ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl07a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... 174 9e-44
2LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC... 65 1e-10
3HECD1_HUMAN (Q9ULT8) E3 ubiquitin-protein ligase HECTD1 (HECT do... 34 0.19
4DP87_DICDI (Q04503) Prespore protein DP87 precursor 30 3.6
5SYH_PROMM (Q7V4P3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 30 3.6
6SYA_THET8 (P74941) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 28 8.1
7SYA_THET2 (P61707) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 28 8.1

>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
           (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score =  174 bits (441), Expect = 9e-44
 Identities = 90/104 (86%), Positives = 90/104 (86%), Gaps = 1/104 (0%)
 Frame = +3

Query: 141 MLTATKPLVGGACAAPSS-ARRRTFVVPEARRKPGNGRRTSVSKVGXXXXXXXXXXXXXL 317
           MLTATKPLVGGACAAPSS ARRRTFVVPEARRKPGNGRRTSVSKVG             L
Sbjct: 1   MLTATKPLVGGACAAPSSSARRRTFVVPEARRKPGNGRRTSVSKVGSTSTSTTTTTTTTL 60

Query: 318 SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGVRD 449
           SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGVRD
Sbjct: 61  SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGVRD 104



to top

>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)|
           (LOX2:Hv:2)
          Length = 932

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 46/96 (47%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
 Frame = +3

Query: 141 MLTATKPLVGGACAAPSSARRRTFVVPEARRKPG-NGRRTSVSKVGXXXXXXXXXXXXXL 317
           M TATKPLVG A A P S RR +F+V EARRKP  N RRT V                 +
Sbjct: 1   MQTATKPLVG-ARAVPLS-RRASFLVAEARRKPSTNARRTRVG------STSTTTTTTTI 52

Query: 318 SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHM 425
             D NG A+ TV +P  H  D     EMKATV+VHM
Sbjct: 53  LTDVNGPALTTVAKPG-HQYDLKQTVEMKATVSVHM 87



to top

>HECD1_HUMAN (Q9ULT8) E3 ubiquitin-protein ligase HECTD1 (HECT domain-containing|
            protein 1) (E3 ligase for inhibin receptor) (EULIR)
          Length = 2612

 Score = 33.9 bits (76), Expect = 0.19
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 5/127 (3%)
 Frame = +3

Query: 72   TNQDGATFRPIA*RNSQHRSVPTMLTATKPLVGGACAAPSSARRRTFVVPEARRKPGNGR 251
            TN++ A+ RP++   S   SV ++L A  P+   A + P+ + R T  +    R+  N  
Sbjct: 1500 TNKEAASQRPLSSSASNRLSVSSLLAAGAPMSSSA-SVPNLSSRETSSLESFVRRVANIA 1558

Query: 252  RTSVSKVGXXXXXXXXXXXXXLSADSNGAAVG-----TVTRPDVHVQDRTHATEMKATVT 416
            RT+ +                 S+D+N   +G     T T P +  Q   + T    T T
Sbjct: 1559 RTNATN---------NMNLSRSSSDNNTNTLGRNVMSTATSPLMGAQSFPNLTTPGTTST 1609

Query: 417  VHMSKAA 437
            V MS ++
Sbjct: 1610 VTMSTSS 1616



to top

>DP87_DICDI (Q04503) Prespore protein DP87 precursor|
          Length = 555

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = +2

Query: 71  NQPRRCNLPPHRVAQ*PTP*RTHDADGDQAASRGRVCRAVVGPAEDVRGAR 223
           N+  +C L PHR    P P    D   +Q    G  CR + G A  VR AR
Sbjct: 189 NEHGKCRLVPHR----PPPRPPVDQCRNQHCPHGYSCRVIKGCATCVRDAR 235



to top

>SYH_PROMM (Q7V4P3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 436

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 315 LSADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGV 443
           ++   + A +   TRPD++V +R    E  A V  H  +AAG+
Sbjct: 320 INPSGSAARLRASTRPDLYVVNRGEQAERVALVIAHQLRAAGL 362



to top

>SYA_THET8 (P74941) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 882

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -1

Query: 237 VSGEPRAPRTSSAGPTTARHTRPRLAAWSPSASWVRYGVGYCATRWGGRLHRLGW 73
           +SG P   +TS +    A H R  +AA S  A++   G GY   R   R  R G+
Sbjct: 269 MSGRPYEGKTSVSHRVIADHVRAVVAALSDGATFSNTGRGYVIRRLLRRALRHGY 323



to top

>SYA_THET2 (P61707) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 882

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -1

Query: 237 VSGEPRAPRTSSAGPTTARHTRPRLAAWSPSASWVRYGVGYCATRWGGRLHRLGW 73
           +SG P   +TS +    A H R  +AA S  A++   G GY   R   R  R G+
Sbjct: 269 MSGRPYEGKTSVSHRVIADHVRAVVAALSDGATFSNTGRGYVIRRLLRRALRHGY 323


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,159,853
Number of Sequences: 219361
Number of extensions: 1028429
Number of successful extensions: 2871
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2868
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top