Clone Name | bastl07a08 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 292 tccaagggcaaggcggcgttcgagctcaagcacaagctcgtccaagccctcaacaagatc 351 ||||| |||||||| | ||||||||| ||||||| ||| ||||| ||| |||||||||| Sbjct: 21951910 tccaaaggcaaggccgtgttcgagctgaagcacaggctggtccaggccatcaacaagatt 21951851 Query: 352 gccgacagggacacctaccagat 374 || |||||||||||||||||||| Sbjct: 21951850 gcagacagggacacctaccagat 21951828 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 gcgcgccaccgccgccgctg 129 |||||||||||||||||||| Sbjct: 12574466 gcgcgccaccgccgccgctg 12574447
>dbj|AP005090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1065_E04 Length = 115865 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 292 tccaagggcaaggcggcgttcgagctcaagcacaagctcgtccaagccctcaacaagatc 351 ||||| |||||||| | ||||||||| ||||||| ||| ||||| ||| |||||||||| Sbjct: 82627 tccaaaggcaaggccgtgttcgagctgaagcacaggctggtccaggccatcaacaagatt 82568 Query: 352 gccgacagggacacctaccagat 374 || |||||||||||||||||||| Sbjct: 82567 gcagacagggacacctaccagat 82545
>dbj|AK073825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068E01, full insert sequence Length = 3036 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 292 tccaagggcaaggcggcgttcgagctcaagcacaagctcgtccaagccctcaacaagatc 351 ||||| |||||||| | ||||||||| ||||||| ||| ||||| ||| |||||||||| Sbjct: 282 tccaaaggcaaggccgtgttcgagctgaagcacaggctggtccaggccatcaacaagatt 341 Query: 352 gccgacagggacacctaccagat 374 || |||||||||||||||||||| Sbjct: 342 gcagacagggacacctaccagat 364
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Minus Query: 243 tcaccgcaccgcttcttccgccg 265 ||||||||||||||||||||||| Sbjct: 26004170 tcaccgcaccgcttcttccgccg 26004148
>dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1226_A12 Length = 113025 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Minus Query: 243 tcaccgcaccgcttcttccgccg 265 ||||||||||||||||||||||| Sbjct: 42028 tcaccgcaccgcttcttccgccg 42006
>ref|XM_744563.1| Aspergillus fumigatus Af293 salicylate hydroxylase (Afu2g05260) partial mRNA Length = 1323 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 206 tctgcaccagccactgagaccg 227 |||||||||||||||||||||| Sbjct: 1135 tctgcaccagccactgagaccg 1114
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 393 aaccaccgtcgacgccctggcc 414 |||||||||||||||||||||| Sbjct: 150638 aaccaccgtcgacgccctggcc 150617
>gb|AC026202.7| Homo sapiens chromosome 3 clone RP11-572B2 map 3p, complete sequence Length = 204248 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 tgcttgtccccaggcaggcag 53 ||||||||||||||||||||| Sbjct: 80313 tgcttgtccccaggcaggcag 80333
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 396 caccgtcgacgccctggccccggac 420 |||||||| |||||||||||||||| Sbjct: 196991 caccgtcgccgccctggccccggac 197015
>gb|AC026203.3|AC026203 Homo sapiens chromosome 3 clone RP11-586C2 map 3p, complete sequence Length = 181164 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 tgcttgtccccaggcaggcag 53 ||||||||||||||||||||| Sbjct: 80866 tgcttgtccccaggcaggcag 80886
>gb|AC026164.5|AC026164 Homo sapiens chromosome 3 clone RP11-116K5 map 3p, complete sequence Length = 155769 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 tgcttgtccccaggcaggcag 53 ||||||||||||||||||||| Sbjct: 37529 tgcttgtccccaggcaggcag 37549
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 tccagcacggccgccccgtcc 294 ||||||||||||||||||||| Sbjct: 3254741 tccagcacggccgccccgtcc 3254761
>ref|NM_126999.1| Arabidopsis thaliana unknown protein AT2G14340 mRNA, complete cds Length = 663 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 424 gtcggccccttcctctcctgcgtc 447 |||||| ||||||||||||||||| Sbjct: 36 gtcggcgccttcctctcctgcgtc 59
>gb|DQ214103.1| Taeniopygia guttata clone 0061P0019G02 RIKEN cDNA 2610002I17 gene-like mRNA, complete sequence Length = 1449 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 ggatgaagtccagcacggcc 285 |||||||||||||||||||| Sbjct: 480 ggatgaagtccagcacggcc 461
>ref|XM_450747.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1992 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 gcgcgccaccgccgccgctg 129 |||||||||||||||||||| Sbjct: 966 gcgcgccaccgccgccgctg 947
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 gcgcgccaccgccgccgctg 129 |||||||||||||||||||| Sbjct: 1132047 gcgcgccaccgccgccgctg 1132028
>ref|XM_955003.1| Neurospora crassa OR74A hypothetical protein (NCU05836.1) partial mRNA Length = 1776 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 tcgagctcaagcacaagctc 330 |||||||||||||||||||| Sbjct: 233 tcgagctcaagcacaagctc 252
>ref|XM_325690.1| Neurospora crassa OR74A hypothetical protein (NCU05836.1) partial mRNA Length = 1776 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 tcgagctcaagcacaagctc 330 |||||||||||||||||||| Sbjct: 233 tcgagctcaagcacaagctc 252
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 gagcgcgccaccgccgccgc 127 |||||||||||||||||||| Sbjct: 6992682 gagcgcgccaccgccgccgc 6992701
>gb|AC009992.7|ATAC009992 Arabidopsis thaliana chromosome III BAC T4P3 genomic sequence, complete sequence Length = 96583 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 424 gtcggccccttcctctcctgcgtc 447 |||||| ||||||||||||||||| Sbjct: 25335 gtcggcgccttcctctcctgcgtc 25312
>gb|DQ446811.1| Arabidopsis thaliana clone pENTR221-At4g09400 hypothetical protein (At4g09400) mRNA, complete cds Length = 630 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 424 gtcggccccttcctctcctgcgtc 447 |||||| ||||||||||||||||| Sbjct: 3 gtcggcgccttcctctcctgcgtc 26
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 caaaccaccgtcgacgccctggcc 414 |||||||||| ||||||||||||| Sbjct: 256526 caaaccaccggcgacgccctggcc 256549
>emb|AL161514.2|ATCHRIV26 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 26 Length = 199754 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 424 gtcggccccttcctctcctgcgtc 447 |||||| ||||||||||||||||| Sbjct: 166401 gtcggcgccttcctctcctgcgtc 166378
>gb|AC103891.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1175C11, complete sequence Length = 123620 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gagcgcgccaccgccgccgc 127 |||||||||||||||||||| Sbjct: 89683 gagcgcgccaccgccgccgc 89664
>gb|AC006304.4| Arabidopsis thaliana chromosome 2 clone T1O16 map mi398, complete sequence Length = 89281 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 424 gtcggccccttcctctcctgcgtc 447 |||||| ||||||||||||||||| Sbjct: 37919 gtcggcgccttcctctcctgcgtc 37896
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cccccgccagctcgtcaccg 248 |||||||||||||||||||| Sbjct: 2286447 cccccgccagctcgtcaccg 2286466
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 gagcgcgccaccgccgccgc 127 |||||||||||||||||||| Sbjct: 6990577 gagcgcgccaccgccgccgc 6990596
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 accaccgtcgacgccctggc 413 |||||||||||||||||||| Sbjct: 3753713 accaccgtcgacgccctggc 3753732
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 cgccggcggagagcgagcgg 77 |||||||||||||||||||| Sbjct: 4754787 cgccggcggagagcgagcgg 4754806 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 cggccgccccgtccaagggcaagg 304 ||||||||||| |||||||||||| Sbjct: 1894999 cggccgccccggccaagggcaagg 1895022
>gb|AC135157.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1017C11, complete sequence Length = 166072 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 gagcgcgccaccgccgccgc 127 |||||||||||||||||||| Sbjct: 159279 gagcgcgccaccgccgccgc 159298
>dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0545E05 Length = 163229 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gagcgcgccaccgccgccgc 127 |||||||||||||||||||| Sbjct: 134271 gagcgcgccaccgccgccgc 134252
>dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0041C07 Length = 179047 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 gcgcgccaccgccgccgctg 129 |||||||||||||||||||| Sbjct: 40404 gcgcgccaccgccgccgctg 40385
>dbj|AP005637.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0711A01 Length = 162400 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 gcgcgccaccgccgccgctg 129 |||||||||||||||||||| Sbjct: 89793 gcgcgccaccgccgccgctg 89774
>dbj|AK110980.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-C08, full insert sequence Length = 1456 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 gagcgcgccaccgccgccgc 127 |||||||||||||||||||| Sbjct: 242 gagcgcgccaccgccgccgc 261
>dbj|AK105781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G04, full insert sequence Length = 1415 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gagcgcgccaccgccgccgc 127 |||||||||||||||||||| Sbjct: 730 gagcgcgccaccgccgccgc 711
>dbj|AK100361.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083M02, full insert sequence Length = 1652 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gagcgcgccaccgccgccgc 127 |||||||||||||||||||| Sbjct: 720 gagcgcgccaccgccgccgc 701
>gb|AY620521.1| Saguinus labiatus Alu insertion locus Aotus_F9_Saguinus_16 sequence Length = 247 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 cctccagccctcacccccat 180 |||||||||||||||||||| Sbjct: 75 cctccagccctcacccccat 94
>dbj|AK066614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074N01, full insert sequence Length = 3250 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gagcgcgccaccgccgccgc 127 |||||||||||||||||||| Sbjct: 366 gagcgcgccaccgccgccgc 347
>gb|AC006567.1|AC006567 Arabidopsis thaliana BAC T15G18 from chromosome IV, near 25 cM, complete sequence Length = 113800 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 424 gtcggccccttcctctcctgcgtc 447 |||||| ||||||||||||||||| Sbjct: 97659 gtcggcgccttcctctcctgcgtc 97682 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,365,522 Number of Sequences: 3902068 Number of extensions: 3365522 Number of successful extensions: 88742 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87518 Number of HSP's gapped (non-prelim): 1224 length of query: 457 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 435 effective length of database: 17,147,199,772 effective search space: 7459031900820 effective search space used: 7459031900820 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)