Clone Name | bastl07a09 |
---|---|
Clone Library Name | barley_pub |
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA, complete cds Length = 3054 Score = 464 bits (234), Expect = e-127 Identities = 245/248 (98%), Gaps = 3/248 (1%) Strand = Plus / Plus Query: 36 tgccagggcagggttgcacagtctagctaggtcgaaaccaaccaagacggtgcaaccttc 95 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tgccagggcagggttgcacagtctagctaggtcgaaaccaaccaagacggtgcaaccttc 60 Query: 96 cgccccatcgcgtagcgcaatagccaacaccgtagcgtacccacgatgctgacggcgacc 155 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cgccccatcgcgtagcgcaatagccaacaccgtagcgtacccacgatgctgacggcgacc 120 Query: 156 aagccgctagtcgggggcgcgtgtgccgcgc---cgtcgtcggcccggcggaggacgttc 212 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 121 aagccgctagtcgggggcgcgtgtgccgcgccgtcgtcgtcggcccggcggaggacgttc 180 Query: 213 gtggtgcccgaggctcgccggaaaccaggcaatggccgccgcaccagtgtctccaaggtg 272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gtggtgcccgaggctcgccggaaaccaggcaatggccgccgcaccagtgtctccaaggtg 240 Query: 273 ggcagcac 280 |||||||| Sbjct: 241 ggcagcac 248 Score = 270 bits (136), Expect = 4e-69 Identities = 136/136 (100%) Strand = Plus / Plus Query: 315 ttgtccgccgactccaatggggcggccgttggcacggtaacccgcccggacgtccacgtc 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 283 ttgtccgccgactccaatggggcggccgttggcacggtaacccgcccggacgtccacgtc 342 Query: 375 caggaccgcacgcacgccaccgagatgaaggccacggtgacggtgcacatgagtaaggca 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 343 caggaccgcacgcacgccaccgagatgaaggccacggtgacggtgcacatgagtaaggca 402 Query: 435 gccggggttcgtgatt 450 |||||||||||||||| Sbjct: 403 gccggggttcgtgatt 418
>emb|AJ507212.1|HVU507212 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:2 gene) Length = 3023 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 395 cgagatgaaggccacggtgacggtgcacatga 426 ||||||||||||||||||| |||||||||||| Sbjct: 326 cgagatgaaggccacggtgtcggtgcacatga 357
>ref|NM_102798.1| Arabidopsis thaliana EMB2279 AT1G30610 (EMB2279) mRNA, complete cds Length = 3021 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 9 cttccatcacctcttcctttcctgatctgc 38 ||||||||||||| |||||||||| ||||| Sbjct: 2689 cttccatcacctcctcctttcctgctctgc 2660
>gb|DP000047.1| Saimiri boliviensis boliviensis target 106 genomic scaffold Length = 211360 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 cagtgtctccaaggtgggcag 277 ||||||||||||||||||||| Sbjct: 120647 cagtgtctccaaggtgggcag 120627
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ggggcgcgtgtgccgcgccg 188 |||||||||||||||||||| Sbjct: 996213 ggggcgcgtgtgccgcgccg 996232
>gb|AC146383.4| Pan troglodytes BAC clone RP43-125D18 from 7, complete sequence Length = 141329 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 cttcctttcctgatctgccagggc 44 |||||||||||||| ||||||||| Sbjct: 31172 cttcctttcctgatgtgccagggc 31149
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ggggcgcgtgtgccgcgccg 188 |||||||||||||||||||| Sbjct: 2313682 ggggcgcgtgtgccgcgccg 2313701
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ggggcgcgtgtgccgcgccg 188 |||||||||||||||||||| Sbjct: 1861233 ggggcgcgtgtgccgcgccg 1861252
>gb|AC006960.1|AC006960 Homo sapiens clone RP11-182J23 from 7p14-15, complete sequence Length = 179757 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 cttcctttcctgatctgccagggc 44 |||||||||||||| ||||||||| Sbjct: 137738 cttcctttcctgatgtgccagggc 137761
>gb|U90140.1|CBU90140 Citrobacter braakii TyrR (tyrR) gene, complete cds Length = 2046 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 gatccttccatcacctcttc 24 |||||||||||||||||||| Sbjct: 1761 gatccttccatcacctcttc 1742 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,287,756 Number of Sequences: 3902068 Number of extensions: 2287756 Number of successful extensions: 42951 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42819 Number of HSP's gapped (non-prelim): 131 length of query: 450 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 428 effective length of database: 17,147,199,772 effective search space: 7339001502416 effective search space used: 7339001502416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)