>AP1B1_MOUSE (O35643) AP-1 complex subunit beta-1 (Adapter-related protein|
           complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor
           protein complex AP-1 beta-1 subunit) (Golgi adaptor
           HA1/AP1 adaptin beta subunit) (Clathrin assembly protein
           complex 1 beta larg
          Length = 943

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/22 (81%), Positives = 20/22 (90%)
 Frame = +3

Query: 198 DSKYFSTTKKGEMPELKEELNS 263
           DSKYF+TTKKGE+ ELK ELNS
Sbjct: 3   DSKYFTTTKKGEIFELKAELNS 24

>AP1B1_RAT (P52303) AP-1 complex subunit beta-1 (Adapter-related protein|
           complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor
           protein complex AP-1 beta-1 subunit) (Golgi adaptor
           HA1/AP1 adaptin beta subunit) (Clathrin assembly protein
           complex 1 beta large
          Length = 949

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/22 (81%), Positives = 20/22 (90%)
 Frame = +3

Query: 198 DSKYFSTTKKGEMPELKEELNS 263
           DSKYF+TTKKGE+ ELK ELNS
Sbjct: 3   DSKYFTTTKKGEIFELKAELNS 24

>AP1B1_HUMAN (Q10567) AP-1 complex subunit beta-1 (Adapter-related protein|
           complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor
           protein complex AP-1 beta-1 subunit) (Golgi adaptor
           HA1/AP1 adaptin beta subunit) (Clathrin assembly protein
           complex 1 beta larg
          Length = 949

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/22 (81%), Positives = 20/22 (90%)
 Frame = +3

Query: 198 DSKYFSTTKKGEMPELKEELNS 263
           DSKYF+TTKKGE+ ELK ELNS
Sbjct: 3   DSKYFTTTKKGEIFELKAELNS 24

>AP2B1_RAT (P62944) AP-2 complex subunit beta-1 (Adapter-related protein|
           complex 2 beta-1 subunit) (Beta-adaptin) (Plasma
           membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin
           assembly protein complex 2 beta large chain) (AP105B)
          Length = 937

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +3

Query: 198 DSKYFSTTKKGEMPELKEELNSQ 266
           DSKYF+T KKGE+ ELK ELN++
Sbjct: 3   DSKYFTTNKKGEIFELKAELNNE 25

>AP2B1_MOUSE (Q9DBG3) AP-2 complex subunit beta-1 (Adapter-related protein|
           complex 2 beta-1 subunit) (Beta-adaptin) (Plasma
           membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin
           assembly protein complex 2 beta large chain) (AP105B)
          Length = 937

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +3

Query: 198 DSKYFSTTKKGEMPELKEELNSQ 266
           DSKYF+T KKGE+ ELK ELN++
Sbjct: 3   DSKYFTTNKKGEIFELKAELNNE 25

>AP2B1_HUMAN (P63010) AP-2 complex subunit beta-1 (Adapter-related protein|
           complex 2 beta-1 subunit) (Beta-adaptin) (Plasma
           membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin
           assembly protein complex 2 beta large chain) (AP105B)
          Length = 937

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +3

Query: 198 DSKYFSTTKKGEMPELKEELNSQ 266
           DSKYF+T KKGE+ ELK ELN++
Sbjct: 3   DSKYFTTNKKGEIFELKAELNNE 25

>ATIN_BHV1P (P30020) Alpha trans-inducing protein (Alpha-TIF)|
          Length = 504

 Score = 31.2 bits (69), Expect = 0.72
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 97  ARGGGRPACLRDGMGLDSARGSQAGVRAC 11
           ARGG  P+ +R G+GL  ARGS     AC
Sbjct: 439 ARGGPGPSPVRSGLGLSRARGSPGPGPAC 467

>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 184 SPRRAYLPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDG 59
           +PR  +  N  ++P  A  PG   GG R A G   P   R G
Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267

>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 184 SPRRAYLPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDG 59
           +PR  +  N  ++P  A  PG   GG R A G   P   R G
Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267

>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 184 SPRRAYLPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDG 59
           +PR  +  N  ++P  A  PG   GG R A G   P   R G
Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267

>KINH_STRPU (P35978) Kinesin heavy chain|
          Length = 1031

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 154  HRSPPPAAEPGVRDGGLRYARGGGRP 77
            H  P P    G+R GG    RGGG P
Sbjct: 925  HPPPSPGGSTGIRGGGYSGIRGGGSP 950

>VCOM_ADEM1 (O10442) Minor core protein (Protein V) (pV)|
          Length = 228

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +2

Query: 26  RLAPPRRVQSHPIAQTGRPPATARISEASITNPGLRSRRR 145
           R  PP  V+ HP  +  RPPA      A I+ P  R RRR
Sbjct: 130 RAVPPVGVRYHPSIEVARPPA------ARISPPRRRRRRR 163

>RNZ_BRAJA (Q89NF8) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3|
           endonuclease)
          Length = 301

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 154 HRSPPPAAEPGVRDGGLRYARGGGRPACLRDGMGLD 47
           H  P   A  GV DG LR     GRP  + DG  +D
Sbjct: 157 HLLPDRLASLGVPDGPLRGELAQGRPVVIEDGRTID 192

>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43) (Homologous to ALR protein)
          Length = 4911

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -3

Query: 193  PLISPRRAYLPNTHRSP--PPAAEPGVRDGGLRYARGGG 83
            P + PR A  P   R P  P  A  G+R  G R+   GG
Sbjct: 2449 PPLGPRYAVFPKDQRGPYPPDVASMGMRPHGFRFGFPGG 2487

>DPOLA_ORYSA (O48653) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)|
          Length = 1534

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 226 FLVVEKYLESCPLISPRRAYLPNTHRSPPPAAEPGVRDGGLRYARG 89
           F+V +K+  S    S +R   P+T  + P  A+P + D G    +G
Sbjct: 852 FIVPDKFARSKEFNSTKRKMNPDTEAARPDEADPSIDDEGHHVDQG 897

>NOLA1_HUMAN (Q9NY12) H/ACA ribonucleoprotein complex subunit 1 (Nucleolar|
           protein family A member 1) (snoRNP protein GAR1)
          Length = 217

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 19/48 (39%), Positives = 20/48 (41%)
 Frame = -3

Query: 166 LPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDGMGLDSARGSQAG 23
           LP     P P  E G   GG R  RGGGR    R G      RG + G
Sbjct: 152 LPLQRFLPRPPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGG 199

>TARSH_HUMAN (Q7Z7G0) Target of Nesh-SH3 precursor (Tarsh) (Nesh-binding|
           protein) (NeshBP) (ABI gene family member 3-binding
           protein)
          Length = 1075

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +2

Query: 38  PRRVQSHPIAQTGRPPATARISEASITNPGLRSRRR 145
           PRR    P   TG+P +   IS   IT P LRS  R
Sbjct: 716 PRRKPLPPNNVTGKPGSAGIISSGPITTPPLRSTPR 751

>NELFA_HUMAN (Q9H3P2) Negative elongation factor A (NELF-A) (Wolf-Hirschhorn|
           syndrome candidate 2 protein)
          Length = 549

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 229 PFLVVEKYLESCPLISPRRAYLPNTHRSPPPAAEPGVR 116
           P L    YL S P + P  +Y+P++   P P++    R
Sbjct: 338 PALPSTSYLPSTPSVVPASSYIPSSETPPAPSSREASR 375

>NOLA1_RAT (Q6AYA1) H/ACA ribonucleoprotein complex subunit 1 (Nucleolar|
           protein family A member 1)
          Length = 226

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 21/70 (30%), Positives = 28/70 (40%)
 Frame = -3

Query: 232 SPFLVVEKYLESCPLISPRRAYLPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDGMG 53
           S F  ++K+      + P + +LP       P    G   GG R  RGGGR    R G  
Sbjct: 138 SSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGGGGGGGRGGRGGGRGGGGRGGGR 197

Query: 52  LDSARGSQAG 23
               RG + G
Sbjct: 198 GGGFRGGRGG 207

>NELFA_MOUSE (Q8BG30) Negative elongation factor A (NELF-A) (Wolf-Hirschhorn|
           syndrome candidate 2 homolog) (mWHSC2)
          Length = 530

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 229 PFLVVEKYLESCPLISPRRAYLPNTHRSPPPAAEPGVR 116
           P L    YL S P + P  +Y+P++   P P +    R
Sbjct: 317 PTLPSTSYLPSTPSVVPASSYIPSSETPPAPPSREASR 354

>ZSWM4_HUMAN (Q9H7M6) Zinc finger SWIM domain-containing protein 4|
          Length = 989

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 16/34 (47%), Positives = 16/34 (47%)
 Frame = -3

Query: 163 PNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRD 62
           P   RS    A P  RD G   ARG GRP  L D
Sbjct: 4   PAAKRSRGCPAGPEERDAGAGAARGRGRPEALLD 37

>OST6_HUMAN (Q96QI5) Heparan sulfate glucosamine 3-O-sulfotransferase 6 (EC|
           2.8.2.23) (Heparan sulfate D-glucosaminyl
           3-O-sulfotransferase 6) (Heparan sulfate
           3-O-sulfotransferase 6) (h3-OST-6)
          Length = 342

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 106 LRYARGGGRPACLRDGMGLDSARGSQAGVRACESY 2
           L+ A+GG RP CL    G    R  QA VR  + +
Sbjct: 289 LKKAQGGSRPRCLGKSKGRPHPRVPQALVRRLQEF 323


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.132    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,783,672
Number of Sequences: 219361
Number of extensions: 684947
Number of successful extensions: 2017
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2016
length of database: 80,573,946
effective HSP length: 65
effective length of database: 66,315,481
effective search space used: 1591571544
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)