Clone Name | bastl07a09 |
---|---|
Clone Library Name | barley_pub |
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 174 bits (441), Expect = 9e-44 Identities = 90/104 (86%), Positives = 90/104 (86%), Gaps = 1/104 (0%) Frame = +3 Query: 141 MLTATKPLVGGACAAPSS-ARRRTFVVPEARRKPGNGRRTSVSKVGXXXXXXXXXXXXXL 317 MLTATKPLVGGACAAPSS ARRRTFVVPEARRKPGNGRRTSVSKVG L Sbjct: 1 MLTATKPLVGGACAAPSSSARRRTFVVPEARRKPGNGRRTSVSKVGSTSTSTTTTTTTTL 60 Query: 318 SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGVRD 449 SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGVRD Sbjct: 61 SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGVRD 104
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 64.7 bits (156), Expect = 1e-10 Identities = 46/96 (47%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Frame = +3 Query: 141 MLTATKPLVGGACAAPSSARRRTFVVPEARRKPG-NGRRTSVSKVGXXXXXXXXXXXXXL 317 M TATKPLVG A A P S RR +F+V EARRKP N RRT V + Sbjct: 1 MQTATKPLVG-ARAVPLS-RRASFLVAEARRKPSTNARRTRVG------STSTTTTTTTI 52 Query: 318 SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHM 425 D NG A+ TV +P H D EMKATV+VHM Sbjct: 53 LTDVNGPALTTVAKPG-HQYDLKQTVEMKATVSVHM 87
>HECD1_HUMAN (Q9ULT8) E3 ubiquitin-protein ligase HECTD1 (HECT domain-containing| protein 1) (E3 ligase for inhibin receptor) (EULIR) Length = 2612 Score = 33.9 bits (76), Expect = 0.19 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 5/127 (3%) Frame = +3 Query: 72 TNQDGATFRPIA*RNSQHRSVPTMLTATKPLVGGACAAPSSARRRTFVVPEARRKPGNGR 251 TN++ A+ RP++ S SV ++L A P+ A + P+ + R T + R+ N Sbjct: 1500 TNKEAASQRPLSSSASNRLSVSSLLAAGAPMSSSA-SVPNLSSRETSSLESFVRRVANIA 1558 Query: 252 RTSVSKVGXXXXXXXXXXXXXLSADSNGAAVG-----TVTRPDVHVQDRTHATEMKATVT 416 RT+ + S+D+N +G T T P + Q + T T T Sbjct: 1559 RTNATN---------NMNLSRSSSDNNTNTLGRNVMSTATSPLMGAQSFPNLTTPGTTST 1609 Query: 417 VHMSKAA 437 V MS ++ Sbjct: 1610 VTMSTSS 1616
>DP87_DICDI (Q04503) Prespore protein DP87 precursor| Length = 555 Score = 29.6 bits (65), Expect = 3.6 Identities = 19/51 (37%), Positives = 23/51 (45%) Frame = +2 Query: 71 NQPRRCNLPPHRVAQ*PTP*RTHDADGDQAASRGRVCRAVVGPAEDVRGAR 223 N+ +C L PHR P P D +Q G CR + G A VR AR Sbjct: 189 NEHGKCRLVPHR----PPPRPPVDQCRNQHCPHGYSCRVIKGCATCVRDAR 235
>SYH_PROMM (Q7V4P3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 436 Score = 29.6 bits (65), Expect = 3.6 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +3 Query: 315 LSADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGV 443 ++ + A + TRPD++V +R E A V H +AAG+ Sbjct: 320 INPSGSAARLRASTRPDLYVVNRGEQAERVALVIAHQLRAAGL 362
>SYA_THET8 (P74941) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 882 Score = 28.5 bits (62), Expect = 8.1 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = -1 Query: 237 VSGEPRAPRTSSAGPTTARHTRPRLAAWSPSASWVRYGVGYCATRWGGRLHRLGW 73 +SG P +TS + A H R +AA S A++ G GY R R R G+ Sbjct: 269 MSGRPYEGKTSVSHRVIADHVRAVVAALSDGATFSNTGRGYVIRRLLRRALRHGY 323
>SYA_THET2 (P61707) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 882 Score = 28.5 bits (62), Expect = 8.1 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = -1 Query: 237 VSGEPRAPRTSSAGPTTARHTRPRLAAWSPSASWVRYGVGYCATRWGGRLHRLGW 73 +SG P +TS + A H R +AA S A++ G GY R R R G+ Sbjct: 269 MSGRPYEGKTSVSHRVIADHVRAVVAALSDGATFSNTGRGYVIRRLLRRALRHGY 323 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,159,853 Number of Sequences: 219361 Number of extensions: 1028429 Number of successful extensions: 2871 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 2781 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2868 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)