ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl06h07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY532594.1| Triticum aestivum minichromosomal maintenance fac... 622 e-175
2gb|AY532593.1| Triticum aestivum minichromosomal maintenance fac... 432 e-118
3dbj|AK121422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
4gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome... 180 2e-42
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 180 2e-42
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 180 2e-42
7dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 44 0.36
8gb|BT015953.1| Drosophila melanogaster SD09647 full insert cDNA 42 1.4
9gb|BT025193.1| Drosophila melanogaster FI01127 full insert cDNA 42 1.4
10ref|XM_883457.1| Leishmania major strain Friedlin hypothetical p... 42 1.4
11emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4,... 42 1.4
12gb|AY861166.1| Cottus gobio microsatellite Cott105 sequence 42 1.4
13emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 1.4
14gb|AC023740.4| Drosophila melanogaster X BAC RP98-27J18 (Roswell... 42 1.4
15gb|AC090097.5| Homo sapiens chromosome 8, clone RP11-369C6, comp... 42 1.4
16gb|AC092472.3| Homo sapiens chromosome 8 clone RP1-96P7 map map ... 42 1.4
17ref|NM_132004.2| Drosophila melanogaster CG4136-RA (CG4136), mRNA 42 1.4
18gb|AY070708.1| Drosophila melanogaster SD01032 full length cDNA 42 1.4
19gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 1.4
20gb|AC008863.8| Homo sapiens chromosome 5 clone CTD-2192G22, comp... 42 1.4
21emb|AJ234640.1|HVU234640 Hordeum vulgare genomic DNA fragment; c... 42 1.4
22ref|NM_209563.1| Eremothecium gossypii ADR114Cp (ADR114C), mRNA 42 1.4
23gb|AE003434.4| Drosophila melanogaster chromosome X, section 18 ... 42 1.4
24gb|AC122486.4| Mus musculus BAC clone RP24-380B9 from 12, comple... 42 1.4
25dbj|AP006418.1| Lotus japonicus genomic DNA, chromosome 6, clone... 42 1.4
26gb|AC153501.2| Mus musculus 10 BAC RP23-79J15 (Roswell Park Canc... 40 5.7
27ref|NM_196662.1| Oryza sativa (japonica cultivar-group) contains... 40 5.7
28ref|NM_193891.1| Oryza sativa (japonica cultivar-group), predic... 40 5.7
29ref|NM_189357.1| Oryza sativa (japonica cultivar-group), predic... 40 5.7
30gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
31gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
32gb|AY641547.1| Halomonas maura nitrate-reductase operon, complet... 40 5.7
33gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
34gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 40 5.7
35ref|XM_755863.1| Ustilago maydis 521 hypothetical protein (UM048... 40 5.7
36gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosom... 40 5.7
37ref|XM_380438.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 5.7
38ref|XM_858301.1| PREDICTED: Canis familiaris similar to Retinobl... 40 5.7
39ref|XM_535303.2| PREDICTED: Canis familiaris similar to Retinobl... 40 5.7
40ref|XM_506093.1| Yarrowia lipolytica CLIB122, YALI0F31383g predi... 40 5.7
41ref|XM_785070.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.7
42emb|BX011524.1|CNS08H20 Single read from an extremity of a full-... 40 5.7
43dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
44dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
45dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
46dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
47dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
48dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
49ref|XM_222159.3| PREDICTED: Rattus norvegicus zinc finger, CCHC ... 40 5.7
50gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.7
51dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
52dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
53dbj|AK105946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
54emb|AL590988.11| Mouse DNA sequence from clone RP23-46C18 on chr... 40 5.7
55gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
56emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 5.7 
>gb|AY532594.1| Triticum aestivum minichromosomal maintenance factor (MCM2) mRNA,
           complete cds
          Length = 2923

 Score =  622 bits (314), Expect = e-175
 Identities = 360/374 (96%), Gaps = 1/374 (0%)
 Strand = Plus / Plus

                                                                       
Query: 49  cacgcctcctccacaggacccttctcggagcccgcggatggacgactcggaaaacaacgc 108
           ||||| |||||||||||| ||| ||| || ||||||||||||||||||||| ||||||||
Sbjct: 4   cacgcgtcctccacaggagcctcctccga-cccgcggatggacgactcggagaacaacgc 62

                                                                       
Query: 109 gccgtcgaccccgggctcgccgggtttcagcaccgaccggctgccgcccaacaccaccac 168
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 63  gccgtcgaccccgggctcgccgggcttcagcaccgaccggctgccgcccaacaccaccac 122

                                                                       
Query: 169 cagccgcggcgccaccgacccgtcctcctactcggacgacgatggcgaggcggaggtcga 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cagccgcggcgccaccgacccgtcctcctactcggacgacgatggcgaggcggaggtcga 182

                                                                       
Query: 229 ccccaatgtgctccccgaggacgacggcgccaccgttatccgcgacgaggaggaagacga 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ccccaatgtgctccccgaggacgacggcgccaccgttatccgcgacgaggaggaagacga 242

                                                                       
Query: 289 cggggaagacctcttcaacgacgactacctcaatgattaccggagaatggatgagcagga 348
            ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 243 tggggaggacctcttcaacgacgactacctcaatgattaccgaagaatggatgagcagga 302

                                                                       
Query: 349 tcactatgagtccgttgggttagatgactccatagaggatgagaggaacctggatgagat 408
           ||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 303 tcagtatgagtcggttgggttagacgactcgatagaggatgagaggaacctggatgagat 362

                         
Query: 409 catggctgatcgaa 422
           ||||||||||||||
Sbjct: 363 catggctgatcgaa 376
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>gb|AY532593.1| Triticum aestivum minichromosomal maintenance factor (MCM2) gene,
            exons 1 through 18 and complete sequence
          Length = 8809

 Score =  432 bits (218), Expect = e-118
 Identities = 230/234 (98%)
 Strand = Plus / Plus

                                                                        
Query: 88   ggacgactcggaaaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccg 147
            |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2395 ggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggcttcagcaccgaccg 2454

                                                                        
Query: 148  gctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacga 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2455 gctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacga 2514

                                                                        
Query: 208  cgatggcgaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttat 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2515 cgatggcgaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttat 2574

                                                                  
Query: 268  ccgcgacgaggaggaagacgacggggaagacctcttcaacgacgactacctcaa 321
            ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 2575 ccgcgacgaggaggaagacgatggggaggacctcttcaacgacgactacctcaa 2628



 Score =  155 bits (78), Expect = 1e-34
 Identities = 93/98 (94%)
 Strand = Plus / Plus

                                                                        
Query: 325  ttaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccataga 384
            |||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| |||||
Sbjct: 3388 ttaccgaagaatggatgagcaggatcagtatgagtcggttgggttagacgactcgataga 3447

                                                  
Query: 385  ggatgagaggaacctggatgagatcatggctgatcgaa 422
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 3448 ggatgagaggaacctggatgagatcatggctgatcgaa 3485



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                        
Query: 1    ccacaattccccccttcccgccgaaaccctagcctcatctcgccaccgcacgcctcctcc 60
            |||| |||||||||||||||||||||||||||||||  | | |  || ||||| ||||||
Sbjct: 2194 ccaccattccccccttcccgccgaaaccctagcctcggcgcacagccacacgcgtcctcc 2253

                                         
Query: 61   acaggacccttctcggagcccgcggatgg 89
            |||||| ||| ||| || |||||||||||
Sbjct: 2254 acaggagcctcctccgaccccgcggatgg 2282
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>dbj|AK121422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N01, full
           insert sequence
          Length = 3214

 Score =  214 bits (108), Expect = 2e-52
 Identities = 178/200 (89%), Gaps = 6/200 (3%)
 Strand = Plus / Plus

                                                                       
Query: 215 gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 274
           |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 234 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 287

                                                                       
Query: 275 gaggaggaagacgacggggaagacctcttcaacgacgactacctcaatgattaccggaga 334
           |||||||| || |||||||| ||||||||||||||| |||||||| ||||||||||||| 
Sbjct: 288 gaggaggaggaggacggggaggacctcttcaacgacaactacctcgatgattaccggagg 347

                                                                       
Query: 335 atggatgagcaggatcactatgagtccgttgggttagatgactccatagaggatgagagg 394
           |||||||||||||| || ||||| || ||||||||||||||||| ||||||||||| |||
Sbjct: 348 atggatgagcaggaccagtatgaatcggttgggttagatgactcgatagaggatgaaagg 407

                               
Query: 395 aacctggatgagatcatggc 414
           ||||||||||||||||||||
Sbjct: 408 aacctggatgagatcatggc 427



 Score =  186 bits (94), Expect = 4e-44
 Identities = 118/126 (93%)
 Strand = Plus / Plus

                                                                       
Query: 85  gatggacgactcggaaaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccga 144
           |||||| |||||||| ||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct: 83  gatggatgactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacaga 142

                                                                       
Query: 145 ccggctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcgga 204
           | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 caggctgccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcgga 202

                 
Query: 205 cgacga 210
           ||||||
Sbjct: 203 cgacga 208
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>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0057E15, complete sequence
          Length = 149035

 Score =  180 bits (91), Expect = 2e-42
 Identities = 112/119 (94%)
 Strand = Plus / Plus

                                                                         
Query: 92    gactcggaaaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 151
             |||||||| ||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 97266 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 97325

                                                                        
Query: 152   ccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 210
             ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97326 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 97384



 Score =  129 bits (65), Expect = 8e-27
 Identities = 86/93 (92%)
 Strand = Plus / Plus

                                                                         
Query: 322   tgattaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccat 381
             |||||||||||| |||||||||||||| || ||||| || ||||||||||||||||| ||
Sbjct: 98224 tgattaccggaggatggatgagcaggaccagtatgaatcggttgggttagatgactcgat 98283

                                              
Query: 382   agaggatgagaggaacctggatgagatcatggc 414
             ||||||||| |||||||||||||||||||||||
Sbjct: 98284 agaggatgaaaggaacctggatgagatcatggc 98316



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 91/105 (86%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                         
Query: 215   gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 274
             |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 97410 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 97463

                                                          
Query: 275   gaggaggaagacgacggggaagacctcttcaacgacgactacctc 319
             |||||||| || |||||||| ||||||||||||||| ||||||||
Sbjct: 97464 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 97508
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  180 bits (91), Expect = 2e-42
 Identities = 112/119 (94%)
 Strand = Plus / Plus

                                                                            
Query: 92       gactcggaaaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 151
                |||||||| ||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 16456667 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 16456726

                                                                           
Query: 152      ccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 210
                ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16456727 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 16456785



 Score =  129 bits (65), Expect = 8e-27
 Identities = 86/93 (92%)
 Strand = Plus / Plus

                                                                            
Query: 322      tgattaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccat 381
                |||||||||||| |||||||||||||| || ||||| || ||||||||||||||||| ||
Sbjct: 16457625 tgattaccggaggatggatgagcaggaccagtatgaatcggttgggttagatgactcgat 16457684

                                                 
Query: 382      agaggatgagaggaacctggatgagatcatggc 414
                ||||||||| |||||||||||||||||||||||
Sbjct: 16457685 agaggatgaaaggaacctggatgagatcatggc 16457717



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 91/105 (86%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                            
Query: 215      gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 274
                |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 16456811 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 16456864

                                                             
Query: 275      gaggaggaagacgacggggaagacctcttcaacgacgactacctc 319
                |||||||| || |||||||| ||||||||||||||| ||||||||
Sbjct: 16456865 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 16456909
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  180 bits (91), Expect = 2e-42
 Identities = 112/119 (94%)
 Strand = Plus / Plus

                                                                            
Query: 92       gactcggaaaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 151
                |||||||| ||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 16547671 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 16547730

                                                                           
Query: 152      ccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 210
                ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16547731 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 16547789



 Score =  129 bits (65), Expect = 8e-27
 Identities = 86/93 (92%)
 Strand = Plus / Plus

                                                                            
Query: 322      tgattaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccat 381
                |||||||||||| |||||||||||||| || ||||| || ||||||||||||||||| ||
Sbjct: 16548629 tgattaccggaggatggatgagcaggaccagtatgaatcggttgggttagatgactcgat 16548688

                                                 
Query: 382      agaggatgagaggaacctggatgagatcatggc 414
                ||||||||| |||||||||||||||||||||||
Sbjct: 16548689 agaggatgaaaggaacctggatgagatcatggc 16548721



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 91/105 (86%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                            
Query: 215      gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 274
                |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 16547815 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 16547868

                                                             
Query: 275      gaggaggaagacgacggggaagacctcttcaacgacgactacctc 319
                |||||||| || |||||||| ||||||||||||||| ||||||||
Sbjct: 16547869 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 16547913
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 80      ccgcggatggacgactcggaaa 101
               ||||||||||||||||||||||
Sbjct: 2043809 ccgcggatggacgactcggaaa 2043830
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>gb|BT015953.1| Drosophila melanogaster SD09647 full insert cDNA
          Length = 2972

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 169  cagccgcggcgccaccgacccgtcctcct 197
            ||||| ||||||||||||| |||||||||
Sbjct: 1752 cagccacggcgccaccgactcgtcctcct 1724
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>gb|BT025193.1| Drosophila melanogaster FI01127 full insert cDNA
          Length = 2971

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 169  cagccgcggcgccaccgacccgtcctcct 197
            ||||| ||||||||||||| |||||||||
Sbjct: 1752 cagccacggcgccaccgactcgtcctcct 1724
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>ref|XM_883457.1| Leishmania major strain Friedlin hypothetical protein (P1105.02)
           partial mRNA
          Length = 507

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 198 actcggacgacgatggcgagg 218
           |||||||||||||||||||||
Sbjct: 479 actcggacgacgatggcgagg 499
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>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end
          Length = 247462

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 198   actcggacgacgatggcgagg 218
             |||||||||||||||||||||
Sbjct: 28850 actcggacgacgatggcgagg 28830
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>gb|AY861166.1| Cottus gobio microsatellite Cott105 sequence
          Length = 711

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 270 gcgacgaggaggaagacgacggggaagac 298
           ||||||||||||||||||| | |||||||
Sbjct: 297 gcgacgaggaggaagacgaggaggaagac 269
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 205     cgacgatggcgaggcggaggt 225
               |||||||||||||||||||||
Sbjct: 1468047 cgacgatggcgaggcggaggt 1468027
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>gb|AC023740.4| Drosophila melanogaster X BAC RP98-27J18 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 163764

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 169   cagccgcggcgccaccgacccgtcctcct 197
             ||||| ||||||||||||| |||||||||
Sbjct: 58418 cagccacggcgccaccgactcgtcctcct 58390
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>gb|AC090097.5| Homo sapiens chromosome 8, clone RP11-369C6, complete sequence
          Length = 170973

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 383   gaggatgagaggaacctggat 403
             |||||||||||||||||||||
Sbjct: 91539 gaggatgagaggaacctggat 91519
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>gb|AC092472.3| Homo sapiens chromosome 8 clone RP1-96P7 map map 8p21-p11, complete
              sequence
          Length = 167794

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 383    gaggatgagaggaacctggat 403
              |||||||||||||||||||||
Sbjct: 146103 gaggatgagaggaacctggat 146083
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>ref|NM_132004.2| Drosophila melanogaster CG4136-RA (CG4136), mRNA
          Length = 2983

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 169  cagccgcggcgccaccgacccgtcctcct 197
            ||||| ||||||||||||| |||||||||
Sbjct: 1765 cagccacggcgccaccgactcgtcctcct 1737
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>gb|AY070708.1| Drosophila melanogaster SD01032 full length cDNA
          Length = 2647

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 169  cagccgcggcgccaccgacccgtcctcct 197
            ||||| ||||||||||||| |||||||||
Sbjct: 1429 cagccacggcgccaccgactcgtcctcct 1401
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>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV,
              complete sequence
          Length = 1466886

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 275    gaggaggaagacgacggggaa 295
              |||||||||||||||||||||
Sbjct: 909354 gaggaggaagacgacggggaa 909334
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>gb|AC008863.8| Homo sapiens chromosome 5 clone CTD-2192G22, complete sequence
          Length = 152529

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 383    gaggatgagaggaacctggat 403
              |||||||||||||||||||||
Sbjct: 114816 gaggatgagaggaacctggat 114796
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>emb|AJ234640.1|HVU234640 Hordeum vulgare genomic DNA fragment; clone MWG0904.rev
          Length = 416

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 160 caccaccaccagccgcggcgccacc 184
           |||||||||||||| ||||||||||
Sbjct: 305 caccaccaccagccacggcgccacc 281
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>ref|NM_209563.1| Eremothecium gossypii ADR114Cp (ADR114C), mRNA
          Length = 2085

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 275 gaggaggaagacgacggggaa 295
           |||||||||||||||||||||
Sbjct: 154 gaggaggaagacgacggggaa 174
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>gb|AE003434.4| Drosophila melanogaster chromosome X, section 18 of 74 of the complete
              sequence
          Length = 303928

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 169    cagccgcggcgccaccgacccgtcctcct 197
              ||||| ||||||||||||| |||||||||
Sbjct: 287799 cagccacggcgccaccgactcgtcctcct 287771
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>gb|AC122486.4| Mus musculus BAC clone RP24-380B9 from 12, complete sequence
          Length = 128253

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 335    atggatgagcaggatcactat 355
              |||||||||||||||||||||
Sbjct: 108319 atggatgagcaggatcactat 108339
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>dbj|AP006418.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT23A02, TM0306,
             complete sequence
          Length = 62713

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 13    ccttcccgccgaaaccctagcctca 37
             |||||||| ||||||||||||||||
Sbjct: 47783 ccttcccgtcgaaaccctagcctca 47807
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>gb|AC153501.2| Mus musculus 10 BAC RP23-79J15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 251631

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   atgactccatagaggatgag 391
             ||||||||||||||||||||
Sbjct: 52421 atgactccatagaggatgag 52440
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>ref|NM_196662.1| Oryza sativa (japonica cultivar-group) contains similarity to
           gypsy-type retrotransposon (OSJNBa0012D19.23), mRNA
          Length = 1998

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 275 gaggaggaagacgacgggga 294
           ||||||||||||||||||||
Sbjct: 868 gaggaggaagacgacgggga 887
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>ref|NM_193891.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 960

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 cgacgaggaggaagacgacg 290
           ||||||||||||||||||||
Sbjct: 636 cgacgaggaggaagacgacg 655
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>ref|NM_189357.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1632

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 178 cgccaccgacccgtcctcct 197
           ||||||||||||||||||||
Sbjct: 843 cgccaccgacccgtcctcct 824
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>gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0012D19,
              complete sequence
          Length = 153276

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 275    gaggaggaagacgacgggga 294
              ||||||||||||||||||||
Sbjct: 121853 gaggaggaagacgacgggga 121872
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>gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1206_C08,
              complete sequence
          Length = 115026

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 271    cgacgaggaggaagacgacg 290
              ||||||||||||||||||||
Sbjct: 107836 cgacgaggaggaagacgacg 107817
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>gb|AY641547.1| Halomonas maura nitrate-reductase operon, complete sequence
          Length = 8823

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 244  cgaggacgacggcgccaccg 263
            ||||||||||||||||||||
Sbjct: 3486 cgaggacgacggcgccaccg 3505
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>gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1345_B12,
             complete sequence
          Length = 119909

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   cgacgaggaggaagacgacg 290
             ||||||||||||||||||||
Sbjct: 22028 cgacgaggaggaagacgacg 22009
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>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    acaccaccaccagccgcggc 178
              ||||||||||||||||||||
Sbjct: 653840 acaccaccaccagccgcggc 653821
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>ref|XM_755863.1| Ustilago maydis 521 hypothetical protein (UM04809.1) partial mRNA
          Length = 1827

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 271 cgacgaggaggaagacgacggggaagac 298
           |||||| ||||||||||||| |||||||
Sbjct: 864 cgacgacgaggaagacgacgaggaagac 891
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>gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosome 8, complete sequence
          Length = 177226

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    ctcctccacaggacccttct 73
             ||||||||||||||||||||
Sbjct: 72162 ctcctccacaggacccttct 72181
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>ref|XM_380438.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00262.1)
           partial mRNA
          Length = 1035

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 cgacgaggaggaagacgacg 290
           ||||||||||||||||||||
Sbjct: 402 cgacgaggaggaagacgacg 421
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>ref|XM_858301.1| PREDICTED: Canis familiaris similar to Retinoblastoma-like protein
           2 (130 kDa retinoblastoma-associated protein) (PRB2)
           (P130) (RBR-2), transcript variant 3 (LOC478127), mRNA
          Length = 2389

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 275 gaggaggaagacgacgggga 294
           ||||||||||||||||||||
Sbjct: 153 gaggaggaagacgacgggga 172
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>ref|XM_535303.2| PREDICTED: Canis familiaris similar to Retinoblastoma-like protein
           2 (130 kDa retinoblastoma-associated protein) (PRB2)
           (P130) (RBR-2), transcript variant 1 (LOC478127), mRNA
          Length = 4080

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 275 gaggaggaagacgacgggga 294
           ||||||||||||||||||||
Sbjct: 153 gaggaggaagacgacgggga 172
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>ref|XM_506093.1| Yarrowia lipolytica CLIB122, YALI0F31383g predicted mRNA
          Length = 1260

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 275  gaggaggaagacgacggggaagac 298
            |||||||||||||||| |||||||
Sbjct: 1108 gaggaggaagacgacgaggaagac 1131
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>ref|XM_785070.1| PREDICTED: Strongylocentrotus purpuratus similar to Hypothetical
            UPF0120 protein DKFZp564C186 homolog (LOC585237), mRNA
          Length = 2835

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 283  agacgacggggaagacctcttcaa 306
            |||||||| |||||||||||||||
Sbjct: 2055 agacgacgaggaagacctcttcaa 2078
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>emb|BX011524.1|CNS08H20 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA18BG03 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 927

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 271 cgacgaggaggaagacgacggggaagac 298
           ||||||||||| | ||||||||||||||
Sbjct: 795 cgacgaggagggaaacgacggggaagac 768
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 275      gaggaggaagacgacgggga 294
                ||||||||||||||||||||
Sbjct: 15063234 gaggaggaagacgacgggga 15063253
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 271      cgacgaggaggaagacgacg 290
                ||||||||||||||||||||
Sbjct: 22276608 cgacgaggaggaagacgacg 22276589
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 271      cgacgaggaggaagacgacg 290
                ||||||||||||||||||||
Sbjct: 26869596 cgacgaggaggaagacgacg 26869577
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 178      cgccaccgacccgtcctcct 197
                ||||||||||||||||||||
Sbjct: 42357219 cgccaccgacccgtcctcct 42357238



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 271      cgacgaggaggaagacgacg 290
                ||||||||||||||||||||
Sbjct: 15675773 cgacgaggaggaagacgacg 15675792
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>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0401G10
          Length = 160704

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    cgccaccgacccgtcctcct 197
              ||||||||||||||||||||
Sbjct: 129176 cgccaccgacccgtcctcct 129195
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>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0483G10
          Length = 190721

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   cgccaccgacccgtcctcct 197
             ||||||||||||||||||||
Sbjct: 16557 cgccaccgacccgtcctcct 16576
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>ref|XM_222159.3| PREDICTED: Rattus norvegicus zinc finger, CCHC domain containing 8
           (predicted) (Zcchc8_predicted), mRNA
          Length = 2675

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 cgacgaggaggaagacgacg 290
           ||||||||||||||||||||
Sbjct: 162 cgacgaggaggaagacgacg 181
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 166     caccagccgcggcgccaccgacccgtcc 193
               ||||||||||| |||||||||| |||||
Sbjct: 2859792 caccagccgcgccgccaccgacgcgtcc 2859819



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 160     caccaccaccagccgcggcg 179
               ||||||||||||||||||||
Sbjct: 1645167 caccaccaccagccgcggcg 1645186
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>dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0566A10
          Length = 174367

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   cgacgaggaggaagacgacg 290
             ||||||||||||||||||||
Sbjct: 55031 cgacgaggaggaagacgacg 55012
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>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0416G11
          Length = 138858

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    cgacgaggaggaagacgacg 290
              ||||||||||||||||||||
Sbjct: 113670 cgacgaggaggaagacgacg 113689
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>dbj|AK105946.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C05, full
           insert sequence
          Length = 1367

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 cgacgaggaggaagacgacg 290
           ||||||||||||||||||||
Sbjct: 978 cgacgaggaggaagacgacg 997
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>emb|AL590988.11| Mouse DNA sequence from clone RP23-46C18 on chromosome 8, complete
              sequence
          Length = 183975

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     ctcctccacaggacccttct 73
              ||||||||||||||||||||
Sbjct: 181578 ctcctccacaggacccttct 181597
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 275      gaggaggaagacgacgggga 294
                ||||||||||||||||||||
Sbjct: 15071475 gaggaggaagacgacgggga 15071494
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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 275     gaggaggaagacgacggggaagac 298
               |||||||||||||||| |||||||
Sbjct: 3903697 gaggaggaagacgacgaggaagac 3903674


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,083,168
Number of Sequences: 3902068
Number of extensions: 3083168
Number of successful extensions: 72505
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71662
Number of HSP's gapped (non-prelim): 842
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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