ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl07a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible l... 464 e-127
2emb|AJ507212.1|HVU507212 Hordeum vulgare mRNA for lipoxygenase 2... 56 1e-04
3ref|NM_102798.1| Arabidopsis thaliana EMB2279 AT1G30610 (EMB2279... 44 0.39
4gb|DP000047.1| Saimiri boliviensis boliviensis target 106 genomi... 42 1.5
5gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 6.1
6gb|AC146383.4| Pan troglodytes BAC clone RP43-125D18 from 7, com... 40 6.1
7emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.1
8gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 6.1
9gb|AC006960.1|AC006960 Homo sapiens clone RP11-182J23 from 7p14-... 40 6.1
10gb|U90140.1|CBU90140 Citrobacter braakii TyrR (tyrR) gene, compl... 40 6.1

>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA,
           complete cds
          Length = 3054

 Score =  464 bits (234), Expect = e-127
 Identities = 245/248 (98%), Gaps = 3/248 (1%)
 Strand = Plus / Plus

                                                                       
Query: 36  tgccagggcagggttgcacagtctagctaggtcgaaaccaaccaagacggtgcaaccttc 95
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgccagggcagggttgcacagtctagctaggtcgaaaccaaccaagacggtgcaaccttc 60

                                                                       
Query: 96  cgccccatcgcgtagcgcaatagccaacaccgtagcgtacccacgatgctgacggcgacc 155
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgccccatcgcgtagcgcaatagccaacaccgtagcgtacccacgatgctgacggcgacc 120

                                                                       
Query: 156 aagccgctagtcgggggcgcgtgtgccgcgc---cgtcgtcggcccggcggaggacgttc 212
           |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 121 aagccgctagtcgggggcgcgtgtgccgcgccgtcgtcgtcggcccggcggaggacgttc 180

                                                                       
Query: 213 gtggtgcccgaggctcgccggaaaccaggcaatggccgccgcaccagtgtctccaaggtg 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtggtgcccgaggctcgccggaaaccaggcaatggccgccgcaccagtgtctccaaggtg 240

                   
Query: 273 ggcagcac 280
           ||||||||
Sbjct: 241 ggcagcac 248



 Score =  270 bits (136), Expect = 4e-69
 Identities = 136/136 (100%)
 Strand = Plus / Plus

                                                                       
Query: 315 ttgtccgccgactccaatggggcggccgttggcacggtaacccgcccggacgtccacgtc 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttgtccgccgactccaatggggcggccgttggcacggtaacccgcccggacgtccacgtc 342

                                                                       
Query: 375 caggaccgcacgcacgccaccgagatgaaggccacggtgacggtgcacatgagtaaggca 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 caggaccgcacgcacgccaccgagatgaaggccacggtgacggtgcacatgagtaaggca 402

                           
Query: 435 gccggggttcgtgatt 450
           ||||||||||||||||
Sbjct: 403 gccggggttcgtgatt 418



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>emb|AJ507212.1|HVU507212 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:2 gene)
          Length = 3023

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 395 cgagatgaaggccacggtgacggtgcacatga 426
           ||||||||||||||||||| ||||||||||||
Sbjct: 326 cgagatgaaggccacggtgtcggtgcacatga 357



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>ref|NM_102798.1| Arabidopsis thaliana EMB2279 AT1G30610 (EMB2279) mRNA, complete cds
          Length = 3021

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 9    cttccatcacctcttcctttcctgatctgc 38
            ||||||||||||| |||||||||| |||||
Sbjct: 2689 cttccatcacctcctcctttcctgctctgc 2660



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>gb|DP000047.1| Saimiri boliviensis boliviensis target 106 genomic scaffold
          Length = 211360

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 257    cagtgtctccaaggtgggcag 277
              |||||||||||||||||||||
Sbjct: 120647 cagtgtctccaaggtgggcag 120627



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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    ggggcgcgtgtgccgcgccg 188
              ||||||||||||||||||||
Sbjct: 996213 ggggcgcgtgtgccgcgccg 996232



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>gb|AC146383.4| Pan troglodytes BAC clone RP43-125D18 from 7, complete sequence
          Length = 141329

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 21    cttcctttcctgatctgccagggc 44
             |||||||||||||| |||||||||
Sbjct: 31172 cttcctttcctgatgtgccagggc 31149



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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 169     ggggcgcgtgtgccgcgccg 188
               ||||||||||||||||||||
Sbjct: 2313682 ggggcgcgtgtgccgcgccg 2313701



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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 169     ggggcgcgtgtgccgcgccg 188
               ||||||||||||||||||||
Sbjct: 1861233 ggggcgcgtgtgccgcgccg 1861252



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>gb|AC006960.1|AC006960 Homo sapiens clone RP11-182J23 from 7p14-15, complete sequence
          Length = 179757

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 21     cttcctttcctgatctgccagggc 44
              |||||||||||||| |||||||||
Sbjct: 137738 cttcctttcctgatgtgccagggc 137761



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>gb|U90140.1|CBU90140 Citrobacter braakii TyrR (tyrR) gene, complete cds
          Length = 2046

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 5    gatccttccatcacctcttc 24
            ||||||||||||||||||||
Sbjct: 1761 gatccttccatcacctcttc 1742


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,287,756
Number of Sequences: 3902068
Number of extensions: 2287756
Number of successful extensions: 42951
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42819
Number of HSP's gapped (non-prelim): 131
length of query: 450
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 428
effective length of database: 17,147,199,772
effective search space: 7339001502416
effective search space used: 7339001502416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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