ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl07a08 |
|---|---|
| Clone Library Name | barley_pub |
>MAPT_ARATH (Q9T041) Microtubule-associated protein TORTIFOLIA1| (Microtubule-associated protein SPIRAL2) (Protein CONVOLUTA) Length = 864 Score = 57.0 bits (136), Expect = 2e-08 Identities = 28/76 (36%), Positives = 49/76 (64%), Gaps = 2/76 (2%) Frame = +1 Query: 235 PARHRTASSAGMKSSTAAPS--KGKAAFELKHKLVQALNKIADRDTYQIGLSELQTTVDA 408 P R +SS +S + + S +A ELK K++ +++K+ADRDTYQI + +L+ T+ + Sbjct: 13 PTRPARSSSLATRSCSNSGSLTSFQAMVELKQKILTSISKLADRDTYQIAVEDLEKTIQS 72 Query: 409 LAPDMVGPFLSCVIDT 456 L P+ + FL+C+ D+ Sbjct: 73 LTPETLPMFLNCLYDS 88
>SWC4_NEUCR (Q870Q1) SWR1-complex protein 4| Length = 771 Score = 34.7 bits (78), Expect = 0.12 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = -1 Query: 127 AAAVARSPSVRPSVRPARSLSAGESCLPGDKHKPPIR 17 AAAVA +P V P+ SL+A + D H+PP+R Sbjct: 359 AAAVAAAPEVPPAASRRESLAASSTAGANDHHEPPVR 395
>DDEF1_HUMAN (Q9ULH1) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent| ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP) (ADP-ribosylation factor-directed GTPase-activating protein 1) (ARF GTPase-activating protein 1) (Development and differe Length = 956 Score = 33.9 bits (76), Expect = 0.20 Identities = 20/70 (28%), Positives = 26/70 (37%) Frame = +1 Query: 91 TDGRTESAPPPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASSAGM 270 T TE+ P PP + G GP ++ P S+ PPP RT S Sbjct: 611 TSPTTEAPPLPPRNAGKGPTGPPSTLPLSTQTSSGSSTLSKKRPPPPPPGHKRTLSDPPS 670 Query: 271 KSSTAAPSKG 300 P+KG Sbjct: 671 PLPHGPPNKG 680
>MPC1_RALEU (P17295) Metapyrocatechase 1 (EC 1.13.11.2) (CatO2ase) (Catechol| 2,3-dioxygenase I) Length = 313 Score = 33.5 bits (75), Expect = 0.26 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = -1 Query: 112 RSPSVRPSVRPARSLSAGESCLPGDKHKPPIRPE 11 R+PS + R AR+++A +S + GD H P+ PE Sbjct: 201 RNPSPESAARQARTVAAAKSFVAGDSHLHPLNPE 234
>PILQ_NEIMA (Q9JVW4) Type IV pilus biogenesis and competence protein pilQ| precursor Length = 761 Score = 33.1 bits (74), Expect = 0.34 Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 9/115 (7%) Frame = +1 Query: 106 ESAPPPPLDQAMGGAGPTTSS------PHPHGKMKASAPFCTS--H*DRP-PPARHRTAS 258 ++AP P Q A P+T S P K +A+APF S P PA+ + A+ Sbjct: 140 KAAPAAPAKQQ--AAAPSTKSAVSVSKPFTPAKQQAAAPFTESVVSVSAPFSPAKQQAAA 197 Query: 259 SAGMKSSTAAPSKGKAAFELKHKLVQALNKIADRDTYQIGLSELQTTVDALAPDM 423 SA K TAAP+K +AA K N +D G+ EL A PD+ Sbjct: 198 SA--KQQTAAPAKQQAATPAKQ-----TNIDFRKDGKNAGIIELAALGFAGQPDI 245
>WASF2_MOUSE (Q8BH43) Wiskott-Aldrich syndrome protein family member 2| (WASP-family protein member 2) (WAVE-2 protein) Length = 497 Score = 33.1 bits (74), Expect = 0.34 Identities = 23/68 (33%), Positives = 27/68 (39%) Frame = +1 Query: 115 PPPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASSAGMKSSTAAPS 294 PPPPL Q GGA P P P G P S D P A S K ++ P+ Sbjct: 376 PPPPLSQPSGGAPPPPPPPPPPG----PPPLPFSGADGQPAAPPPPPPSEATKPKSSLPA 431 Query: 295 KGKAAFEL 318 A +L Sbjct: 432 VSDARSDL 439
>EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa| SWI2/SNF2-related protein) (Domino homolog) (hDomino) (CAG repeat protein 32) (Trinucleotide repeat-containing gene 12 protein) Length = 3160 Score = 32.7 bits (73), Expect = 0.45 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 18/89 (20%) Frame = +1 Query: 94 DGRTESAPP--PPLDQAMGGAGPTTSSPHPHGKMK----------------ASAPFCTSH 219 +GRT + P PP A PTT+S P G ++ A+APF TS Sbjct: 1474 EGRTVAFPSTHPPRT-----AAPTTASAAPQGPLRGRPPIATFSANPEAKAAAAPFQTSQ 1528 Query: 220 *DRPPPARHRTASSAGMKSSTAAPSKGKA 306 P RH+ AS++ +S A P+K +A Sbjct: 1529 ASASAP-RHQPASASSTAASPAHPAKLRA 1556
>WASF2_HUMAN (Q9Y6W5) Wiskott-Aldrich syndrome protein family member 2| (WASP-family protein member 2) (WAVE-2 protein) (Verprolin homology domain-containing protein 2) Length = 498 Score = 32.3 bits (72), Expect = 0.58 Identities = 19/60 (31%), Positives = 23/60 (38%) Frame = +1 Query: 115 PPPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASSAGMKSSTAAPS 294 PPPPL Q GGA P P P G PPP T + + + + A S Sbjct: 379 PPPPLSQPTGGAPPPPPPPPPPGPPPPPFTGADGQPAIPPPLSDTTKPKSSLPAVSDARS 438
>MUTL_VIBVU (Q8DCV0) DNA mismatch repair protein mutL| Length = 664 Score = 32.3 bits (72), Expect = 0.58 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Frame = +1 Query: 115 PPPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASSAGMKSSTAAPS 294 P PL+ + SP PH + KA + PARH T+S+ + APS Sbjct: 392 PVAPLESSFSSEQGREVSPAPHNERKAWM-------ESRSPARHTTSSNQSERYGEPAPS 444 Query: 295 KG--KAAFELKH 324 K KA EL H Sbjct: 445 KQQVKAYAELLH 456
>DDEF1_MOUSE (Q9QWY8) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent ARF1| GTPase-activating protein (PIP2-dependent ARF1 GAP) (ADP-ribosylation factor-directed GTPase-activating protein 1) (ARF GTPase-activating protein 1) (Development and differe Length = 1147 Score = 32.0 bits (71), Expect = 0.76 Identities = 19/70 (27%), Positives = 26/70 (37%) Frame = +1 Query: 91 TDGRTESAPPPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASSAGM 270 T +E+ P PP + G GP ++ P S+ PPP RT S Sbjct: 799 TSPTSEAPPLPPRNAGKGPTGPPSTLPLGTQTSSGSSTLSKKRPPPPPPGHKRTLSDPPS 858 Query: 271 KSSTAAPSKG 300 P+KG Sbjct: 859 PLPHGPPNKG 868
>CIC_MOUSE (Q924A2) Protein capicua homolog| Length = 1606 Score = 32.0 bits (71), Expect = 0.76 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Frame = +1 Query: 109 SAPPPPL--DQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASSAGMKSST 282 S+PPPPL ++ G GP T+S P P PP A + G S+ Sbjct: 1242 SSPPPPLPAEERPGTKGPETASKFPSSSSDWRVPGLGLESRGEPPTPPSPAPATGPSGSS 1301 Query: 283 AAPSKGKA 306 + S+G + Sbjct: 1302 SGSSEGSS 1309
>RL22_DROME (P50887) 60S ribosomal protein L22| Length = 299 Score = 31.6 bits (70), Expect = 0.99 Identities = 23/89 (25%), Positives = 36/89 (40%) Frame = +1 Query: 97 GRTESAPPPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASSAGMKS 276 G+ A P A A P + P K AS P + PA+ ++A Sbjct: 90 GKKAPAAAAPKKDAKAAAAPAPAKAAP-AKKAASTPAAAPPAKKAAPAKAAAPAAAAPAP 148 Query: 277 STAAPSKGKAAFELKHKLVQALNKIADRD 363 + AAP+ K A + K K A +K+ ++ Sbjct: 149 AAAAPAVAKPAPKPKAKAAPAPSKVVKKN 177
>LIPB_DEIRA (Q9RWA5) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier| protein]-protein-N-lipoyltransferase) (Lipoate-protein ligase B) Length = 336 Score = 31.6 bits (70), Expect = 0.99 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Frame = -1 Query: 250 CGDELAGVGLSGWCRRGRMPSSSHGGEGWRW*VRHHPWL-DPAAAVARS-PSVRPSVRPA 77 C A LS +C GR G+GWRW P L P V +S P RP +P Sbjct: 24 CASRTAARKLSLYCSEGRTRCGMGQGKGWRWPGHRPPGLPSPTNRVGQSVPKWRP--QPH 81 Query: 76 RSLSAGES 53 ++ G + Sbjct: 82 KAAGGGRT 89
>CAC1I_HUMAN (Q9P0X4) Voltage-dependent T-type calcium channel alpha-1I subunit| (Voltage-gated calcium channel alpha subunit Cav3.3) (Ca(v)3.3) Length = 2223 Score = 30.8 bits (68), Expect = 1.7 Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 1/93 (1%) Frame = +1 Query: 142 GGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRT-ASSAGMKSSTAAPSKGKAAFEL 318 GG G + + ++ FC PPPA T A SS AAP + AA L Sbjct: 2115 GGGGAGSEHSETLSSLSLTSLFCPPP---PPPAPGLTPARKFSSTSSLAAPGRPHAA-AL 2170 Query: 319 KHKLVQALNKIADRDTYQIGLSELQTTVDALAP 417 H L ++ + ADR G + L + LAP Sbjct: 2171 AHGLARSPSWAADRSKDPPGRAPLPMGLGPLAP 2203
>CRF_HUMAN (P06850) Corticoliberin precursor (Corticotropin-releasing factor)| (CRF) (Corticotropin-releasing hormone) Length = 196 Score = 30.8 bits (68), Expect = 1.7 Identities = 17/35 (48%), Positives = 20/35 (57%) Frame = +3 Query: 18 RIGGLCLSPGRQLSPAESERAGRTDGRTDGERATA 122 R+G L SP LSPA S AG + R E+ATA Sbjct: 75 RLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATA 109
>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)| Length = 864 Score = 30.8 bits (68), Expect = 1.7 Identities = 20/67 (29%), Positives = 27/67 (40%) Frame = +1 Query: 118 PPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASSAGMKSSTAAPSK 297 PPP A+GGA P S P P S +R PP S ++S + P Sbjct: 802 PPPAGSALGGAPPVPSRPGASPDPFGPPPQVPSRPNRAPPG----VPSRSGQASPSRPES 857 Query: 298 GKAAFEL 318 + F+L Sbjct: 858 PRPPFDL 864
>DDEF1_BOVIN (O97902) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent| ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP) (ADP-ribosylation factor-directed GTPase-activating protein 1) (ARF GTPase-activating protein 1) (Development and differe Length = 1129 Score = 30.8 bits (68), Expect = 1.7 Identities = 18/65 (27%), Positives = 24/65 (36%) Frame = +1 Query: 106 ESAPPPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASSAGMKSSTA 285 E+ P PP + G GP ++ P S+ PPP RT S Sbjct: 792 EAPPLPPRNATKGPPGPPSTLPLSTQTSSGSSTLSKKRSPPPPPGHKRTLSDPPSPLPHG 851 Query: 286 APSKG 300 P+KG Sbjct: 852 PPNKG 856
>XYLB_STRCO (Q9RK00) Xylulose kinase (EC 2.7.1.17) (Xylulokinase)| Length = 481 Score = 30.4 bits (67), Expect = 2.2 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Frame = -1 Query: 271 SSRRKKRCGDELAGVGLSGWCRR-GRMPSSSHGGEGWRW*VRHHPWLDPAAAVARSP 104 S+ + +R DEL G W R G +PS+S W W H P A R P Sbjct: 105 SAPQARRLIDELGGA--KAWAERTGSVPSASFTVTKWAWLTEHEPEAARAVKAVRLP 159
>ITIH2_PIG (O02668) Inter-alpha-trypsin inhibitor heavy chain H2 precursor| (ITI heavy chain H2) (Inter-alpha-inhibitor heavy chain 2) Length = 935 Score = 30.4 bits (67), Expect = 2.2 Identities = 13/39 (33%), Positives = 18/39 (46%) Frame = +2 Query: 128 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATETDPRQLV 244 W+ P P +P PA+ P PPP E DP ++ Sbjct: 658 WVNPLPTPRVPLPAVGPSVIEATPPPHVMRVENDPHFII 696
>WNK1_MOUSE (P83741) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein| kinase with no lysine 1) (Protein kinase, lysine-deficient 1) Length = 2377 Score = 30.4 bits (67), Expect = 2.2 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Frame = +3 Query: 45 GRQLSPAESERAGRTDGRTDGERATAAAGSSHGWCRTYHLQPSPPWEDEGIRP-----LL 209 GR+ P +S+ + + + G ++ +G+ G T L P G P L Sbjct: 2117 GRRRRPTKSKGSKSSRSSSLGNKSPQLSGNLSGQSGTSVLHPQQTLHPAGNTPETGHNQL 2176 Query: 210 HQPLRPTPASSSPHRFFRRD 269 QPL+P+P+S + + F D Sbjct: 2177 LQPLKPSPSSDNLYSAFTSD 2196 Score = 28.5 bits (62), Expect = 8.4 Identities = 23/92 (25%), Positives = 37/92 (40%) Frame = +1 Query: 109 SAPPPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASSAGMKSSTAA 288 SA P +QA+ G+ TT S P + PPP+R + + Sbjct: 136 SAAASPGEQAVVGSATTTVPSSTSKDRPVSQPSLVGSKEEPPPSR------------SGS 183 Query: 289 PSKGKAAFELKHKLVQALNKIADRDTYQIGLS 384 S G +A E + Q + I + +T +G+S Sbjct: 184 GSGGASAKEAQEDRSQQQDDIEELETKAVGMS 215
>KCNA5_HUMAN (P22460) Potassium voltage-gated channel subfamily A member 5| (Voltage-gated potassium channel subunit Kv1.5) (HK2) (HPCN1) Length = 613 Score = 30.4 bits (67), Expect = 2.2 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 6/55 (10%) Frame = +3 Query: 87 TDGRTDGERATAAAGSSHGWCRTYHLQPSPPWEDEGIRPL------LHQPLRPTP 233 T G +DG + A G ++P PP D G+RPL L +P RP P Sbjct: 39 TAGLSDGPKEPAPKGRGAQRDADSGVRPLPPLPDPGVRPLPPLPEELPRPRRPPP 93
>WNK1_RAT (Q9JIH7) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein| kinase with no lysine 1) (Protein kinase, lysine-deficient 1) Length = 2126 Score = 30.4 bits (67), Expect = 2.2 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Frame = +3 Query: 45 GRQLSPAESERAGRTDGRTDGERATAAAGSSHGWCRTYHLQPSPPWEDEGIRP-----LL 209 GR+ P +S+ + + + G ++ +G+ G T L P G P L Sbjct: 1866 GRRRRPTKSKGSKSSRSSSLGNKSPQLSGNLSGQSGTSVLNPQQTLHPPGNTPETGHNQL 1925 Query: 210 HQPLRPTPASSSPHRFFRRD 269 QPL+P+P+S + + F D Sbjct: 1926 LQPLKPSPSSDNLYSAFTSD 1945
>RXRB_CANFA (Q5TJF7) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)| Length = 533 Score = 30.4 bits (67), Expect = 2.2 Identities = 17/47 (36%), Positives = 21/47 (44%) Frame = -1 Query: 220 SGWCRRGRMPSSSHGGEGWRW*VRHHPWLDPAAAVARSPSVRPSVRP 80 +G C + H G RW R PWLDPAAA A + + P Sbjct: 16 AGQCGPVGVRKEMHCGVASRW-RRRRPWLDPAAAAAAAAAAGEQQTP 61
>GAG_MSVFR (P29175) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30] Length = 309 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +2 Query: 128 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATETDPR 235 W+KP+V P L P P+ PS P+T+ PR Sbjct: 95 WVKPFVSPKLSPSPTAPI------LPSGPSTQPPPR 124
>MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protein) (86 kDa| protein) Length = 537 Score = 30.0 bits (66), Expect = 2.9 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -1 Query: 130 PAAAVARSPSVRPSVRPARSLSAGESCLPGDKHKPPIRPE 11 PA A ++P P +PA + G + P ++H PP + E Sbjct: 20 PAPASKKAPEPAPKEKPAPTPKEGHAPTPKEEHAPPPKEE 59
>GAG_MLVMO (P03332) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30; Nucleoprotein p10] Length = 537 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +2 Query: 128 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATETDP 232 W+KP+V P PPP PPSAP+ +P Sbjct: 95 WVKPFVHPKPPPPL----------PPSAPSLPLEP 119
>GAG_FSVST (P03338) Gag polyprotein [Contains: Core protein p15; Core protein| p12; Core protein p30] Length = 371 Score = 30.0 bits (66), Expect = 2.9 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +2 Query: 128 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATET 226 W++P++ P PP TP+ + P PSAP T + Sbjct: 170 WVRPFLPPPKPP---TPLPQPLSPQPSAPLTSS 199
>GAG_FSVHZ (P04322) Gag polyprotein [Contains: Core protein p15; Core protein| p12; Core protein p30] (Fragment) Length = 414 Score = 30.0 bits (66), Expect = 2.9 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +2 Query: 128 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATET 226 W++P++ P PP TP+ + P PSAP T + Sbjct: 170 WVRPFLPPPKPP---TPLPQPLSPQPSAPLTSS 199
>GAG_MLVAV (P03336) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30; Nucleoprotein p10] Length = 536 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +2 Query: 128 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATETDPR 235 W+KP+V P L P P+ PS P+T+ PR Sbjct: 95 WVKPFVSPKLSPSPTAPI------LPSGPSTQPPPR 124
>GAG_FSVMD (P03340) Gag polyprotein [Contains: Core protein p15; Core protein| p12; Core protein p30; Core protein p10] Length = 536 Score = 30.0 bits (66), Expect = 2.9 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +2 Query: 128 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATET 226 W++P++ P PP TP+ + P PSAP T + Sbjct: 173 WVRPFLPPPKPP---TPLPQPLSPQPSAPPTSS 202
>ZMPB_STRPN (Q9L7Q2) Zinc metalloprotease zmpB precursor (EC 3.4.24.-)| Length = 1906 Score = 30.0 bits (66), Expect = 2.9 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Frame = -1 Query: 130 PAAAVARSPSVRPSVRPARSLS---AGESCLPGDKHKPPIRPEEK 5 P VA P +PS +PA AGE P + K P+ PE++ Sbjct: 256 PEEKVAVKPESQPSDKPAEESKVEQAGEPVAPREDEKAPVEPEKQ 300
>IL2RA_PIG (O02733) Interleukin-2 receptor alpha chain precursor (IL-2| receptor alpha subunit) (IL-2-RA) (IL2-RA) (CD25 antigen) Length = 270 Score = 30.0 bits (66), Expect = 2.9 Identities = 15/57 (26%), Positives = 25/57 (43%) Frame = +3 Query: 42 PGRQLSPAESERAGRTDGRTDGERATAAAGSSHGWCRTYHLQPSPPWEDEGIRPLLH 212 P +Q++P E+ R T G+ + G C+ PPWE E ++ + H Sbjct: 91 PVKQVTPRPEEQKERKTTETQGQMQPPNQANLPGHCKE-----PPPWEHESLKRVYH 142
>HXA1_RAT (O08656) Homeobox protein Hox-A1| Length = 333 Score = 30.0 bits (66), Expect = 2.9 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%) Frame = +1 Query: 130 DQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASSAGM--KSSTAAPSKGK 303 D+ +GG G +SPH H H P PA ++T+ + G+ S+ PS G Sbjct: 51 DRFLGGRGVQITSPHHH----------HHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGA 100 Query: 304 AAFELKHKLVQALNKIAD 357 F + LN+ AD Sbjct: 101 QNFSAPYG-PYGLNQEAD 117
>GAG_MLVAB (P03333) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30] Length = 234 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +2 Query: 128 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATETDP 232 W+KP+V P PPP PPSAP+ +P Sbjct: 95 WVKPFVHPKPPPPL----------PPSAPSLPLEP 119
>GAG_FRSFV (P03331) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12] Length = 186 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +2 Query: 128 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATETDPR 235 W+KP+V P L P P+ PS P+T+ PR Sbjct: 95 WVKPFVSPKLSPSPTAPI------LPSGPSTQPPPR 124
>RXRB_MOUSE (P28704) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)| (MHC class I regulatory element-binding protein H-2RIIBP) Length = 520 Score = 30.0 bits (66), Expect = 2.9 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = -1 Query: 220 SGWCRRGRMPSSSHGGEGWRW*VRHHPWLDPAAAVA 113 +G C + H G RW R PWLDPAAA A Sbjct: 16 AGQCGPVGVRKEMHCGVASRW-RRRRPWLDPAAAAA 50
>Y4MM_RHISN (P55572) Hypothetical protein y4mM precursor| Length = 541 Score = 30.0 bits (66), Expect = 2.9 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = -1 Query: 178 GGEGWRW*VRHHPWLDPAAAVARSPSVRPSVRPAR---SLSAGESCLPGD 38 GGE ++ + +L ++AV +P++ VRPAR +L+ G PG+ Sbjct: 20 GGETMKYEITRRRFLAASSAVLAAPAIVTMVRPARAGTTLTLGHGAAPGN 69
>RXRB_HUMAN (P28702) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)| Length = 533 Score = 30.0 bits (66), Expect = 2.9 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = -1 Query: 220 SGWCRRGRMPSSSHGGEGWRW*VRHHPWLDPAAAVA 113 +G C + H G RW R PWLDPAAA A Sbjct: 16 AGQCGPVGVRKEMHCGVASRW-RRRRPWLDPAAAAA 50
>GAG_FLV (P10262) Gag polyprotein [Contains: Core protein p15; Core protein| p12; Core protein p30; Core protein p10] Length = 580 Score = 30.0 bits (66), Expect = 2.9 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +2 Query: 128 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATET 226 W++P++ P PP TP+ + P PSAP T + Sbjct: 170 WVRPFLPPPKPP---TPLPQPLSPQPSAPLTSS 199
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 29.6 bits (65), Expect = 3.8 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = +1 Query: 100 RTESAPPPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASSAGMKSS 279 R +PPPP + + P SP P + ++ +P S PP + R + S K Sbjct: 552 RRSPSPPPPPRRRRSPSLPRRRSPSPPPRRRSPSPRRYS-----PPIQRRYSPSPPPKRR 606 Query: 280 TAAP 291 TA+P Sbjct: 607 TASP 610
>MUTL_VIBVY (Q7MH01) DNA mismatch repair protein mutL| Length = 664 Score = 29.6 bits (65), Expect = 3.8 Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 4/110 (3%) Frame = +1 Query: 7 SPLGG--SEACACPQXXXXXXXXXXXXXXXTDGRTESAPPPPLDQAMGGAGPTTSSPHPH 180 +PLG +E+ PQ + P PL+ + +P PH Sbjct: 354 APLGSFPAESNEVPQAVYHAIEKAPAYPRKAGQEQQLQPVAPLESSFSSEQGREVAPAPH 413 Query: 181 GKMKASAPFCTSH*DRPPPARHRTASSAGMKSSTAAPSKG--KAAFELKH 324 + A + PARH T+S+ + APSK KA EL H Sbjct: 414 NERNAWM-------ESRSPARHTTSSNQSERYGEPAPSKQQVKAYAELLH 456
>SAM68_CHICK (Q8UUW7) KH domain-containing, RNA-binding, signal| transduction-associated protein 1 (Src-associated in mitosis 68 kDa protein) (Sam68) Length = 433 Score = 29.6 bits (65), Expect = 3.8 Identities = 14/36 (38%), Positives = 16/36 (44%) Frame = +1 Query: 97 GRTESAPPPPLDQAMGGAGPTTSSPHPHGKMKASAP 204 GR + PPPP G GP P P G + AP Sbjct: 273 GRGAAPPPPPPVPRGRGVGPPPPPPPPRGALVRGAP 308
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 29.6 bits (65), Expect = 3.8 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = +1 Query: 115 PPPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARH---RTASSAGMKS 276 PPPP+ G+G +P P + + P PPP RH T +SAG S Sbjct: 326 PPPPMRTTTEGSGVRLPAPPPPPRRGPAPP--------PPPHRHVTSNTLNSAGGNS 374
>AFSK_STRCO (P54741) Serine/threonine protein kinase afsK (EC 2.7.11.1)| Length = 799 Score = 29.6 bits (65), Expect = 3.8 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Frame = +3 Query: 81 GRTDGRTDGERATAAAGSSHGWCRT-----YHLQPSPPWEDEGIRPLLHQPLRPTPASSS 245 GR +GR + AT A G HG + H P PP P H P+ P P + Sbjct: 294 GRRNGRPAVKPATTAGGRGHGHGPSGARAPVHAPPLPP-------PPAHDPVVPAPPAHV 346 Query: 246 P 248 P Sbjct: 347 P 347
>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-like protein) (Atrophin-1-related protein) Length = 1566 Score = 29.3 bits (64), Expect = 4.9 Identities = 27/103 (26%), Positives = 35/103 (33%), Gaps = 8/103 (7%) Frame = +1 Query: 7 SPLGGSEACACPQXXXXXXXXXXXXXXXTDGRTESAPPPPLDQAMGGAGPTTSSP----- 171 +PLG S A A P R + PP PL PTT P Sbjct: 883 APLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAP 942 Query: 172 --HPH-GKMKASAPFCTSH*DRPPPARHRTASSAGMKSSTAAP 291 H H + +PF + PPPA +S + +A P Sbjct: 943 QAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHP 985
>LITAF_BRARE (Q6GMG8) Lipopolysaccharide-induced tumor necrosis factor-alpha| factor homolog (LPS-induced TNF-alpha factor homolog) Length = 163 Score = 29.3 bits (64), Expect = 4.9 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Frame = +1 Query: 115 PPPPLDQAMGGAGP-TTSSPHPHGKMKASAP 204 PPPP + GA P + P+P MKAS P Sbjct: 20 PPPPSYDEISGANPYYPAGPYPPADMKASGP 50
>IFD2_CAEEL (Q19782) Intermediate filament protein ifd-2 (Intermediate filament| protein D2) (IF-D2) (Cel IF D2) Length = 443 Score = 29.3 bits (64), Expect = 4.9 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +1 Query: 103 TESAPPPPLDQAMGGAGPTTSSPHPHG 183 T +APPPPL Q +GP T+S H +G Sbjct: 413 TYNAPPPPLPQ----SGPRTTSYHAYG 435
>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)| Length = 851 Score = 28.9 bits (63), Expect = 6.4 Identities = 17/48 (35%), Positives = 19/48 (39%) Frame = +1 Query: 118 PPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASS 261 PPP A+GGA P S P P S +R PP R S Sbjct: 802 PPPAGSALGGAPPVPSRPGASPDPFGPPPQVPSRPNRAPPGVPRITIS 849
>GAG_MSVMO (P03334) Gag polyprotein R65 [Contains: Core protein p15; Inner| coat protein p12; Core shell protein p30; Nucleoprotein p10] Length = 537 Score = 28.9 bits (63), Expect = 6.4 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +2 Query: 128 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATETDP 232 W+KP+V P PPP L PSAP+ +P Sbjct: 95 WVKPFVHPKPPPPLL----------PSAPSLPLEP 119
>WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 501 Score = 28.9 bits (63), Expect = 6.4 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Frame = +1 Query: 100 RTESAPPPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTA-SSAGMKS 276 R ++ PPPP + GG P PH G PPPAR R A ++ Sbjct: 270 RRQAPPPPP--PSRGGPPPPPPPPHSSG-------------PPPPPARGRGAPPPPPSRA 314 Query: 277 STAAP 291 TAAP Sbjct: 315 PTAAP 319
>WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 501 Score = 28.9 bits (63), Expect = 6.4 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Frame = +1 Query: 100 RTESAPPPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTA-SSAGMKS 276 R ++ PPPP + GG P PH G PPPAR R A ++ Sbjct: 270 RRQAPPPPP--PSRGGPPPPPPPPHSSG-------------PPPPPARGRGAPPPPPSRA 314 Query: 277 STAAP 291 TAAP Sbjct: 315 PTAAP 319
>UCP8_SCHPO (O94685) UBA domain-containing protein 8| Length = 884 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = +2 Query: 131 IKPWVVPDLPPPALTPMGR*RHPPPSAPATETDP 232 IKP V P P PA TP + HPPP + P Sbjct: 723 IKPQVTPAPPTPAPTPAVK-HHPPPPPVRSSISP 755
>TAF6_RAT (Q63801) Transcription initiation factor TFIID subunit 6| (Transcription initiation factor TFIID 70 kDa subunit) (TAF(II)70) (TAFII-70) (TAFII-80) (TAFII80) (p80) Length = 678 Score = 28.9 bits (63), Expect = 6.4 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 1/60 (1%) Frame = +1 Query: 1 SPSPLGGSEACACPQXXXXXXXXXXXXXXXTDGRTESAPPPPLDQAMGGAGPT-TSSPHP 177 SPSPLGGS C Q +S PP P G+ PT SSP P Sbjct: 634 SPSPLGGSALCGGKQETG-----------------DSPPPAPGTPKANGSQPTGPSSPQP 676
>SCW1_SCHPO (O74452) Cell wall integrity protein scw1 (Strong cell wall protein| 1) Length = 561 Score = 28.9 bits (63), Expect = 6.4 Identities = 18/62 (29%), Positives = 29/62 (46%) Frame = +1 Query: 157 TTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASSAGMKSSTAAPSKGKAAFELKHKLVQ 336 + SPHP A++ F T+ PPP T+ +ST +PS +A+ H + Q Sbjct: 351 SAQSPHPR-VFSANSAFSTTS---PPPLTPSTSRDYPFSASTISPSTPFSAYSSSHGIHQ 406 Query: 337 AL 342 + Sbjct: 407 RI 408
>POL2_RRVS (P36324) RNA2 polyprotein (P2) [Contains: P2A protein (2A);| Movement protein (2B-MP); Coat protein (2C-CP)] Length = 1107 Score = 28.9 bits (63), Expect = 6.4 Identities = 29/87 (33%), Positives = 32/87 (36%), Gaps = 19/87 (21%) Frame = +3 Query: 3 SFSSGRIGGLCLSPGRQLSPAESERAGRTDGRTDGERATAAAGSSH----GWCRTYHLQ- 167 SF R GG+ QL AESE A R ER A A + G C Y Sbjct: 54 SFELPRFGGVTPGVMEQLRDAESELA-EAKQRLLRERLHAVANRQNIPYLGDCMYYDAPG 112 Query: 168 --------------PSPPWEDEGIRPL 206 P+P WE E IRPL Sbjct: 113 ISQEELLQAAFLEAPTPAWEHERIRPL 139
>GAG_MSVMT (P32594) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30] Length = 467 Score = 28.9 bits (63), Expect = 6.4 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +2 Query: 128 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATETDP 232 W+KP+V P PPP L PSAP+ +P Sbjct: 95 WVKPFVHPKPPPPLL----------PSAPSLPLEP 119
>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5| (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f) Length = 361 Score = 28.9 bits (63), Expect = 6.4 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Frame = +1 Query: 103 TESAPPPPLDQAMGGAGPTTSSPHP---HGKMKASAPFCTSH*DRPPPARHRTASSAGMK 273 T +A P P+ A + PT S+P P + AP + P A +T +SA Sbjct: 14 TAAAAPAPVVTAAPASAPTPSTPAPTPAATPAASPAPVSSDPAVAAPAAPGQTPASAPAP 73 Query: 274 SSTAAPSK 297 + T APS+ Sbjct: 74 AQTPAPSQ 81
>IE18_PRVIF (P11675) Immediate-early protein IE180| Length = 1461 Score = 28.9 bits (63), Expect = 6.4 Identities = 22/66 (33%), Positives = 26/66 (39%) Frame = +3 Query: 6 FSSGRIGGLCLSPGRQLSPAESERAGRTDGRTDGERATAAAGSSHGWCRTYHLQPSPPWE 185 FSS GG LSPA S A R +A+ SS + S E Sbjct: 354 FSSSSSGG----SDSDLSPARSPSAPRAPAAAAAAARRSASSSSSSSSSSSSSSSSEGEE 409 Query: 186 DEGIRP 203 DEG+RP Sbjct: 410 DEGVRP 415
>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional| activator IE175) (Alpha-4 protein) Length = 1298 Score = 28.9 bits (63), Expect = 6.4 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +1 Query: 112 APPPPLDQAMGGAGPTTSSPHPHG 183 A P P QA G G +PHPHG Sbjct: 873 AGPAPAAQAACGGGDDDDNPHPHG 896
>F100A_MOUSE (Q6P3B2) Protein FAM100A| Length = 176 Score = 28.9 bits (63), Expect = 6.4 Identities = 21/63 (33%), Positives = 25/63 (39%) Frame = +1 Query: 112 APPPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASSAGMKSSTAAP 291 A PP A+ +S HG +S+P TS PP H T S A TAA Sbjct: 69 ATPPNFPDALTMFSRLKASESFHGGGGSSSPMATSATSPPPHFPHATGSFATPSWPTAAS 128 Query: 292 SKG 300 G Sbjct: 129 PPG 131
>PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subunit-like protein| ST- Length = 1019 Score = 28.9 bits (63), Expect = 6.4 Identities = 18/36 (50%), Positives = 18/36 (50%), Gaps = 4/36 (11%) Frame = +3 Query: 177 PWEDEGIRP-LLHQPLRPTPASSS---PHRFFRRDE 272 PW DEG RP HQ L P P S PHR R E Sbjct: 959 PWLDEGHRPEAPHQSLHPGPGDPSEQHPHRPNRATE 994
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 28.9 bits (63), Expect = 6.4 Identities = 14/32 (43%), Positives = 15/32 (46%) Frame = +1 Query: 109 SAPPPPLDQAMGGAGPTTSSPHPHGKMKASAP 204 + PPPP A GG P PH HG K P Sbjct: 611 ATPPPPPQGAAGGGYP--MPPHMHGGYKMGGP 640
>BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dependent| helicase brm) (Protein brahma) Length = 1638 Score = 28.9 bits (63), Expect = 6.4 Identities = 18/66 (27%), Positives = 25/66 (37%) Frame = +1 Query: 106 ESAPPPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASSAGMKSSTA 285 + P PP +GG P P + + S P PPP H+ G K + Sbjct: 287 QGQPLPPQPPQVGGPPPIQQQQPPQQQQQQSQP--------PPPEPHQHQLPNGGKPLSM 338 Query: 286 APSKGK 303 PS G+ Sbjct: 339 GPSGGQ 344
>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 505 Score = 28.9 bits (63), Expect = 6.4 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Frame = +1 Query: 100 RTESAPPPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTA-SSAGMKS 276 R ++ PPPP + GG P PH G PPPAR R A ++ Sbjct: 273 RRQAPPPPP--PSRGGPPPPPPPPHSSG-------------PPPPPARGRGAPPPPPSRA 317 Query: 277 STAAP 291 TAAP Sbjct: 318 PTAAP 322
>PO2F1_MOUSE (P25425) POU domain, class 2, transcription factor 1| (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1) Length = 770 Score = 25.0 bits (53), Expect(2) = 7.9 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Frame = -3 Query: 443 QERKGPTMSGARASTVVWSSL-RPIW*VSLSAILLRAWTSLCLSSNAALPLDGAAVLDFI 267 ++R P SG +S+ + + P V+ + L+ + T+ L+ N LPL AAV + Sbjct: 437 EKRINPPSSGGTSSSPIKAIFPSPASLVATTPSLVTSSTATTLTVNPVLPLTSAAVTNLS 496 Query: 266 PAEEAVR 246 ++ +R Sbjct: 497 LTDQDLR 503 Score = 21.9 bits (45), Expect(2) = 7.9 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -1 Query: 130 PAAAVARSPSVRPSVRPARSLSAGES 53 PA++ SPS+ PS P+ S S E+ Sbjct: 542 PASSAVTSPSLSPS--PSASASTSEA 565
>KCND3_RAT (Q62897) Potassium voltage-gated channel subfamily D member 3| (Voltage-gated potassium channel subunit Kv4.3) Length = 655 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +2 Query: 161 PPALTPMGR*RHPPPSAPATETD 229 PPALTP G R PPP++P T+ Sbjct: 620 PPALTPEGESR-PPPASPGPNTN 641
>KCND3_RABIT (Q9TTT5) Potassium voltage-gated channel subfamily D member 3| (Voltage-gated potassium channel subunit Kv4.3) Length = 655 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +2 Query: 161 PPALTPMGR*RHPPPSAPATETD 229 PPALTP G R PPP++P T+ Sbjct: 620 PPALTPEGETR-PPPASPGPNTN 641
>KCND3_MOUSE (Q9Z0V1) Potassium voltage-gated channel subfamily D member 3| (Voltage-gated potassium channel subunit Kv4.3) Length = 655 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +2 Query: 161 PPALTPMGR*RHPPPSAPATETD 229 PPALTP G R PPP++P T+ Sbjct: 620 PPALTPEGESR-PPPASPGPNTN 641
>KCND3_HUMAN (Q9UK17) Potassium voltage-gated channel subfamily D member 3| (Voltage-gated potassium channel subunit Kv4.3) Length = 655 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +2 Query: 161 PPALTPMGR*RHPPPSAPATETD 229 PPALTP G R PPP++P T+ Sbjct: 620 PPALTPEGESR-PPPASPGPNTN 641
>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)| Length = 867 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/40 (37%), Positives = 17/40 (42%) Frame = +1 Query: 118 PPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPP 237 PPP A+GGA P S P P S +R PP Sbjct: 802 PPPAGSALGGAPPVPSRPGASPDPFGPPPQVPSRPNRAPP 841
>SWC4_ASPFU (Q4WNY4) SWR1-complex protein 4| Length = 588 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = +1 Query: 151 GPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASSAGMKSSTAAPSK 297 GP ++P P G+ S ++ R H +A + K STAA +K Sbjct: 344 GPEAAAPSPAGQTPTSNAPTSARDSRADTPSHASAGPSSKKGSTAAAAK 392
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 11/72 (15%) Frame = +1 Query: 97 GRTESAPPPPLDQAMGGAGPTTSSPH-----PHGKMKASAPFCTSH*DRPPP------AR 243 G+ P P MG G PH P G + AP+ H PPP Sbjct: 202 GKMPGGPKPGGGPGMGAPGGHPKPPHRGGGEPRGGRQHHAPYHQQHHQGPPPGGPGPRTE 261 Query: 244 HRTASSAGMKSS 279 + + S G K++ Sbjct: 262 EKISDSEGFKAN 273
>SET1A_HUMAN (O15047) Histone-lysine N-methyltransferase, H3 lysine-4 specific| SET1 (EC 2.1.1.43) (Set1/Ash2 histone methyltransferase complex subunit SET1) (SET-domain-containing protein 1A) Length = 1707 Score = 28.5 bits (62), Expect = 8.4 Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 1/66 (1%) Frame = +1 Query: 97 GRTESAPPP-PLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASSAGMK 273 G TE +PP PL AGP +P P + + P PPP + R S Sbjct: 1120 GPTEESPPSAPLRPPEPPAGPPAPAPRPDERPSSPIPLL------PPPKKRRKTVSFSAI 1173 Query: 274 SSTAAP 291 AP Sbjct: 1174 EVVPAP 1179
>FREA_HUMAN (O43638) Forkhead-related transcription factor 10 (FREAC-10)| (Forkhead-like 18 protein) Length = 330 Score = 28.5 bits (62), Expect = 8.4 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +1 Query: 121 PPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH 219 P L+ + A P+ + P P G ++A P T H Sbjct: 263 PGLEHLLASAAPSPAPPTPPGSLRAPLPLPTDH 295
>SWR1_ASPFU (Q4WAS9) Helicase swr1 (EC 3.6.1.-)| Length = 1695 Score = 28.5 bits (62), Expect = 8.4 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Frame = +3 Query: 3 SFSSGRIGGLCLSPGRQLSPAESERAG----RTDGRTDGERATAAAGSSHGWCRTYHLQP 170 S ++ +G S R+L P+ES+ G +G R A +S R+ P Sbjct: 25 SLNTSALGDSPDSANRELIPSESKENGVPTDSIEGPPSKRRKLAGPDNSR---RSTPRPP 81 Query: 171 SPPWEDEGI 197 SPPW+ G+ Sbjct: 82 SPPWKKAGV 90
>HLX1_MOUSE (Q61670) Homeobox protein HLX1| Length = 476 Score = 28.5 bits (62), Expect = 8.4 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = +3 Query: 60 PAESERAGRTDGRTDGERATAAAGSSHGWCRTYHLQPSPPWEDEGIRPLLHQ 215 PAE ER R+ R++GE + ++ S + + PS EG LHQ Sbjct: 353 PAEGEREERSPSRSEGEAESESSDS-----ESLDMAPSDTERTEGTERSLHQ 399
>ZYX_MOUSE (Q62523) Zyxin| Length = 564 Score = 28.5 bits (62), Expect = 8.4 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +1 Query: 112 APPPPLDQAMGGAGPTTSSPHPHGKM 189 +PPPPL++ G PT P P K+ Sbjct: 117 SPPPPLEEEGGPEAPTQLPPQPREKV 142
>DHSA_MACFA (Q8HXW3) Succinate dehydrogenase [ubiquinone] flavoprotein subunit,| mitochondrial precursor (EC 1.3.5.1) (Fp) (Flavoprotein subunit of complex II) Length = 664 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/26 (57%), Positives = 17/26 (65%) Frame = -1 Query: 79 ARSLSAGESCLPGDKHKPPIRPEEKE 2 A +LS ESC PGDK PPI+P E Sbjct: 466 ACALSIEESCRPGDK-VPPIKPNAGE 490
>DHSA_HUMAN (P31040) Succinate dehydrogenase [ubiquinone] flavoprotein subunit,| mitochondrial precursor (EC 1.3.5.1) (Fp) (Flavoprotein subunit of complex II) Length = 664 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/26 (57%), Positives = 17/26 (65%) Frame = -1 Query: 79 ARSLSAGESCLPGDKHKPPIRPEEKE 2 A +LS ESC PGDK PPI+P E Sbjct: 466 ACALSIEESCRPGDK-VPPIKPNAGE 490
>ZDHC8_PANTR (Q2THX0) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 8) (DHHC-8) Length = 765 Score = 28.5 bits (62), Expect = 8.4 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%) Frame = +1 Query: 151 GPTTSSPHPHGKMKASAPFCTSH*DRP----PPARHRTASSAGMKSSTAAPSKGKAAFEL 318 GP + HPHG +A+A D P PP++ S + A G +A Sbjct: 687 GPQSCRLHPHGPPRATA-LADRAEDHPQLKTPPSKLNGQSPGLARLGLATGPPGPSASPT 745 Query: 319 KHKLVQALNKIADRDTYQIGL 381 +H LV+ ++ + TY+I + Sbjct: 746 RHTLVKKVSGVGG-TTYEISV 765
>PCD16_HUMAN (Q96JQ0) Protocadherin-16 precursor (Dachsous 1) (Cadherin-19)| (Fibroblast cadherin 1) Length = 3298 Score = 28.5 bits (62), Expect = 8.4 Identities = 21/59 (35%), Positives = 25/59 (42%) Frame = +1 Query: 118 PPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASSAGMKSSTAAPS 294 PPPL A+ G + P P A A F PPA HR+ S S+AA S Sbjct: 3201 PPPLITAVAHPGAKSVPPKPANTAAARAIF--------PPASHRSPISHEGSLSSAAMS 3251
>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein| Length = 1509 Score = 28.5 bits (62), Expect = 8.4 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%) Frame = +1 Query: 94 DGRTESAPPPPLDQA--MGGAGPTTSSPHPHGKMKASAPFCTS-H*DRP---PPARHRTA 255 D + AP P + A + G GP++S PH +P S H RP PP+R ++ Sbjct: 700 DSQASPAPAPQIPAAAPLKGPGPSSSPSLPHQAPLGDSPHLPSPHPTRPPSRPPSRPQSV 759 Query: 256 S 258 S Sbjct: 760 S 760
>GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains: Matrix| protein p15; RNA-binding phosphoprotein p12; Capsid protein p30; Nucleocapsid protein p10] Length = 538 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +2 Query: 128 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATETDP 232 W+KP+V P PPP L PPSAP+ +P Sbjct: 95 WVKPFVHPK-PPPLLL--------PPSAPSLPPEP 120
>WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1)| (Protein kinase with no lysine 1) (Protein kinase, lysine-deficient 1) (Kinase deficient protein) Length = 2382 Score = 28.5 bits (62), Expect = 8.4 Identities = 23/91 (25%), Positives = 36/91 (39%) Frame = +1 Query: 112 APPPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTASSAGMKSSTAAP 291 A P +QA+ G P+T S P + PPPAR + Sbjct: 139 AAAAPGEQAVAGPAPSTVPSSTSKDRPVSQPSLVGSKEEPPPAR--------------SG 184 Query: 292 SKGKAAFELKHKLVQALNKIADRDTYQIGLS 384 S G +A E + + Q + I + +T +G+S Sbjct: 185 SGGGSAKEPQEERSQQQDDIEELETKAVGMS 215
>TAF6_HUMAN (P49848) Transcription initiation factor TFIID subunit 6| (Transcription initiation factor TFIID 70 kDa subunit) (TAF(II)70) (TAFII-70) (TAFII-80) (TAFII80) Length = 677 Score = 28.5 bits (62), Expect = 8.4 Identities = 18/59 (30%), Positives = 21/59 (35%) Frame = +1 Query: 1 SPSPLGGSEACACPQXXXXXXXXXXXXXXXTDGRTESAPPPPLDQAMGGAGPTTSSPHP 177 SPSPL GS C Q +S PP P G+ P + SP P Sbjct: 634 SPSPLSGSALCGGKQEAG-----------------DSPPPAPGTPKANGSQPNSGSPQP 675
>SYL_AGRT5 (Q8UBV2) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 876 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/50 (28%), Positives = 27/50 (54%) Frame = +1 Query: 265 GMKSSTAAPSKGKAAFELKHKLVQALNKIADRDTYQIGLSELQTTVDALA 414 G+K A +G AA + HK ++A+ + D+ + ++ + V+ALA Sbjct: 699 GVKPKPATEGEGLAASKAAHKTLKAVQEDLDKLAFNKAIARIYELVNALA 748
>WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 505 Score = 28.5 bits (62), Expect = 8.4 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Frame = +1 Query: 100 RTESAPPPPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH*DRPPPARHRTA-SSAGMKS 276 R ++ PPPP + GG P PH G PPPAR R A ++ Sbjct: 273 RRQAPPPPP--PSRGGPPPPPPPPHNSG-------------PPPPPARGRGAPPPPPSRA 317 Query: 277 STAAP 291 TAAP Sbjct: 318 PTAAP 322 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.130 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,610,413 Number of Sequences: 219361 Number of extensions: 1444013 Number of successful extensions: 7514 Number of sequences better than 10.0: 87 Number of HSP's better than 10.0 without gapping: 6055 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7386 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
