ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl07b03 |
|---|---|
| Clone Library Name | barley_pub |
>R13L3_ARATH (Q9STE7) Putative disease resistance RPP13-like protein 3| Length = 847 Score = 50.4 bits (119), Expect = 2e-06 Identities = 28/75 (37%), Positives = 41/75 (54%) Frame = +1 Query: 136 GSVLGKLGVMLSNEYKLLKGVRDDIQFLKDELEAMHKFLVTMANVEEPHEQDKLRADAVR 315 G VL K+G L NE L GV+DD++ LK EL +H +L + E E K V Sbjct: 7 GFVLNKIGGYLINEVLALMGVKDDLEELKTELTCIHGYLKDVEAREREDEVSKEWTKLVL 66 Query: 316 DLSYVMEDKIDKFMV 360 D++Y +ED +D + + Sbjct: 67 DIAYDIEDVLDTYFL 81
>R13L2_ARATH (Q9STE5) Putative disease resistance RPP13-like protein 2| Length = 847 Score = 42.7 bits (99), Expect = 4e-04 Identities = 23/77 (29%), Positives = 42/77 (54%) Frame = +1 Query: 142 VLGKLGVMLSNEYKLLKGVRDDIQFLKDELEAMHKFLVTMANVEEPHEQDKLRADAVRDL 321 V+GK+ L E +L GV+DD++ LK EL + +L + ++ E K V D+ Sbjct: 9 VVGKIDNYLIEEAPMLIGVKDDLEELKTELTCIQVYLKNVEVCDKEDEVSKEWTKLVLDI 68 Query: 322 SYVMEDKIDKFMVLVRR 372 +Y +ED +D + + + + Sbjct: 69 AYDVEDVLDTYFLKLEK 85
>DRL4_ARATH (Q9SX38) Putative disease resistance protein At1g50180| Length = 839 Score = 39.3 bits (90), Expect = 0.005 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Frame = +1 Query: 151 KLGVMLSNEYKLLKGVRDDIQFLKDELEAMHKFLVTMANVEEPHEQDKLR--ADAVRDLS 324 KLG +L E L G+ D ++ L+DEL+ ++ FL E+ HE +++R +R+ S Sbjct: 12 KLGQLLLEEPLFLFGIGDQVKQLQDELKRLNCFLKDAD--EKQHESERVRNWVAGIREAS 69 Query: 325 YVMEDKIDKFMV 360 Y ED ++ F + Sbjct: 70 YDAEDILEAFFL 81
>RX24L_ARATH (Q9C646) Probable disease resistance protein RXW24L| Length = 899 Score = 37.0 bits (84), Expect = 0.023 Identities = 22/70 (31%), Positives = 33/70 (47%) Frame = +1 Query: 151 KLGVMLSNEYKLLKGVRDDIQFLKDELEAMHKFLVTMANVEEPHEQDKLRADAVRDLSYV 330 KL LS EY KGV D + LK L + FL + E + + ++D+ Y Sbjct: 10 KLWDRLSQEYDQFKGVEDQVTELKSNLNLLKSFLKDADAKKHISEMVRHCVEEIKDIVYD 69 Query: 331 MEDKIDKFMV 360 ED I+ F++ Sbjct: 70 TEDIIETFIL 79
>DRL13_ARATH (Q9XIF0) Putative disease resistance protein At1g59780| Length = 906 Score = 36.2 bits (82), Expect = 0.039 Identities = 19/70 (27%), Positives = 39/70 (55%) Frame = +1 Query: 151 KLGVMLSNEYKLLKGVRDDIQFLKDELEAMHKFLVTMANVEEPHEQDKLRADAVRDLSYV 330 KL +LS EY+ +GV + I L+D+L+ + FL ++ + + +++++Y Sbjct: 17 KLWKLLSQEYERFQGVEEQITELRDDLKMLMAFLSDADAKKQTRALARNCLEEIKEITYD 76 Query: 331 MEDKIDKFMV 360 ED I+ F++ Sbjct: 77 AEDIIEIFLL 86
>RPM1_ARATH (Q39214) Disease resistance protein RPM1 (Resistance to Pseudomonas| syringae protein 3) Length = 926 Score = 33.5 bits (75), Expect = 0.26 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 12/82 (14%) Frame = +1 Query: 145 LGKLGVMLSNEYKLLKGVRDDIQFLKDELEAMHKFLVTMANVEEPHEQDKLRADAV---- 312 +G++ +L NE LL GV +I +K EL M FL E+ H+ + Sbjct: 10 IGRILSVLENETLLLSGVHGEIDKMKKELLIMKSFL------EDTHKHGGNGSTTTTTQL 63 Query: 313 --------RDLSYVMEDKIDKF 354 RDL+Y +ED +D+F Sbjct: 64 FQTFVANTRDLAYQIEDILDEF 85
>ZN575_HUMAN (Q86XF7) Zinc finger protein 575| Length = 245 Score = 32.7 bits (73), Expect = 0.44 Identities = 36/137 (26%), Positives = 46/137 (33%), Gaps = 6/137 (4%) Frame = -1 Query: 403 P*SYLAWNLAHGGRAP*TCRFCPP*HTTGPAQRRHEACLAHEVPPHSPS*RGICAWLPAR 224 P A L H G P C CP H + LA + H+P+ C P Sbjct: 103 PSKLAAHRLTHSGARPHPCPHCPK-------SFGHRSKLAAHLWTHAPTRPYPCPDCP-- 153 Query: 223 P*ETGCHHEHP*AACIHCST*HPTSPRRNPWPRWLRSQKIPQPLVAAHSNFSPATA---- 56 ++ C+ P H T H T R P P ++ P L A P TA Sbjct: 154 --KSFCY---PSKLAAHRHTHHATDARPYPCPHCPKAFSFPSKLAAHRLCHDPPTAPGSQ 208 Query: 55 --AWVWCGGWKEGRGGR 11 AW C + G R Sbjct: 209 ATAWHRCSSCGQAFGQR 225
>ZN575_MOUSE (Q3TXZ1) Zinc finger protein 575| Length = 239 Score = 31.2 bits (69), Expect = 1.3 Identities = 31/116 (26%), Positives = 41/116 (35%) Frame = -1 Query: 403 P*SYLAWNLAHGGRAP*TCRFCPP*HTTGPAQRRHEACLAHEVPPHSPS*RGICAWLPAR 224 P A L H G P +C C P H + LA + H+P+ C P Sbjct: 97 PSKLAAHRLTHSGARPHSCPHC-------PKAFGHRSKLAAHLWTHAPARPYPCPDCP-- 147 Query: 223 P*ETGCHHEHP*AACIHCST*HPTSPRRNPWPRWLRSQKIPQPLVAAHSNFSPATA 56 ++ C +P H T H T R P P ++ P L A P TA Sbjct: 148 --KSFC---YPSKLAAHRHTHHATDARPYPCPHCPKAFSFPSKLAAHRLCHDPPTA 198
>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor| Length = 374 Score = 30.8 bits (68), Expect = 1.7 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%) Frame = +2 Query: 176 NTSCSRVFVMTSSFSRTSWKPCTNSSSRWRMWRNLMSKTSFVPTLCGTCRMLWRTKSTSS 355 ++S S V +S + +S ++SSS S +SF+ T+ + + T + SS Sbjct: 200 SSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSS 259 Query: 356 WCSSAVSQVPSQIASWSF-AEKAWRRSTKSSSAI 454 SS S+VPS A+ + A KA ++ ++ AI Sbjct: 260 SSSSTSSEVPSSTAALALNASKASNHTSLNAGAI 293
>TERT_HUMAN (O14746) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase| catalytic subunit) (HEST2) (Telomerase-associated protein 2) (TP2) Length = 1132 Score = 30.8 bits (68), Expect = 1.7 Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 9/61 (14%) Frame = -1 Query: 286 AHEVPPHSPS*RGICAWLPARP*E---------TGCHHEHP*AACIHCST*HPTSPRRNP 134 AH PS RG C PARP E +G H HP H + TS P Sbjct: 257 AHPGRTRGPSDRGFCVVSPARPAEEATSLEGALSGTRHSHPSVGRQHHAGPPSTSRPPRP 316 Query: 133 W 131 W Sbjct: 317 W 317
>ZN575_MACFA (Q9GM03) Zinc finger protein 575| Length = 260 Score = 30.4 bits (67), Expect = 2.2 Identities = 31/116 (26%), Positives = 40/116 (34%) Frame = -1 Query: 403 P*SYLAWNLAHGGRAP*TCRFCPP*HTTGPAQRRHEACLAHEVPPHSPS*RGICAWLPAR 224 P A L H G P C C P H + LA + H+P+ C P Sbjct: 118 PSKLAAHRLTHSGARPHPCPHC-------PKAFGHRSKLAAHLWTHAPTRPYPCPDCP-- 168 Query: 223 P*ETGCHHEHP*AACIHCST*HPTSPRRNPWPRWLRSQKIPQPLVAAHSNFSPATA 56 ++ C +P H T H T R P P ++ P L A P TA Sbjct: 169 --KSFC---YPSKLAAHRHTHHATDARPYPCPHCPKAFSFPSKLAAHRLCHDPPTA 219
>Y1632_AQUAE (O67554) Hypothetical UPF0069 protein aq_1632| Length = 374 Score = 30.0 bits (66), Expect = 2.8 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +1 Query: 151 KLGVMLSNEYKLLKGVRDDIQFLKDELEAM 240 K G L+N+ +LKG+ DD + LK LE + Sbjct: 231 KTGTTLTNQTPILKGINDDFETLKTLLEEL 260
>RAD50_PYRAB (Q9UZC8) DNA double-strand break repair rad50 ATPase| Length = 880 Score = 30.0 bits (66), Expect = 2.8 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Frame = +1 Query: 175 EYKLLKGVRDD----IQFLKDELEAMHKFLVTMANVEEPHEQDKLRADAVRDLSYVMEDK 342 EY+ LKG RD+ ++ L+ EL L + V + E+ K RA+ +R+ +E + Sbjct: 298 EYRKLKGFRDEYESKLRRLEKELSKWESELKAIEEVIKEGEKKKERAEEIREKLSEIEKR 357 Query: 343 IDKFMVLVRREPSSK 387 +++ V +K Sbjct: 358 LEELKPYVEELEDAK 372
>SPB1_YARLI (Q6C9Q1) AdoMet-dependent rRNA methyltransferase SPB1 (EC 2.1.1.-)| (2'-O-ribose RNA methyltransferase) (S-adenosyl-L-methionine-dependent methyltransferase) Length = 850 Score = 29.6 bits (65), Expect = 3.7 Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 3/63 (4%) Frame = +1 Query: 271 EEPHEQDKLRADAVRDLSYVMEDKI---DKFMVLVRREPSSKPDSFMELCRKSMEKINKI 441 EE E+DK D ++ YV++DK+ + + +V + P + P+ + C K ++ + + Sbjct: 293 EEEKEKDKEARDERGNVQYVLDDKVYSDEDALKMVSKLPQTTPE--LLECLKDLKVLGRK 350 Query: 442 KFR 450 +FR Sbjct: 351 EFR 353
>RR3_MESVI (Q9MUU2) Chloroplast 30S ribosomal protein S3| Length = 213 Score = 29.6 bits (65), Expect = 3.7 Identities = 18/67 (26%), Positives = 33/67 (49%) Frame = +1 Query: 97 AEEFFVSAATGAMGSVLGKLGVMLSNEYKLLKGVRDDIQFLKDELEAMHKFLVTMANVEE 276 A++ + T G V+G+ G KG+ + I+ L+D+L KF +T+ ++E Sbjct: 61 ADQVEIEIYTARPGLVVGRTG----------KGIENLIRDLQDKLRNKRKFRITITYLQE 110 Query: 277 PHEQDKL 297 P + L Sbjct: 111 PDLESTL 117
>KTN1_VULVU (O97961) Kinectin| Length = 1330 Score = 29.3 bits (64), Expect = 4.8 Identities = 14/41 (34%), Positives = 25/41 (60%) Frame = +1 Query: 166 LSNEYKLLKGVRDDIQFLKDELEAMHKFLVTMANVEEPHEQ 288 LS++ KLL+ V+D+ + K E+E + + A+ PHE+ Sbjct: 956 LSSKIKLLQEVQDENKLFKSEIEQLKQCNYQQASSFPPHEE 996
>ZN563_HUMAN (Q8TA94) Zinc finger protein 563| Length = 476 Score = 28.9 bits (63), Expect = 6.3 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = -1 Query: 397 SYLAWNLAHGGRAP*TCRFCPP*HTTGPAQRRHEACLAHEVP 272 SY+ H G P TC+ C + + RRHE + E P Sbjct: 267 SYIRHERTHTGEKPYTCKQCGKAFSVSSSLRRHETTHSAEKP 308
>GYRA_BACSU (P05653) DNA gyrase subunit A (EC 5.99.1.3)| Length = 821 Score = 28.9 bits (63), Expect = 6.3 Identities = 11/57 (19%), Positives = 33/57 (57%) Frame = +1 Query: 142 VLGKLGVMLSNEYKLLKGVRDDIQFLKDELEAMHKFLVTMANVEEPHEQDKLRADAV 312 ++ +L +L+NEYK+L+ +R+++ +K+ + + + +E ++D + + + Sbjct: 450 LIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLIERENI 506
>LMNA_PIG (Q3ZD69) Lamin-A/C| Length = 664 Score = 28.9 bits (63), Expect = 6.3 Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 16/135 (11%) Frame = +1 Query: 73 SLSEQRLMAEEFF-VSAATGAMGSVLGKLGVMLSNEYKLLKGVRDDIQFLKDELEAMHKF 249 +LSE+R + E + + + LG+ L +E + +Q LK+EL+ Sbjct: 151 ALSEKRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRVDAENRLQTLKEELDFQKNI 210 Query: 250 ---------------LVTMANVEEPHEQDKLRADAVRDLSYVMEDKIDKFMVLVRREPSS 384 LV + N ++ + +L ADA++DL ED+++++ + + S+ Sbjct: 211 YSEELRETKRRHETRLVEIDNGKQREFESRL-ADALQDLRAQHEDQVEQYKKELEKTYSA 269 Query: 385 KPDSFMELCRKSMEK 429 K D+ R+S E+ Sbjct: 270 KLDN----ARQSAER 280
>Y1033_SULSO (Q97Z97) Hypothetical protein SSO1033 precursor| Length = 725 Score = 28.9 bits (63), Expect = 6.3 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = -3 Query: 452 WRNLILLIFSMLFLQSSMKLSGLEL-GSRRTSTMNLSILSSITYDRSRTA 306 W LIL +FS+L LQ G+ L S + ++N S L+S+ Y S A Sbjct: 9 WAPLILFLFSLLLLQ------GISLHASSPSFSVNASYLASLPYANSHVA 52
>Y1575_FUSNN (Q8RIL3) UPF0213 protein FN1575| Length = 100 Score = 28.9 bits (63), Expect = 6.3 Identities = 15/46 (32%), Positives = 26/46 (56%) Frame = +1 Query: 313 RDLSYVMEDKIDKFMVLVRREPSSKPDSFMELCRKSMEKINKIKFR 450 R ++ +E +I K++ + SKPDSF+ K +E + KIK + Sbjct: 56 RSIACSLESEIKKYIKKKKENIISKPDSFI----KDIENVRKIKIK 97
>MAD1_YEAST (P40957) Spindle assembly checkpoint component MAD1 (Mitotic arrest| deficient protein 1) Length = 749 Score = 28.5 bits (62), Expect = 8.2 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 17/146 (11%) Frame = +1 Query: 58 LSPERSLS--EQRLMAEEF--FVSAATGAMGSVLGKLGVMLSNEYKLLKGVRDDIQFLKD 225 L ++SLS E RL+ E+ SA A+ L V S + K V +D+ L D Sbjct: 439 LEQQKSLSFEECRLLREQLDGLYSAQNNAL------LEVENSETHASNKNVNEDMNNLID 492 Query: 226 -----------ELEAMHKFLVTMAN-VEEPHEQDKLRADAVRDLSYVME-DKIDKFMVLV 366 EL+ ++ L++ +N VE ++ KL +D + L+Y +++ V V Sbjct: 493 TYKNKTEDLTNELKKLNDQLLSNSNDVETQRKKRKLTSDQI-GLNYSQRLNELQLENVSV 551 Query: 367 RREPSSKPDSFMELCRKSMEKINKIK 444 RE SK + ++L ++ +EK+ K+K Sbjct: 552 SRE-LSKAQTTIQLLQEKLEKLTKLK 576
>SMC4_SCHPO (P41004) Structural maintenance of chromosome 4 (Chromosome| segregation protein cut3) (Cell untimely torn protein 3) Length = 1324 Score = 28.5 bits (62), Expect = 8.2 Identities = 17/96 (17%), Positives = 46/96 (47%) Frame = +1 Query: 163 MLSNEYKLLKGVRDDIQFLKDELEAMHKFLVTMANVEEPHEQDKLRADAVRDLSYVMEDK 342 +++ E + + ++ D++ +++ E ++N+++ E + + + ++DK Sbjct: 866 LVAGEERRILQLKSDLKSIRNNNERKRNLQNKISNMDKEVEAININNEGLVTEIKTLQDK 925 Query: 343 IDKFMVLVRREPSSKPDSFMELCRKSMEKINKIKFR 450 I + + R SK D E + +K+NK+ F+ Sbjct: 926 IMEIGGIRYRIQKSKVDDLHEQLKFVKDKLNKMSFK 961
>MQO4_STAES (Q8CMY4) Probable malate:quinone oxidoreductase 4 (EC 1.1.99.16)| (Malate dehydrogenase [acceptor] 4) (MQO 4) Length = 499 Score = 28.5 bits (62), Expect = 8.2 Identities = 19/90 (21%), Positives = 47/90 (52%), Gaps = 5/90 (5%) Frame = +1 Query: 199 RDDIQFLKDELEAMHKFLVTMANVEEPHEQDKLRADAVRDLSYVMEDKIDKFMVLVRREP 378 +++++FLKD EAM +F + N+E + +++R + + +M+ + DK + + Sbjct: 122 KNNVKFLKDRYEAMKQFPM-FDNIEYTEDIEEMR----KWIPLMMKGREDKGYMAASKID 176 Query: 379 SSKPDSFMELCRKSMEKIN-----KIKFRH 453 ++ EL RK + + +++++H Sbjct: 177 EGTDVNYGELTRKMAQNLKNSPNVEVQYKH 206
>MQO4_STAEQ (Q5HL19) Probable malate:quinone oxidoreductase 4 (EC 1.1.99.16)| (Malate dehydrogenase [acceptor] 4) (MQO 4) Length = 499 Score = 28.5 bits (62), Expect = 8.2 Identities = 19/90 (21%), Positives = 47/90 (52%), Gaps = 5/90 (5%) Frame = +1 Query: 199 RDDIQFLKDELEAMHKFLVTMANVEEPHEQDKLRADAVRDLSYVMEDKIDKFMVLVRREP 378 +++++FLKD EAM +F + N+E + +++R + + +M+ + DK + + Sbjct: 122 KNNVKFLKDRYEAMKQFPM-FDNIEYTEDIEEMR----KWIPLMMKGREDKGYMAASKID 176 Query: 379 SSKPDSFMELCRKSMEKIN-----KIKFRH 453 ++ EL RK + + +++++H Sbjct: 177 EGTDVNYGELTRKMAQNLKNSPNVEVQYKH 206
>SLP2_DROME (P32031) Fork head domain transcription factor slp2 (Sloppy paired| locus protein 2) Length = 445 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/39 (35%), Positives = 16/39 (41%) Frame = -2 Query: 360 HHELVDFVLHNIRQVPHSVGTKLVLLMRFLHIRHRDEEF 244 HH L H+ Q PH VG L LM+ H F Sbjct: 24 HHPLPPTTHHSALQSPHPVGLNLTNLMKMARTPHLKSSF 62 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.132 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,656,037 Number of Sequences: 219361 Number of extensions: 1465871 Number of successful extensions: 5675 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 5440 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5668 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
