELELEIVDPEGAASDPFAFMVVV 424
>GR43A_DROME (Q9V4K2) Putative gustatory receptor 43a| Length = 427 Score = 28.9 bits (63), Expect = 7.3 Identities = 20/63 (31%), Positives = 32/63 (50%) Frame = +1 Query: 223 EAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMI 402 E++ + V LL N + LFI V + H + L+LE++ KRD G + +M+ Sbjct: 279 ESLGKCVHLLSNSFGIAVLFILVSCLL-----HLVATAYFLFLELLSKRD-NGYLWVQML 332 Query: 403 LIC 411 IC Sbjct: 333 WIC 335
>ISPG_AQUAE (O67496) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 357 Score = 28.5 bits (62), Expect = 9.6 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -2 Query: 75 CGVSVVGSAAEVDRDLGAGRGGEWL 1 C V+ +G A E D L GRG WL Sbjct: 300 CVVNAIGEAREADIGLACGRGFAWL 324
>ANPRC_MOUSE (P70180) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) (EF-2) Length = 536 Score = 28.5 bits (62), Expect = 9.6 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +1 Query: 190 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 321 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279
>POTE8_HUMAN (Q6S8J7) Prostate, ovary, testis expressed protein on chromosome 8| Length = 498 Score = 28.5 bits (62), Expect = 9.6 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Frame = +1 Query: 118 MDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGE--TLPTLF-IT 288 +D+ C L V K A+ ++ + + A+MLL +G LP ++ T Sbjct: 119 LDRQCQLHVFDSKKRTALIKAVQCQED-----------ECALMLLQHGTDPNLPDMYGNT 167 Query: 289 VVRYVLPSEDHTIQKLLLLYLEIIDKRDAAG 381 + Y + +ED + K LLLY I+ ++ G Sbjct: 168 ALHYAVYNEDKLMAKTLLLYGADIESKNKGG 198
>ANPRC_RAT (P41740) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) Length = 535 Score = 28.5 bits (62), Expect = 9.6 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +1 Query: 190 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 321 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,529,584 Number of Sequences: 219361 Number of extensions: 1004870 Number of successful extensions: 4163 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3989 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4160 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
