>TF3C4_MOUSE (Q8BMQ2) General transcription factor 3C polypeptide 4 (EC|
           2.3.1.48) (Transcription factor IIIC-delta subunit)
           (TF3C-delta) (TFIIIC 90 kDa subunit) (TFIIIC 90)
          Length = 817

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 27/124 (21%)
 Frame = +1

Query: 166 DAITWSSDNLVAVASGHIVTILNPAA-LDGP-RGLVVLRPRDPFPIG-----------VV 306
           + ++WS D+ V+V++   V +L     +  P + LV+ R   P P+            V 
Sbjct: 64  EPLSWSEDHRVSVSTARSVAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKVGSKTEVA 123

Query: 307 NREDLFEPSLVPT-----SLARDTEPCARSV---------SWSQQGFAPNSGCLLAVCTV 444
             ++ F  S  PT      L R   P  +++         SWS  G   N  CLLA  T+
Sbjct: 124 ECKEKFASSKDPTISQTFMLDRMFNPEGKALPPMRGFKYTSWSPMGCDANGRCLLAALTM 183

Query: 445 DGHV 456
           D  +
Sbjct: 184 DNRL 187

>TTC16_MOUSE (Q8C1F5) Tetratricopeptide repeat protein 16 (TPR repeat protein|
           16)
          Length = 767

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
 Frame = -2

Query: 449 PSTVQTANKQPEXGANPCWDHETDRAHGSVSRAKDV---GTKLGSKRSSLLTTPMGKGSL 279
           PS   +  + PE G  P     T      + RAK V   G KL ++RSS   T     SL
Sbjct: 640 PSQSTSTTEAPE-GPRPSKSRSTLSVKERIRRAKAVRAQGWKLKAQRSSQKVTKTP--SL 696

Query: 278 GRSTTSPRGPSSAAGFRIVTMWPEATATKLSLDQVMAS 165
             STT      SA      T WP   A  LS  ++ ++
Sbjct: 697 THSTTHSDIGESANDTPGQTPWPSKAADSLSFSEISST 734

>CSPG2_HUMAN (P13611) Versican core protein precursor (Large fibroblast|
            proteoglycan) (Chondroitin sulfate proteoglycan core
            protein 2) (PG-M) (Glial hyaluronate-binding protein)
            (GHAP)
          Length = 3396

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 35/99 (35%), Positives = 43/99 (43%), Gaps = 17/99 (17%)
 Frame = +1

Query: 121  PHYQAATLIAS---------PSYPDAITWSSDNLVAVASGHIVTILNPAALDG-PRGLVV 270
            P+Y   TL  S         PS P  I   S+     ASGH   I  P+AL G   G  V
Sbjct: 2805 PYYTDTTLAVSTFAKLSSQTPSSPLTIYSGSE-----ASGH-TEIPQPSALPGIDVGSSV 2858

Query: 271  LRPRDPFPIGVVNREDLFEPS-------LVPTSLARDTE 366
            + P+D F    VN E  F+PS         P SL+ DT+
Sbjct: 2859 MSPQDSFKEIHVNIEATFKPSSEEYLHITEPPSLSPDTK 2897

>TF3C4_HUMAN (Q9UKN8) General transcription factor 3C polypeptide 4 (EC|
           2.3.1.48) (Transcription factor IIIC-delta subunit)
           (TF3C-delta) (TFIIIC 90 kDa subunit) (TFIIIC 90)
          Length = 822

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 27/124 (21%)
 Frame = +1

Query: 166 DAITWSSDNLVAVASGHIVTILNPAA-LDGP-RGLVVLRPRDPFPIG-----------VV 306
           + + WS D+ V+V++   + +L     +  P + LV+ R   P P+            V 
Sbjct: 68  EPLAWSEDHRVSVSTARSIAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKVGSKTEVA 127

Query: 307 NREDLFEPSLVPT-----SLARDTEPCARSV---------SWSQQGFAPNSGCLLAVCTV 444
             ++ F  S  PT      L R   P  +++         SWS  G   N  CLLA  T+
Sbjct: 128 ECKEKFAASKDPTVSQTFMLDRVFNPEGKALPPMRGFKYTSWSPMGCDANGRCLLAALTM 187

Query: 445 DGHV 456
           D  +
Sbjct: 188 DNRL 191

>DNBI_HCMVA (P17147) Major DNA-binding protein (MDBP)|
          Length = 1235

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 207 GNGHQVVA*PSDGVWIGRGGNEGGGL-VMRSHGQRNLRASNPKARR 73
           G G  V   PSDG+  GRGG  GG    M   G R L AS  +  R
Sbjct: 554 GGGRDVSGGPSDGLGGGRGGGGGGDSGGMMGRGGRMLGASVDRTYR 599

>Y150_MYCPN (P75036) Very hypothetical mgpC-like protein MPN150 (E07_orf224)|
          Length = 224

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 112 AMAPHYQAATLIASPSYPDAITWSSDNLVAVASGHIVTILNPAALDGP-RGLVVL 273
           A A  Y   T   + +Y  A+TWS+   +  A G+   + N A L+GP  GL  L
Sbjct: 88  AGAVGYDMTTDTNASTYNQALTWSTTAGLDSAGGYKALVENTAGLNGPINGLFTL 142

>DHE3_BACTN (P94598) Glutamate dehydrogenase (EC 1.4.1.3) (GDH)|
           (NAD(P)H-utilizing glutamate dehydrogenase)
          Length = 444

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = -2

Query: 320 RSSLLTTPMGKGSLGRSTTSPRGPSSAAGFRIV 222
           ++SL T PMG G  G S  SPRG S+A   R V
Sbjct: 112 KNSLTTLPMGGGK-GGSDFSPRGKSNAEVMRFV 143

>SYQ_DROME (Q9Y105) Probable glutaminyl-tRNA synthetase (EC 6.1.1.18)|
           (Glutamine--tRNA ligase) (GlnRS)
          Length = 778

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 266 LCFALGILFPLEWSTGKISLN 328
           LC ALGI  P++W  G++++N
Sbjct: 473 LCNALGIYCPVQWEYGRLNMN 493

>DCD_COREF (Q8FM44) Deoxycytidine triphosphate deaminase (EC 3.5.4.13) (dCTP|
           deaminase)
          Length = 193

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 317 SSLLTTPMGKGSLGRSTTSPRGPSSAAGF 231
           SS   TP G GSLG      RGP+ + G+
Sbjct: 155 SSPAETPYGSGSLGSKYQGQRGPTPSKGY 183


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,008,239
Number of Sequences: 219361
Number of extensions: 1378195
Number of successful extensions: 4114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4111
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)