Clone Name | bastl06h12 |
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Clone Library Name | barley_pub |
>dbj|AK122000.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110I09, full insert sequence Length = 882 Score = 174 bits (88), Expect = 2e-40 Identities = 172/200 (86%) Strand = Plus / Plus Query: 236 atgggatggggaaccctcatatccaggcgcctcaaagttttttcattggcgttgttcgtc 295 ||||||||||||| | | || |||||||||||||||| ||||| |||| ||||| | Sbjct: 278 atgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttata 337 Query: 296 tacttggactataaggctgttcagaagagagtgcagtgggttagcgctgttaagaagcac 355 ||||| ||||||||||| |||||||||||||| | |||||| |||||| ||| ||| | Sbjct: 338 tacttcgactataaggcagttcagaagagagttaaatgggttggcgctggtaaaaaggat 397 Query: 356 gctatatgggcaaagacgcacgagcgcaatgctcgtcgtgttctcaacctgatgatagag 415 ||||||||| |||| || |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 398 gctatatggacaaaaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagag 457 Query: 416 ctagaaggtttgtgggtgaa 435 |||||||||| |||||||| Sbjct: 458 ttagaaggtttatgggtgaa 477
>dbj|AK120169.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031N20, full insert sequence Length = 1974 Score = 174 bits (88), Expect = 2e-40 Identities = 172/200 (86%) Strand = Plus / Plus Query: 236 atgggatggggaaccctcatatccaggcgcctcaaagttttttcattggcgttgttcgtc 295 ||||||||||||| | | || |||||||||||||||| ||||| |||| ||||| | Sbjct: 277 atgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttata 336 Query: 296 tacttggactataaggctgttcagaagagagtgcagtgggttagcgctgttaagaagcac 355 ||||| ||||||||||| |||||||||||||| | |||||| |||||| ||| ||| | Sbjct: 337 tacttcgactataaggcagttcagaagagagttaaatgggttggcgctggtaaaaaggat 396 Query: 356 gctatatgggcaaagacgcacgagcgcaatgctcgtcgtgttctcaacctgatgatagag 415 ||||||||| |||| || |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 397 gctatatggacaaaaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagag 456 Query: 416 ctagaaggtttgtgggtgaa 435 |||||||||| |||||||| Sbjct: 457 ttagaaggtttatgggtgaa 476
>dbj|AK065611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029I23, full insert sequence Length = 2957 Score = 174 bits (88), Expect = 2e-40 Identities = 172/200 (86%) Strand = Plus / Plus Query: 236 atgggatggggaaccctcatatccaggcgcctcaaagttttttcattggcgttgttcgtc 295 ||||||||||||| | | || |||||||||||||||| ||||| |||| ||||| | Sbjct: 277 atgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttata 336 Query: 296 tacttggactataaggctgttcagaagagagtgcagtgggttagcgctgttaagaagcac 355 ||||| ||||||||||| |||||||||||||| | |||||| |||||| ||| ||| | Sbjct: 337 tacttcgactataaggcagttcagaagagagttaaatgggttggcgctggtaaaaaggat 396 Query: 356 gctatatgggcaaagacgcacgagcgcaatgctcgtcgtgttctcaacctgatgatagag 415 ||||||||| |||| || |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 397 gctatatggacaaaaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagag 456 Query: 416 ctagaaggtttgtgggtgaa 435 |||||||||| |||||||| Sbjct: 457 ttagaaggtttatgggtgaa 476
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 133 bits (67), Expect = 5e-28 Identities = 112/127 (88%) Strand = Plus / Minus Query: 309 aggctgttcagaagagagtgcagtgggttagcgctgttaagaagcacgctatatgggcaa 368 |||| |||||||||||||| | |||||| |||||| ||| ||| | ||||||||| ||| Sbjct: 29006932 aggcagttcagaagagagttaaatgggttggcgctggtaaaaaggatgctatatggacaa 29006873 Query: 369 agacgcacgagcgcaatgctcgtcgtgttctcaacctgatgatagagctagaaggtttgt 428 | || |||||||| ||||||||||||||||||||||||||||||||| |||||||||| | Sbjct: 29006872 aaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagagttagaaggtttat 29006813 Query: 429 gggtgaa 435 ||||||| Sbjct: 29006812 gggtgaa 29006806 Score = 48.1 bits (24), Expect = 0.024 Identities = 63/76 (82%) Strand = Plus / Minus Query: 236 atgggatggggaaccctcatatccaggcgcctcaaagttttttcattggcgttgttcgtc 295 ||||||||||||| | | || |||||||||||||||| ||||| |||| ||||| | Sbjct: 29007103 atgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttata 29007044 Query: 296 tacttggactataagg 311 ||||| |||||||||| Sbjct: 29007043 tacttcgactataagg 29007028
>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0596H10 Length = 166570 Score = 133 bits (67), Expect = 5e-28 Identities = 112/127 (88%) Strand = Plus / Minus Query: 309 aggctgttcagaagagagtgcagtgggttagcgctgttaagaagcacgctatatgggcaa 368 |||| |||||||||||||| | |||||| |||||| ||| ||| | ||||||||| ||| Sbjct: 21919 aggcagttcagaagagagttaaatgggttggcgctggtaaaaaggatgctatatggacaa 21860 Query: 369 agacgcacgagcgcaatgctcgtcgtgttctcaacctgatgatagagctagaaggtttgt 428 | || |||||||| ||||||||||||||||||||||||||||||||| |||||||||| | Sbjct: 21859 aaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagagttagaaggtttat 21800 Query: 429 gggtgaa 435 ||||||| Sbjct: 21799 gggtgaa 21793 Score = 48.1 bits (24), Expect = 0.024 Identities = 63/76 (82%) Strand = Plus / Minus Query: 236 atgggatggggaaccctcatatccaggcgcctcaaagttttttcattggcgttgttcgtc 295 ||||||||||||| | | || |||||||||||||||| ||||| |||| ||||| | Sbjct: 22090 atgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttata 22031 Query: 296 tacttggactataagg 311 ||||| |||||||||| Sbjct: 22030 tacttcgactataagg 22015
>ref|XM_364735.1| Magnaporthe grisea 70-15 hypothetical protein (MG09580.4) partial mRNA Length = 1335 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 125 ggcgcgggcagagaagaaaagc 146 |||||||||||||||||||||| Sbjct: 63 ggcgcgggcagagaagaaaagc 84
>emb|Z84469.1|HS390O13 Human DNA sequence from clone RP3-390O13 on chromosome Xp11 Contains the 5' end of a novel gene, the 3' end of the PRKWNK3 for lysine deficient protein kinase 3, a ribosomal protein L7A (RPL7A) pseudogene and two CpG islands, complete sequence Length = 144676 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 ggcagagaagaaaagcttact 151 ||||||||||||||||||||| Sbjct: 92118 ggcagagaagaaaagcttact 92138
>emb|CR933736.12| Mouse DNA sequence from clone DN-183N8 on chromosome 11, complete sequence Length = 194230 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 32 ttcctgctctctcttttttct 52 ||||||||||||||||||||| Sbjct: 154219 ttcctgctctctcttttttct 154199
>emb|AL592547.9| Mouse DNA sequence from clone RP23-122P1 on chromosome 11 Contains two novel genes, the Chrne gene for cholinergic receptor nicotinic epsilon polypeptide, genes 4930544D05Rik, C730027E14Rik and LOC327956, the gene for mitogen-activated protein kinase kinase kinase kinase 6 (Map4k6-pending), the Pld2 gene for phospholipase D2, the Psmb6 gene for proteasome (prosome, macropain) subunit beta type 6, a ribosomal protein L34 pseudogene, the 3' end of gene 2010003F10Rik and three CpG islands, complete sequence Length = 123943 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 ttcctgctctctcttttttct 52 ||||||||||||||||||||| Sbjct: 3377 ttcctgctctctcttttttct 3397
>gb|AC025018.6| Homo sapiens chromosome 18, clone RP11-320C19, complete sequence Length = 159942 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 38 ctctctcttttttcttctggctatt 62 ||||||||||||| ||||||||||| Sbjct: 103884 ctctctcttttttattctggctatt 103860
>gb|AC154268.2| Mus musculus BAC clone RP24-235B13 from chromosome 13, complete sequence Length = 157088 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 cttttttcttctggctattct 64 ||||||||||||||||||||| Sbjct: 82276 cttttttcttctggctattct 82256
>emb|AL691401.1|SPAPB15E9 S.pombe chromosome I cosmid pB15E9 Length = 12573 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 38 ctctctcttttttcttctggctattctct 66 |||||||||||||||| ||||||| |||| Sbjct: 6000 ctctctcttttttcttgtggctatcctct 6028
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 attctctcgcgcacgcgccg 79 |||||||||||||||||||| Sbjct: 407474 attctctcgcgcacgcgccg 407455
>emb|CR788254.10| Zebrafish DNA sequence from clone DKEY-82K12 in linkage group 2, complete sequence Length = 227206 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 ctgctctctcttttttcttc 54 |||||||||||||||||||| Sbjct: 63084 ctgctctctcttttttcttc 63103
>gb|AC138299.14| Mus musculus chromosome 18, clone RP23-296E4, complete sequence Length = 257153 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cttcctgctctctctttttt 50 |||||||||||||||||||| Sbjct: 132413 cttcctgctctctctttttt 132432
>gb|AC125069.4| Mus musculus BAC clone RP23-436E5 from chromosome 2, complete sequence Length = 199446 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ctgctctctcttttttcttc 54 |||||||||||||||||||| Sbjct: 87173 ctgctctctcttttttcttc 87154
>gb|AC097064.2| Homo sapiens chromosome 1 clone RP11-524L19, complete sequence Length = 183425 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 cttcctgctctctcttttttcttc 54 |||||| ||||||||||||||||| Sbjct: 44650 cttccttctctctcttttttcttc 44673
>emb|AL356332.1|ATT31P16 Arabidopsis thaliana DNA chromosome 5, BAC clone T31P16 (ESSA project) Length = 80088 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 tctctcttttttcttctggctatt 62 ||||||||||||||| |||||||| Sbjct: 20874 tctctcttttttcttatggctatt 20897
>emb|AL807234.6| Mouse DNA sequence from clone RP23-293E12 on chromosome 4, complete sequence Length = 226546 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ctgctctctcttttttcttc 54 |||||||||||||||||||| Sbjct: 166166 ctgctctctcttttttcttc 166147
>emb|AL928721.5| Mouse DNA sequence from clone RP23-402N20 on chromosome 2, complete sequence Length = 79405 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ctgctctctcttttttcttc 54 |||||||||||||||||||| Sbjct: 8007 ctgctctctcttttttcttc 7988
>emb|AL929024.9| Mouse DNA sequence from clone RP23-480H10 on chromosome 2, complete sequence Length = 159617 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 cttactgccctgctaggagc 165 |||||||||||||||||||| Sbjct: 72606 cttactgccctgctaggagc 72587 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,564,019 Number of Sequences: 3902068 Number of extensions: 4564019 Number of successful extensions: 74452 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74373 Number of HSP's gapped (non-prelim): 79 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)