>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = -1

Query: 229 PLPGKHIARDAAEEPEDGRRRSEEQAV----VDGRRELPRQIQRVRPPRNLGFACRVGEG 62
           P   K +ARD   +  DG+    EQA       GRR  P   +   PPR L    R G G
Sbjct: 59  PADAKDVARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGL----RGGSG 114

Query: 61  SRRG 50
             RG
Sbjct: 115 GTRG 118

>LEU1_STRCO (O31046) 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
          Length = 573

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 3   CKPVLQSHPRNPRRTVPRLLPSPTRQANPRFRGGRTRWI*RGSSRR 140
           C+ V+ ++   P R +   LP+   ++ P     R  W+ R  SRR
Sbjct: 200 CEAVMDTYQPGPGREIILNLPATVERSTPSTHADRFEWMGRNLSRR 245

>GIS3_YEAST (Q12418) Protein GIS3|
          Length = 502

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -1

Query: 247 LAGDDLPLPGKHIARDAAEEPEDGRRRSEEQAVVDGRRELPRQIQRVRPPRNLG 86
           L GD  P     +A  +  EP  GR  + E A  D +  L R    V+P  N G
Sbjct: 410 LFGDSTPWNLHFVATTSNTEPSQGRESASEHATADLKSSLVRVHSDVKPWFNNG 463

>XPC_DROME (Q24595) DNA-repair protein complementing XP-C cells homolog|
            (Xeroderma pigmentosum group C-complementing protein
            homolog) (XPCDM) (Mutagen-sensitive 209 protein)
          Length = 1293

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -1

Query: 241  GDDLPLPGKHIARDAAEEPEDGRRRSEEQAVVDGRRELPRQIQRVRPPRNL 89
            GDD+PLP K    +  +  +D     E    V     LP+ +Q +R  R +
Sbjct: 890  GDDVPLPKKRPKLEKLKNSQDSDEVFEPAKPVKKAPVLPKSVQNLRKDRRV 940

>SURE_HALSA (Q9HQB2) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside|
           5'-monophosphate phosphohydrolase)
          Length = 258

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 53  SPASFPDATGESKVSRRSHALDLT 124
           +P    DATGE  V+R SHA D+T
Sbjct: 172 APHPDADATGEMVVTRPSHAYDMT 195

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 6   KPVLQSHPRNPRRTVPRLLPSPTRQANPRFRGGRTR 113
           +P  +  P   RRT PR +P P R    R  G R R
Sbjct: 312 RPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRR 347

>NEST_HUMAN (P48681) Nestin|
          Length = 1618

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -1

Query: 226  LPGKHIARDAAEEPEDGRRRSEEQAVVDGRRELPRQIQRVRPPRNLG 86
            LPGK  +RD  E P +GR  SE +A        PR  +   P   LG
Sbjct: 1157 LPGK--SRDPWEPPREGREESEAEA--------PRGAEEAFPAETLG 1193

>RS5_RHOS4 (Q3J5Q5) 30S ribosomal protein S5|
          Length = 187

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -1

Query: 205 RDAAEEPEDGRRRSEEQAVVDGRRELPRQIQRVRPPRNLGFACRVGEGSRRGTVRLG 35
           R+   +  D R R E     D    + R  + V+  +  GFA  V  G +RG V  G
Sbjct: 4   RENRRDRRDDRSREETPEFADRLVAINRVSKTVKGGKRFGFAALVVVGDQRGRVGFG 60

>PKNA_MYCTU (P65726) Probable serine/threonine-protein kinase pknA (EC|
           2.7.11.1)
          Length = 431

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
 Frame = +2

Query: 14  PPVPSQKP*TDRPSPASFPDAT---------GESKVSRRS 106
           PP PSQ P   R +PA+ P  T         G +  SRRS
Sbjct: 280 PPRPSQTPPPGRAAPAAIPSGTTARVAANSAGRTAASRRS 319

>PKNA_MYCBO (P65727) Probable serine/threonine-protein kinase pknA (EC|
           2.7.11.1)
          Length = 431

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
 Frame = +2

Query: 14  PPVPSQKP*TDRPSPASFPDAT---------GESKVSRRS 106
           PP PSQ P   R +PA+ P  T         G +  SRRS
Sbjct: 280 PPRPSQTPPPGRAAPAAIPSGTTARVAANSAGRTAASRRS 319

>ABP1_YEAST (P15891) Actin-binding protein|
          Length = 591

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 229 PLPGKHIARDAAEEPED 179
           PLPG HI  D  EEPE+
Sbjct: 417 PLPGMHIEADNEEEPEE 433


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,579,636
Number of Sequences: 219361
Number of extensions: 524302
Number of successful extensions: 2215
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2214
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)