ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl07a11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009347.1| Triticum aestivum clone wlm96.pk0001.b7:fis, full... 281 6e-73
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 174 9e-41
3gb|AC137073.2| Genomic sequence for Oryza sativa, Nipponbare str... 174 9e-41
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 174 9e-41
5dbj|AK068938.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 5e-27
6gb|AY109428.1| Zea mays CL501_1 mRNA sequence 109 5e-21
7ref|NM_117209.3| Arabidopsis thaliana clathrin binding AT4G11380... 52 0.001
8gb|BT010362.1| Arabidopsis thaliana At4g11380 mRNA, complete cds 52 0.001
9emb|AL161531.2|ATCHRIV31 Arabidopsis thaliana DNA chromosome 4, ... 52 0.001
10emb|AL096882.2|ATF8L21 Arabidopsis thaliana DNA chromosome 4, BA... 52 0.001
11gb|AY093155.1| Arabidopsis thaliana beta-adaptin-like protein (A... 52 0.001
12emb|BX828065.1|CNS0A2BU Arabidopsis thaliana Full-length cDNA Co... 52 0.001
13gb|AF216386.1|AF216386 Arabidopsis thaliana beta-adaptin-like pr... 52 0.001
14gb|BT016054.1| Drosophila melanogaster LP17054 full insert cDNA 48 0.014
15ref|NM_078691.2| Drosophila melanogaster Adaptin CG12532-RA (Bap... 48 0.014
16gb|AC010671.8|AC010671 Drosophila melanogaster, chromosome X, re... 48 0.014
17gb|AC012165.6|AC012165 Drosophila melanogaster, chromosome X, re... 48 0.014
18gb|AE003513.3| Drosophila melanogaster chromosome X, section 65 ... 48 0.014
19emb|X75910.1|DMBA D.melanogaster mRNA for beta-adaptin 48 0.014
20gb|AC135795.21| Medicago truncatula clone mth2-28g10, complete s... 44 0.22
21gb|AC150889.3| Medicago truncatula chromosome 7 BAC clone mte1-6... 44 0.22
22gb|AC140441.3| Mus musculus BAC clone RP23-82A21 from chromosome... 42 0.89
23emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete ... 42 0.89
24gb|AF367600.1| Merxmuellera disticha internal transcribed spacer... 42 0.89
25gb|AY819719.1| Sugarcane mosaic virus isolate FER-1 capsid prote... 40 3.5
26gb|AY819718.1| Sugarcane mosaic virus isolate PIR-2 capsid prote... 40 3.5
27gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones B... 40 3.5
28gb|DQ227694.1| Sugarcane mosaic virus isolate GX-1 polyprotein g... 40 3.5
29ref|XM_426433.1| PREDICTED: Gallus gallus similar to Butyrate re... 40 3.5
30gb|AY590778.1| Sugarcane mosaic virus polyprotein mRNA, partial cds 40 3.5
31ref|XM_755086.1| Ustilago maydis 521 hypothetical protein (UM040... 40 3.5
32gb|DQ141605.1| Sugarcane mosaic virus polyprotein mRNA, partial cds 40 3.5
33emb|AM040436.1| Sugarcane mosaic virus partial cp gene for coat ... 40 3.5
34gb|AC096051.7| Rattus norvegicus 10 BAC CH230-21G1 (Children's H... 40 3.5
35emb|AJ278405.1|SMO278405 Sugarcane mosaic virus genomic RNA for ... 40 3.5
36gb|AC158645.6| Mus musculus 6 BAC RP23-435I16 (Roswell Park Canc... 40 3.5
37gb|DQ438949.1| Sugarcane mosaic virus isolate KhzQ86 polyprotein... 40 3.5
38gb|AC020912.6| Homo sapiens chromosome 19 clone CTD-2583G20, com... 40 3.5
39gb|U78045.1|HSU78045 Human collagenase and stromelysin genes, co... 40 3.5
40gb|DQ369960.1| Sugarcane mosaic virus isolate KhzL66 polyprotein... 40 3.5
41gb|AY836523.1| Sugarcane mosaic virus strain E polyprotein gene,... 40 3.5
42gb|AY241923.1| Sugarcane mosaic virus nonfunctional polyprotein ... 40 3.5
43gb|AF090447.2| Zea mays 22 kDa alpha zein gene cluster, complete... 40 3.5
44dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.5
45gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 40 3.5
46gb|DQ343236.1| Sugarcane mosaic virus nonfunctional coat protein... 40 3.5
47gb|AY953351.1| Sugarcane mosaic virus strain D polyprotein mRNA,... 40 3.5
48emb|AJ491974.1|SMO491974 Sugarcane mosaic virus partial cp gene ... 40 3.5
49emb|AJ491973.1|SMO491973 Sugarcane mosaic virus partial cp gene ... 40 3.5
50emb|AJ491972.1|SMO491972 Sugarcane mosaic virus partial cp gene ... 40 3.5
51emb|AJ491970.1|SMO491970 Sugarcane mosaic virus partial cp gene ... 40 3.5
52emb|AJ491969.1|SMO491969 Sugarcane mosaic virus partial cp gene ... 40 3.5
53emb|AJ491968.1|SMO491968 Sugarcane mosaic virus partial cp gene ... 40 3.5
54emb|AJ491967.1|SMO491967 Sugarcane mosaic virus partial cp gene ... 40 3.5
55emb|AJ491966.1|SMO491966 Sugarcane mosaic virus partial cp gene ... 40 3.5
56emb|AJ491965.1|SMO491965 Sugarcane mosaic virus partial cp gene ... 40 3.5
57emb|AJ491964.1|SMO491964 Sugarcane mosaic virus partial cp gene ... 40 3.5
58emb|AJ491963.1|SMO491963 Sugarcane mosaic virus partial cp gene ... 40 3.5
59emb|AJ491959.1|SMO491959 Sugarcane mosaic virus partial cp gene ... 40 3.5
60emb|AJ491956.1|SMO491956 Sugarcane mosaic virus partial cp gene ... 40 3.5
61emb|AJ491955.1|SMO491955 Sugarcane mosaic virus partial cp gene ... 40 3.5
62emb|AJ491954.1|SMO491954 Sugarcane mosaic virus partial cp gene ... 40 3.5
63emb|AJ491953.1|SMO491953 Sugarcane mosaic virus partial cp gene ... 40 3.5
64emb|AJ491952.1|SMO491952 Sugarcane mosaic virus partial cp gene ... 40 3.5
65emb|AJ491950.1|SMO491950 Sugarcane mosaic virus partial cp gene ... 40 3.5
66emb|AJ491949.1|SMO491949 Sugarcane mosaic virus partial cp gene ... 40 3.5
67emb|AJ491948.1|SMO491948 Sugarcane mosaic virus partial cp gene ... 40 3.5
68emb|AJ491943.1|SMO491943 Sugarcane mosaic virus partial cp gene ... 40 3.5
69gb|AC154040.7| Mus musculus 10 BAC RP23-348E15 (Roswell Park Can... 40 3.5
70gb|DQ316252.1| Sugarcane mosaic virus isolate wd-sg polyprotein ... 40 3.5
71gb|DQ316251.1| Sugarcane mosaic virus isolate wd-dz polyprotein ... 40 3.5
72gb|DQ316250.1| Sugarcane mosaic virus isolate so-bl6 polyprotein... 40 3.5
73gb|DQ316249.1| Sugarcane mosaic virus isolate so-bl5 polyprotein... 40 3.5
74gb|DQ316248.1| Sugarcane mosaic virus isolate so-bl4 polyprotein... 40 3.5
75gb|DQ316247.1| Sugarcane mosaic virus isolate so-bl2 polyprotein... 40 3.5
76gb|DQ316244.1| Sugarcane mosaic virus isolate sh-wy polyprotein ... 40 3.5
77gb|DQ316243.1| Sugarcane mosaic virus isolate sh-sx polyprotein ... 40 3.5
78gb|DQ316242.1| Sugarcane mosaic virus isolate sh-nn polyprotein ... 40 3.5
79gb|DQ316240.1| Sugarcane mosaic virus isolate sh-hp2 polyprotein... 40 3.5
80gb|DQ316239.1| Sugarcane mosaic virus isolate sh-hp1 polyprotein... 40 3.5
81gb|DQ316238.1| Sugarcane mosaic virus isolate sh-gz4 polyprotein... 40 3.5
82gb|DQ316236.1| Sugarcane mosaic virus isolate sh-gz2 polyprotein... 40 3.5
83gb|DQ316235.1| Sugarcane mosaic virus isolate sh-gz1 polyprotein... 40 3.5
84gb|DQ316234.1| Sugarcane mosaic virus isolate sh-dz polyprotein ... 40 3.5
85gb|DQ316232.1| Sugarcane mosaic virus isolate mz-gz2 polyprotein... 40 3.5
86gb|AF006738.1|AF006738 Sugarcane mosaic virus coat protein gene,... 40 3.5
87gb|AF006737.1|AF006737 Sugarcane mosaic virus coat protein gene,... 40 3.5
88gb|AF006736.1|AF006736 Sugarcane mosaic virus coat protein gene,... 40 3.5
89gb|AF006735.1|AF006735 Sugarcane mosaic virus coat protein gene,... 40 3.5
90gb|AF006733.1|AF006733 Sugarcane mosaic virus coat protein gene,... 40 3.5
91gb|AF006732.1|AF006732 Sugarcane mosaic virus coat protein gene,... 40 3.5
92gb|AF006731.1|AF006731 Sugarcane mosaic virus coat protein gene,... 40 3.5
93gb|AF006730.1|AF006730 Sugarcane mosaic virus coat protein gene,... 40 3.5
94gb|AF006729.1|AF006729 Sugarcane mosaic virus coat protein gene,... 40 3.5
95gb|AF006728.1|AF006728 Sugarcane mosaic virus coat protein gene,... 40 3.5
96gb|U57354.1|SMU57354 Sugarcane mosaic virus strain A polyprotein... 40 3.5
97gb|U57357.1|SMU57357 Sugarcane mosaic virus strain E polyprotein... 40 3.5
98gb|U57356.1|SMU57356 Sugarcane mosaic virus strain D polyprotein... 40 3.5
99gb|M21778.1|PIJ101CG Plasmid pIJ101 (from S.lividans), complete ... 40 3.5
100dbj|D00948.1|MSCCP Sugarcane mosaic virus mRNA for coat protein,... 40 3.5 
>gb|BT009347.1| Triticum aestivum clone wlm96.pk0001.b7:fis, full insert mRNA
           sequence
          Length = 2214

 Score =  281 bits (142), Expect = 6e-73
 Identities = 207/228 (90%), Gaps = 8/228 (3%)
 Strand = Plus / Plus

                                                                       
Query: 48  tccaatcccatcccatcgcgcagacaggcaggc-------cgcccgccaccgcgcgc-at 99
           |||||||||||||||| |||||| |||||||||       || ||||| |||||||| | 
Sbjct: 29  tccaatcccatcccattgcgcaggcaggcaggcaggccgccgaccgccgccgcgcgcgag 88

                                                                       
Query: 100 atcggaggcctccatcacgaaccccgggctccgcagccggaggcggtgaccggtgtgtat 159
           |||||| ||||||| ||||| |||| |||||||||||||||||||| |||||||| || |
Sbjct: 89  atcggacgcctccaccacgaccccccggctccgcagccggaggcggcgaccggtgcgtgt 148

                                                                       
Query: 160 ttggcaggtaggctcgccggggcgatatgagcgggcacgactccaagtacttctccacca 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ttggcaggtaggctcgccggggcgatatgagcgggcacgactccaagtacttctccacca 208

                                                           
Query: 220 ccaaaaagggggagatgcccgagctcaaggaggagctcaactcccagt 267
           |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 209 ccaaaaagggggagatccccgagctcaaggaggagctcaactcccagt 256
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  174 bits (88), Expect = 9e-41
 Identities = 97/100 (97%)
 Strand = Plus / Minus

                                                                            
Query: 168      taggctcgccggggcgatatgagcgggcacgactccaagtacttctccaccaccaaaaag 227
                ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 13567353 taggctcgccggggcgagatgagcgggcacgactccaagtacttctccaccaccaagaag 13567294

                                                        
Query: 228      ggggagatgcccgagctcaaggaggagctcaactcccagt 267
                |||||||| |||||||||||||||||||||||||||||||
Sbjct: 13567293 ggggagatccccgagctcaaggaggagctcaactcccagt 13567254
to top
>gb|AC137073.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0005A11, from chromosome 3, complete sequence
          Length = 168219

 Score =  174 bits (88), Expect = 9e-41
 Identities = 97/100 (97%)
 Strand = Plus / Minus

                                                                          
Query: 168    taggctcgccggggcgatatgagcgggcacgactccaagtacttctccaccaccaaaaag 227
              ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 127244 taggctcgccggggcgagatgagcgggcacgactccaagtacttctccaccaccaagaag 127185

                                                      
Query: 228    ggggagatgcccgagctcaaggaggagctcaactcccagt 267
              |||||||| |||||||||||||||||||||||||||||||
Sbjct: 127184 ggggagatccccgagctcaaggaggagctcaactcccagt 127145
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  174 bits (88), Expect = 9e-41
 Identities = 97/100 (97%)
 Strand = Plus / Minus

                                                                            
Query: 168      taggctcgccggggcgatatgagcgggcacgactccaagtacttctccaccaccaaaaag 227
                ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 13563228 taggctcgccggggcgagatgagcgggcacgactccaagtacttctccaccaccaagaag 13563169

                                                        
Query: 228      ggggagatgcccgagctcaaggaggagctcaactcccagt 267
                |||||||| |||||||||||||||||||||||||||||||
Sbjct: 13563168 ggggagatccccgagctcaaggaggagctcaactcccagt 13563129
to top
>dbj|AK068938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169D19, full
           insert sequence
          Length = 2979

 Score =  129 bits (65), Expect = 5e-27
 Identities = 71/73 (97%)
 Strand = Plus / Plus

                                                                       
Query: 195 cacgactccaagtacttctccaccaccaaaaagggggagatgcccgagctcaaggaggag 254
           ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 34  cacgactccaagtacttctccaccaccaagaagggggagatccccgagctcaaggaggag 93

                        
Query: 255 ctcaactcccagt 267
           |||||||||||||
Sbjct: 94  ctcaactcccagt 106
to top
>gb|AY109428.1| Zea mays CL501_1 mRNA sequence
          Length = 3187

 Score =  109 bits (55), Expect = 5e-21
 Identities = 74/82 (90%)
 Strand = Plus / Minus

                                                                        
Query: 186  atgagcgggcacgactccaagtacttctccaccaccaaaaagggggagatgcccgagctc 245
            ||||||||||||||||||||||||||||| |||||||| ||     |||| |||||||||
Sbjct: 3075 atgagcgggcacgactccaagtacttctctaccaccaagaannnnnagatccccgagctc 3016

                                  
Query: 246  aaggaggagctcaactcccagt 267
            ||||||||||||||||||||||
Sbjct: 3015 aaggaggagctcaactcccagt 2994
to top
>ref|NM_117209.3| Arabidopsis thaliana clathrin binding AT4G11380 mRNA, complete cds
          Length = 3310

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 68/82 (82%)
 Strand = Plus / Plus

                                                                       
Query: 186 atgagcgggcacgactccaagtacttctccaccaccaaaaagggggagatgcccgagctc 245
           ||||| || ||||| || || ||||||||||| || || ||||| ||||| || ||||||
Sbjct: 101 atgagtggtcacgattcgaaatacttctccacgacgaagaagggagagatccctgagctc 160

                                 
Query: 246 aaggaggagctcaactcccagt 267
           ||||| ||||| || |||||||
Sbjct: 161 aaggaagagcttaattcccagt 182
to top
>gb|BT010362.1| Arabidopsis thaliana At4g11380 mRNA, complete cds
          Length = 2685

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 68/82 (82%)
 Strand = Plus / Plus

                                                                       
Query: 186 atgagcgggcacgactccaagtacttctccaccaccaaaaagggggagatgcccgagctc 245
           ||||| || ||||| || || ||||||||||| || || ||||| ||||| || ||||||
Sbjct: 1   atgagtggtcacgattcgaaatacttctccacgacgaagaagggagagatccctgagctc 60

                                 
Query: 246 aaggaggagctcaactcccagt 267
           ||||| ||||| || |||||||
Sbjct: 61  aaggaagagcttaattcccagt 82
to top
>emb|AL161531.2|ATCHRIV31 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 31
          Length = 198301

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 68/82 (82%)
 Strand = Plus / Plus

                                                                          
Query: 186    atgagcgggcacgactccaagtacttctccaccaccaaaaagggggagatgcccgagctc 245
              ||||| || ||||| || || ||||||||||| || || ||||| ||||| || ||||||
Sbjct: 164845 atgagtggtcacgattcgaaatacttctccacgacgaagaagggagagatccctgagctc 164904

                                    
Query: 246    aaggaggagctcaactcccagt 267
              ||||| ||||| || |||||||
Sbjct: 164905 aaggaagagcttaattcccagt 164926
to top
>emb|AL096882.2|ATF8L21 Arabidopsis thaliana DNA chromosome 4, BAC clone F8L21 (ESSA project)
          Length = 98948

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 68/82 (82%)
 Strand = Plus / Plus

                                                                         
Query: 186   atgagcgggcacgactccaagtacttctccaccaccaaaaagggggagatgcccgagctc 245
             ||||| || ||||| || || ||||||||||| || || ||||| ||||| || ||||||
Sbjct: 91839 atgagtggtcacgattcgaaatacttctccacgacgaagaagggagagatccctgagctc 91898

                                   
Query: 246   aaggaggagctcaactcccagt 267
             ||||| ||||| || |||||||
Sbjct: 91899 aaggaagagcttaattcccagt 91920
to top
>gb|AY093155.1| Arabidopsis thaliana beta-adaptin-like protein (At4g11380) mRNA,
           complete cds
          Length = 2972

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 68/82 (82%)
 Strand = Plus / Plus

                                                                       
Query: 186 atgagcgggcacgactccaagtacttctccaccaccaaaaagggggagatgcccgagctc 245
           ||||| || ||||| || || ||||||||||| || || ||||| ||||| || ||||||
Sbjct: 82  atgagtggtcacgattcgaaatacttctccacgacgaagaagggagagatccctgagctc 141

                                 
Query: 246 aaggaggagctcaactcccagt 267
           ||||| ||||| || |||||||
Sbjct: 142 aaggaagagcttaattcccagt 163
to top
>emb|BX828065.1|CNS0A2BU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH4ZB04 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 2928

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 68/82 (82%)
 Strand = Plus / Plus

                                                                       
Query: 186 atgagcgggcacgactccaagtacttctccaccaccaaaaagggggagatgcccgagctc 245
           ||||| || ||||| || || ||||||||||| || || ||||| ||||| || ||||||
Sbjct: 100 atgagtggtcacgattcgaaatacttctccacgacgaagaagggagagatccctgagctc 159

                                 
Query: 246 aaggaggagctcaactcccagt 267
           ||||| ||||| || |||||||
Sbjct: 160 aaggaagagcttaattcccagt 181
to top
>gb|AF216386.1|AF216386 Arabidopsis thaliana beta-adaptin-like protein B mRNA, complete cds
          Length = 2939

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 68/82 (82%)
 Strand = Plus / Plus

                                                                       
Query: 186 atgagcgggcacgactccaagtacttctccaccaccaaaaagggggagatgcccgagctc 245
           ||||| || ||||| || || ||||||||||| || || ||||| ||||| || ||||||
Sbjct: 42  atgagtggtcacgattcgaaatacttctccacgacgaagaagggagagatccctgagctc 101

                                 
Query: 246 aaggaggagctcaactcccagt 267
           ||||| ||||| || |||||||
Sbjct: 102 aaggaagagcttaattcccagt 123
to top
>gb|BT016054.1| Drosophila melanogaster LP17054 full insert cDNA
          Length = 3231

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 201 tccaagtacttctccaccaccaaaaagggggagatgcccgagctcaag 248
           |||||||||||| |||||||||| ||||| |||||   ||||||||||
Sbjct: 104 tccaagtacttcaccaccaccaagaagggcgagatcttcgagctcaag 151
to top
>ref|NM_078691.2| Drosophila melanogaster Adaptin CG12532-RA (Bap), mRNA
          Length = 3235

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 201 tccaagtacttctccaccaccaaaaagggggagatgcccgagctcaag 248
           |||||||||||| |||||||||| ||||| |||||   ||||||||||
Sbjct: 122 tccaagtacttcaccaccaccaagaagggcgagatcttcgagctcaag 169
to top
>gb|AC010671.8|AC010671 Drosophila melanogaster, chromosome X, region 18E-18F, BAC clone
              BACR33M08, complete sequence
          Length = 180263

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                              
Query: 201    tccaagtacttctccaccaccaaaaagggggagatgcccgagctcaag 248
              |||||||||||| |||||||||| ||||| |||||   ||||||||||
Sbjct: 128412 tccaagtacttcaccaccaccaagaagggcgagatcttcgagctcaag 128459
to top
>gb|AC012165.6|AC012165 Drosophila melanogaster, chromosome X, region 18F-18F, BAC clone
             BACR48P17, complete sequence
          Length = 176195

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 201   tccaagtacttctccaccaccaaaaagggggagatgcccgagctcaag 248
             |||||||||||| |||||||||| ||||| |||||   ||||||||||
Sbjct: 11772 tccaagtacttcaccaccaccaagaagggcgagatcttcgagctcaag 11819
to top
>gb|AE003513.3| Drosophila melanogaster chromosome X, section 65 of 74 of the complete
             sequence
          Length = 207432

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 201   tccaagtacttctccaccaccaaaaagggggagatgcccgagctcaag 248
             |||||||||||| |||||||||| ||||| |||||   ||||||||||
Sbjct: 31911 tccaagtacttcaccaccaccaagaagggcgagatcttcgagctcaag 31958
to top
>emb|X75910.1|DMBA D.melanogaster mRNA for beta-adaptin
          Length = 3217

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 201 tccaagtacttctccaccaccaaaaagggggagatgcccgagctcaag 248
           |||||||||||| |||||||||| ||||| |||||   ||||||||||
Sbjct: 100 tccaagtacttcaccaccaccaagaagggcgagatcttcgagctcaag 147
to top
>gb|AC135795.21| Medicago truncatula clone mth2-28g10, complete sequence
          Length = 110937

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 196   acgactccaagtacttctccaccaccaaaaaggg 229
             |||||||||||||||||||| |||| || |||||
Sbjct: 11116 acgactccaagtacttctcccccacgaagaaggg 11149
to top
>gb|AC150889.3| Medicago truncatula chromosome 7 BAC clone mte1-61j12, complete
             sequence
          Length = 116517

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 196   acgactccaagtacttctccaccaccaaaaaggg 229
             |||||||||||||||||||| |||| || |||||
Sbjct: 13047 acgactccaagtacttctcccccacgaagaaggg 13014
to top
>gb|AC140441.3| Mus musculus BAC clone RP23-82A21 from chromosome 5, complete sequence
          Length = 177052

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 232    agatgcccgagctcaaggagg 252
              |||||||||||||||||||||
Sbjct: 103296 agatgcccgagctcaaggagg 103276
to top
>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29
          Length = 292100

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 134    agccggaggcggtgaccggtgtgta 158
              |||||| ||||||||||||||||||
Sbjct: 233754 agccgggggcggtgaccggtgtgta 233730
to top
>gb|AF367600.1| Merxmuellera disticha internal transcribed spacer 1, 5.8S ribosomal
           RNA gene and internal transcribed spacer 2, complete
           sequence
          Length = 597

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 74  ggcaggccgcccgccaccgcgcgca 98
           ||||||||| |||||||||||||||
Sbjct: 190 ggcaggccgaccgccaccgcgcgca 166
to top
>gb|AY819719.1| Sugarcane mosaic virus isolate FER-1 capsid protein (cp) gene,
           partial cds
          Length = 851

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
to top
>gb|AY819718.1| Sugarcane mosaic virus isolate PIR-2 capsid protein (cp) gene,
           partial cds
          Length = 886

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
to top
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness
             locus region
          Length = 160897

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   accaccaaaaagggggagat 235
             ||||||||||||||||||||
Sbjct: 38218 accaccaaaaagggggagat 38199
to top
>gb|DQ227694.1| Sugarcane mosaic virus isolate GX-1 polyprotein gene, partial cds
          Length = 906

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 93  agctcaaggaggagctcaac 112
to top
>ref|XM_426433.1| PREDICTED: Gallus gallus similar to Butyrate response factor 1
           (TIS11B protein) (EGF-inducible protein CMG1)
           (LOC428877), mRNA
          Length = 1326

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 78  ggccgcccgccaccgcgcgc 97
           ||||||||||||||||||||
Sbjct: 877 ggccgcccgccaccgcgcgc 858
to top
>gb|AY590778.1| Sugarcane mosaic virus polyprotein mRNA, partial cds
          Length = 1812

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 717 agctcaaggaggagctcaac 736
to top
>ref|XM_755086.1| Ustilago maydis 521 hypothetical protein (UM04032.1) partial mRNA
          Length = 2547

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 242  gctcaaggaggagctcaact 261
            ||||||||||||||||||||
Sbjct: 993  gctcaaggaggagctcaact 1012
to top
>gb|DQ141605.1| Sugarcane mosaic virus polyprotein mRNA, partial cds
          Length = 2116

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 241  agctcaaggaggagctcaac 260
            ||||||||||||||||||||
Sbjct: 1950 agctcaaggaggagctcaac 1969
to top
>emb|AM040436.1| Sugarcane mosaic virus partial cp gene for coat protein, genomic
           RNA
          Length = 888

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
to top
>gb|AC096051.7| Rattus norvegicus 10 BAC CH230-21G1 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 216194

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   ttctccaccaccaaaaaggg 229
             ||||||||||||||||||||
Sbjct: 73276 ttctccaccaccaaaaaggg 73257
to top
>emb|AJ278405.1|SMO278405 Sugarcane mosaic virus genomic RNA for polyprotein (vp gene), strain
            A, isolate Brisbane
          Length = 9589

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 241  agctcaaggaggagctcaac 260
            ||||||||||||||||||||
Sbjct: 8472 agctcaaggaggagctcaac 8491
to top
>gb|AC158645.6| Mus musculus 6 BAC RP23-435I16 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 177739

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     actctcgcacgcacgcacac 24
             ||||||||||||||||||||
Sbjct: 70004 actctcgcacgcacgcacac 70023
to top
>gb|DQ438949.1| Sugarcane mosaic virus isolate KhzQ86 polyprotein gene, partial
           cds; and 3' UTR
          Length = 1815

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 717 agctcaaggaggagctcaac 736
to top
>gb|AC020912.6| Homo sapiens chromosome 19 clone CTD-2583G20, complete sequence
          Length = 163225

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 205    agtacttctccaccaccaaa 224
              ||||||||||||||||||||
Sbjct: 135966 agtacttctccaccaccaaa 135985
to top
>gb|U78045.1|HSU78045 Human collagenase and stromelysin genes, complete cds, and
             metalloelastase gene, partial cds
          Length = 81826

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    cgcacgcacgcacacccgcc 29
             ||||||||||||||||||||
Sbjct: 60689 cgcacgcacgcacacccgcc 60708
to top
>gb|DQ369960.1| Sugarcane mosaic virus isolate KhzL66 polyprotein gene, partial cds
          Length = 2002

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 903 agctcaaggaggagctcaac 922
to top
>gb|AY836523.1| Sugarcane mosaic virus strain E polyprotein gene, partial cds
          Length = 1795

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 697 agctcaaggaggagctcaac 716
to top
>gb|AY241923.1| Sugarcane mosaic virus nonfunctional polyprotein mRNA, partial
           sequence
          Length = 1330

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 231 agctcaaggaggagctcaac 250
to top
>gb|AF090447.2| Zea mays 22 kDa alpha zein gene cluster, complete sequence
          Length = 346296

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 216    accaccaaaaagggggagat 235
              ||||||||||||||||||||
Sbjct: 317303 accaccaaaaagggggagat 317322
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 74      ggcaggccgcccgccaccgcgcgc 97
               ||||| ||||||||||||||||||
Sbjct: 2240950 ggcagcccgcccgccaccgcgcgc 2240973
to top
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   accaccaaaaagggggagat 235
             ||||||||||||||||||||
Sbjct: 35304 accaccaaaaagggggagat 35323
to top
>gb|DQ343236.1| Sugarcane mosaic virus nonfunctional coat protein gene, complete
           sequence
          Length = 899

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 85  agctcaaggaggagctcaac 104
to top
>gb|AY953351.1| Sugarcane mosaic virus strain D polyprotein mRNA, partial cds
          Length = 1368

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 273 agctcaaggaggagctcaac 292
to top
>emb|AJ491974.1|SMO491974 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate ZAF 54-1
          Length = 852

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491973.1|SMO491973 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate ZAF 53-1
          Length = 852

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491972.1|SMO491972 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate ZAF 52-1
          Length = 852

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491970.1|SMO491970 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate USA Lou 45-1
          Length = 840

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491969.1|SMO491969 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate USA Lou 44-1
          Length = 840

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491968.1|SMO491968 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate USA Lou 43-1
          Length = 840

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491967.1|SMO491967 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate USA Lou 42-1
          Length = 840

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491966.1|SMO491966 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate USA Lou 41-1
          Length = 828

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491965.1|SMO491965 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate USA Lou 40-1
          Length = 828

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491964.1|SMO491964 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate USA Flo 8-1
          Length = 840

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491963.1|SMO491963 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate EGY7-1
          Length = 852

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491959.1|SMO491959 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON12-1
          Length = 852

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491956.1|SMO491956 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON111-1
          Length = 852

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491955.1|SMO491955 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON110-1
          Length = 852

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491954.1|SMO491954 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON11-1
          Length = 852

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491953.1|SMO491953 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON109-1
          Length = 852

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491952.1|SMO491952 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON108-1
          Length = 852

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491950.1|SMO491950 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON106-1
          Length = 852

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491949.1|SMO491949 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON105-1
          Length = 852

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491948.1|SMO491948 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON104-1
          Length = 852

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>emb|AJ491943.1|SMO491943 Sugarcane mosaic virus partial cp gene for capsid protein, genomic
           RNA, isolate CON10-1
          Length = 852

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 63  agctcaaggaggagctcaac 82
to top
>gb|AC154040.7| Mus musculus 10 BAC RP23-348E15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 210862

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     cgcacgcacgcacacccgcc 29
              ||||||||||||||||||||
Sbjct: 148601 cgcacgcacgcacacccgcc 148620
to top
>gb|DQ316252.1| Sugarcane mosaic virus isolate wd-sg polyprotein gene, partial cds
          Length = 862

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 93  agctcaaggaggagctcaac 112
to top
>gb|DQ316251.1| Sugarcane mosaic virus isolate wd-dz polyprotein gene, partial cds
          Length = 866

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 94  agctcaaggaggagctcaac 113
to top
>gb|DQ316250.1| Sugarcane mosaic virus isolate so-bl6 polyprotein gene, partial cds
          Length = 859

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 86  agctcaaggaggagctcaac 105
to top
>gb|DQ316249.1| Sugarcane mosaic virus isolate so-bl5 polyprotein gene, partial cds
          Length = 860

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 93  agctcaaggaggagctcaac 112
to top
>gb|DQ316248.1| Sugarcane mosaic virus isolate so-bl4 polyprotein gene, partial cds
          Length = 892

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 87  agctcaaggaggagctcaac 106
to top
>gb|DQ316247.1| Sugarcane mosaic virus isolate so-bl2 polyprotein gene, partial cds
          Length = 851

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 53  agctcaaggaggagctcaac 72
to top
>gb|DQ316244.1| Sugarcane mosaic virus isolate sh-wy polyprotein gene, partial cds
          Length = 822

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 54  agctcaaggaggagctcaac 73
to top
>gb|DQ316243.1| Sugarcane mosaic virus isolate sh-sx polyprotein gene, partial cds
          Length = 842

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 71  agctcaaggaggagctcaac 90
to top
>gb|DQ316242.1| Sugarcane mosaic virus isolate sh-nn polyprotein gene, partial cds
          Length = 778

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 47  agctcaaggaggagctcaac 66
to top
>gb|DQ316240.1| Sugarcane mosaic virus isolate sh-hp2 polyprotein gene, partial cds
          Length = 859

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 93  agctcaaggaggagctcaac 112
to top
>gb|DQ316239.1| Sugarcane mosaic virus isolate sh-hp1 polyprotein gene, partial cds
          Length = 856

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 93  agctcaaggaggagctcaac 112
to top
>gb|DQ316238.1| Sugarcane mosaic virus isolate sh-gz4 polyprotein gene, partial cds
          Length = 843

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 86  agctcaaggaggagctcaac 105
to top
>gb|DQ316236.1| Sugarcane mosaic virus isolate sh-gz2 polyprotein gene, partial cds
          Length = 854

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 87  agctcaaggaggagctcaac 106
to top
>gb|DQ316235.1| Sugarcane mosaic virus isolate sh-gz1 polyprotein gene, partial cds
          Length = 860

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 87  agctcaaggaggagctcaac 106
to top
>gb|DQ316234.1| Sugarcane mosaic virus isolate sh-dz polyprotein gene, partial cds
          Length = 780

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 48  agctcaaggaggagctcaac 67
to top
>gb|DQ316232.1| Sugarcane mosaic virus isolate mz-gz2 polyprotein gene, partial cds
          Length = 828

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 78  agctcaaggaggagctcaac 97
to top
>gb|AF006738.1|AF006738 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 942

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
to top
>gb|AF006737.1|AF006737 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 942

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
to top
>gb|AF006736.1|AF006736 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 918

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
to top
>gb|AF006735.1|AF006735 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 942

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
to top
>gb|AF006733.1|AF006733 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 921

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
to top
>gb|AF006732.1|AF006732 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 921

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
to top
>gb|AF006731.1|AF006731 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 942

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
to top
>gb|AF006730.1|AF006730 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 921

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
to top
>gb|AF006729.1|AF006729 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 903

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
to top
>gb|AF006728.1|AF006728 Sugarcane mosaic virus coat protein gene, partial cds
          Length = 942

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 75  agctcaaggaggagctcaac 94
to top
>gb|U57354.1|SMU57354 Sugarcane mosaic virus strain A polyprotein mRNA, partial cds
          Length = 1977

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 903 agctcaaggaggagctcaac 922
to top
>gb|U57357.1|SMU57357 Sugarcane mosaic virus strain E polyprotein mRNA, partial cds
          Length = 2001

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 903 agctcaaggaggagctcaac 922
to top
>gb|U57356.1|SMU57356 Sugarcane mosaic virus strain D polyprotein mRNA, partial cds
          Length = 1989

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 903 agctcaaggaggagctcaac 922
to top
>gb|M21778.1|PIJ101CG Plasmid pIJ101 (from S.lividans), complete genome
          Length = 8830

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 26   cgcctggctccccctcgccg 45
            ||||||||||||||||||||
Sbjct: 3305 cgcctggctccccctcgccg 3286
to top
>dbj|D00948.1|MSCCP Sugarcane mosaic virus mRNA for coat protein, partial cds
          Length = 1330

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 agctcaaggaggagctcaac 260
           ||||||||||||||||||||
Sbjct: 231 agctcaaggaggagctcaac 250


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,874,430
Number of Sequences: 3902068
Number of extensions: 1874430
Number of successful extensions: 93182
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92934
Number of HSP's gapped (non-prelim): 246
length of query: 270
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 248
effective length of database: 17,147,199,772
effective search space: 4252505543456
effective search space used: 4252505543456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top