ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl06h11 |
|---|---|
| Clone Library Name | barley_pub |
>RL31B_LACAC (Q5FMB6) 50S ribosomal protein L31 type B| Length = 81 Score = 32.0 bits (71), Expect = 0.36 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +2 Query: 146 MTWFTSAGGAEFMQGPNMQPNERVTMMHETYPL 244 + + SA GA+F+ G M+P E + ETYPL Sbjct: 12 VVFMDSATGAKFVAGSTMKPEETIEYEGETYPL 44
>RL31B_LACJO (Q74LB6) 50S ribosomal protein L31 type B| Length = 83 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +2 Query: 146 MTWFTSAGGAEFMQGPNMQPNERVTMMHETYPL 244 + + SA GA+F+ G ++P E + +TYPL Sbjct: 12 VVFMDSATGAKFVAGSTLKPEETIEFEGKTYPL 44
>RHAR_SALTY (P40865) HTH-type transcriptional activator rhaR (L-rhamnose operon| transcriptional activator rhaR) Length = 282 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 8/54 (14%) Frame = +3 Query: 78 MNEQWACF--GFSRSPWH------NQHVMQS*PGLHQLEGQNSCRDPICNQMKE 215 +N W GF + WH + + Q+ ++QLE +++ RDP+ N+M E Sbjct: 96 LNVNWQAMIPGFQGAQWHPHWRLGSMGMNQARQVINQLEHESNGRDPLANEMAE 149
>RHAR_SALTI (Q8Z2V5) HTH-type transcriptional activator rhaR (L-rhamnose operon| transcriptional activator rhaR) Length = 282 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 8/54 (14%) Frame = +3 Query: 78 MNEQWACF--GFSRSPWH------NQHVMQS*PGLHQLEGQNSCRDPICNQMKE 215 +N W GF + WH + + Q+ ++QLE +++ RDP+ N+M E Sbjct: 96 LNVNWQAMIPGFQGAQWHPHWRLGSMGMNQARQVINQLEHESNGRDPLANEMAE 149
>RHAR_SALPA (Q5PKG1) HTH-type transcriptional activator rhaR (L-rhamnose operon| transcriptional activator rhaR) Length = 282 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 8/54 (14%) Frame = +3 Query: 78 MNEQWACF--GFSRSPWH------NQHVMQS*PGLHQLEGQNSCRDPICNQMKE 215 +N W GF + WH + + Q+ ++QLE +++ RDP+ N+M E Sbjct: 96 LNVNWQAMIPGFQGAQWHPHWRLGSMGMNQARQVINQLEHESNGRDPLANEMAE 149
>RHAR_SALCH (Q57HG7) HTH-type transcriptional activator rhaR (L-rhamnose operon| transcriptional activator rhaR) Length = 282 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 8/54 (14%) Frame = +3 Query: 78 MNEQWACF--GFSRSPWH------NQHVMQS*PGLHQLEGQNSCRDPICNQMKE 215 +N W GF + WH + + Q+ ++QLE +++ RDP+ N+M E Sbjct: 96 LNVNWQAMIPGFQGAQWHPHWRLGSMGMNQARQVINQLEHESNGRDPLANEMAE 149
>DPOA_YEAST (P13382) DNA polymerase alpha catalytic subunit (EC 2.7.7.7) (DNA| polymerase I) Length = 1468 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -3 Query: 198 ILGPCMNSAPPADVNQVMTASHAGCAMVNERTQNM 94 I+GPC AD N + ASH + ++ QN+ Sbjct: 491 IMGPCWLDIKGADFNSIRNASHCAVEVSVDKPQNI 525
>LRRC1_HUMAN (Q9BTT6) Leucine-rich repeat-containing protein 1 (LAP and no PDZ| protein) (LANO adapter protein) Length = 524 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/38 (31%), Positives = 18/38 (47%) Frame = -2 Query: 142 CITCWLCHGERENPKHAHCSFIQVHKIYHSLSRSFRHL 29 CI W C+ E+ HCS + V + + +RS L Sbjct: 4 CIPLWRCNRHVESIDKRHCSLVYVPEEIYRYARSLEEL 41
>LCMT2_NEUCR (Q9P3K9) Leucine carboxyl methyltransferase 2 (EC 2.1.1.-)| Length = 1213 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = +2 Query: 119 MAQPACDAVMTWFTSAGGAEFMQGPNMQPNERVTMMHETYPLSMSLLS 262 M P DAV+ W +S G +EF+ + P+ T+P + ++LS Sbjct: 324 METPGADAVIQWASSLGDSEFVLLEQLLPS------GPTHPFASTMLS 365
>THIC1_METAC (Q8TI28) Thiamine biosynthesis protein thiC 1| Length = 428 Score = 28.1 bits (61), Expect = 5.2 Identities = 9/28 (32%), Positives = 17/28 (60%) Frame = -2 Query: 160 CKPGHDCITCWLCHGERENPKHAHCSFI 77 C G ++ W+ H E+ENP +A+ ++ Sbjct: 183 CSRGGAFMSSWMLHNEKENPLYANFDYL 210
>EIL5_ARATH (Q9FJQ5) Putative ETHYLENE-INSENSITIVE3-like 5 protein| Length = 557 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Frame = +2 Query: 98 FWVLSFTMAQPACDAVMTWFTSAGGAEFMQGPNMQPNERVTMMHETYPLSM-SLLSGL 268 +W + Q A +AV + T A ++ PN + M+HE ++ SLLS L Sbjct: 141 WWKENVQFDQTAPNAVSDYLTLAAAQLISSNESLDPNSYIHMLHELQDTTLGSLLSAL 198
>NCKX1_RAT (Q9QZM6) Sodium/potassium/calcium exchanger 1| (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod Na-Ca+K exchanger) Length = 1181 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/52 (28%), Positives = 28/52 (53%) Frame = +2 Query: 203 PNERVTMMHETYPLSMSLLSGLSINLCLKLAFQLEETIFLGQAVPSIAMVET 358 PN+ +T+ + P + S + G + ++T+ +G+A PSIAM +T Sbjct: 68 PNDEITVTDKDPPEASSEVEGEML--------APQDTVIIGEAAPSIAMEDT 111
>YSH2_CAEEL (Q09944) Hypothetical protein F12A10.2| Length = 160 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +2 Query: 119 MAQPACDAVMTWFTSAGGAEFMQ 187 M QP+CD W+ S GG ++ Q Sbjct: 1 MCQPSCDFYGIWWNSFGGLDYRQ 23
>DNAJ_RHILO (Q98DD2) Chaperone protein dnaJ| Length = 376 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -2 Query: 175 CPSS*CKPGHDCITCWLCHG 116 C S KPG +TC +CHG Sbjct: 149 CSGSGAKPGTQPVTCSMCHG 168
>LAP4_HUMAN (Q14160) LAP4 protein (Scribble homolog protein) (hScrib)| Length = 1630 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/38 (34%), Positives = 17/38 (44%) Frame = -2 Query: 142 CITCWLCHGERENPKHAHCSFIQVHKIYHSLSRSFRHL 29 CI W C+ E+ HCS V + + SRS L Sbjct: 4 CIPLWRCNRHVESVDKRHCSLQAVPEEIYRYSRSLEEL 41
>KRA55_HUMAN (Q701N2) Keratin-associated protein 5-5 (Keratin-associated protein| 5.5) (Ultrahigh sulfur keratin-associated protein 5.5) (Keratin-associated protein 5-11) (Keratin-associated protein 5.11) Length = 221 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = +3 Query: 174 QNSCRDPICNQMKE*R*CMKLTLCQCHCFLGCLSTC 281 Q+SC P C Q C K C CF GC S+C Sbjct: 169 QSSCCKPYCCQSS----CCK----PCSCFSGCGSSC 196
>DNAJ_LEIXX (Q6AEC0) Chaperone protein dnaJ| Length = 369 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = -2 Query: 181 EFCPSS*CKPGHDCITCWLCHG 116 E C S C+PG + C +CHG Sbjct: 137 ETCDGSCCQPGTAPVPCDICHG 158 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,177,310 Number of Sequences: 219361 Number of extensions: 1188485 Number of successful extensions: 3153 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3086 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3151 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
