>UBP5_ARATH (O22207) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 5)
           (Ubiquitin-specific-processing protease 5)
           (Deubiquitinating enzyme 5) (AtUBP5)
          Length = 924

 Score = 81.6 bits (200), Expect = 8e-16
 Identities = 43/91 (47%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
 Frame = +3

Query: 189 IRDITAAAEAHAKEGDIFFLITNRWWQSWIDYVIQDSAGVPSNGS----HHHEFGSNTPR 356
           IRDI  AAEA++KEGD F+LIT RWWQ WI+YV QD     ++GS    H    GS+T +
Sbjct: 24  IRDIAIAAEANSKEGDTFYLITQRWWQEWIEYVNQDQPCNTNDGSSLSEHCDSPGSSTLK 83

Query: 357 RPGAIDNTNLLDDMASEVSDMQIELHDTLAE 449
           +P  IDN++L+ D + E      E+ +TL E
Sbjct: 84  KPSRIDNSDLIYDSSLEDPSNTSEIIETLQE 114

>UBP15_MOUSE (Q8R5H1) Ubiquitin carboxyl-terminal hydrolase 15 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 15)
           (Ubiquitin-specific-processing protease 15)
           (Deubiquitinating enzyme 15)
          Length = 981

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +3

Query: 195 DITAAAEAHAKEGDIFFLITNRWWQSWIDYVIQDSAGVPSNGSHHHEFGSNTPRRPGAID 374
           DI    +   ++GD ++L+ +RW++ W  YV  DS      G  +          PG ID
Sbjct: 15  DIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQN--------VYPGPID 66

Query: 375 NTNLLDD 395
           N+ LL D
Sbjct: 67  NSGLLKD 73

>UBP15_HUMAN (Q9Y4E8) Ubiquitin carboxyl-terminal hydrolase 15 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 15)
           (Ubiquitin-specific-processing protease 15)
           (Deubiquitinating enzyme 15) (Unph-2) (Unph4)
          Length = 981

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +3

Query: 195 DITAAAEAHAKEGDIFFLITNRWWQSWIDYVIQDSAGVPSNGSHHHEFGSNTPRRPGAID 374
           DI    +   ++GD ++L+ +RW++ W  YV  DS      G  +          PG ID
Sbjct: 15  DIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQN--------VYPGPID 66

Query: 375 NTNLLDD 395
           N+ LL D
Sbjct: 67  NSGLLKD 73

>UBP4_HUMAN (Q13107) Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 4)
           (Ubiquitin-specific-processing protease 4)
           (Deubiquitinating enzyme 4) (Ubiquitous nuclear protein
           homolog)
          Length = 963

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 225 KEGDIFFLITNRWWQSWIDYVIQDSAGVPSNGSHHHEFGSNTPRRPGAIDNTNLLDDMAS 404
           + G  ++LI +RW++ W  YV  DS  + + G H+          PG IDN+ L  D  S
Sbjct: 29  QRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVGEHN--------LFPGPIDNSGLFSDPES 80

Query: 405 E 407
           +
Sbjct: 81  Q 81

>UBP4_MOUSE (P35123) Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 4)
           (Ubiquitin-specific-processing protease 4)
           (Deubiquitinating enzyme 4) (Ubiquitous nuclear protein)
          Length = 962

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 225 KEGDIFFLITNRWWQSWIDYVIQDSAGVPSNGSHHHEFGSNTPRRPGAIDNTNLLDDMAS 404
           + G  ++LI +RW++ W  YV  DS  + + G H+          PG IDN+ L  D  S
Sbjct: 29  QRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVGEHN--------LFPGPIDNSGLFSDPES 80

Query: 405 E 407
           +
Sbjct: 81  Q 81

>Y1052_HAEIN (P45008) Putative HTH-type transcriptional regulator HI1052|
          Length = 298

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = +3

Query: 219 HAKEGDIFFLITNRWWQSWIDYVIQDSAGVPSNGSHH-----HEFGSNTP 353
           H KEGD+FFL  N+     + Y     A +P+  SH      H+ G  TP
Sbjct: 59  HLKEGDVFFLPQNQ--PHSMHYSANKRADIPTKKSHQGLFELHQIGRGTP 106

>UBP32_HUMAN (Q8NFA0) Ubiquitin carboxyl-terminal hydrolase 32 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 32)
           (Ubiquitin-specific-processing protease 32)
           (Deubiquitinating enzyme 32) (NY-REN-60 antigen)
          Length = 1604

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 231 GDIFFLITNRWWQSWIDYVIQDSAGV---PSNGSHHHEFGSNTPRRP 362
           G  +F+I+ +WWQ W +YV  D+  V   PS+  +  ++   T   P
Sbjct: 393 GHNWFIISMQWWQQWKEYVKYDANPVVIEPSSVLNGGKYSFGTAAHP 439

>PO121_RAT (P52591) Nuclear envelope pore membrane protein POM 121 (Pore|
           membrane protein of 121 kDa) (P145)
          Length = 1199

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 9   GKTKASPEAKPFVYPVAPSKLKEKPSPTLTLAQSSSPAS 125
           G   ASP  KP ++P  P    + P PT + A +++PAS
Sbjct: 692 GPACASPMFKP-IFPATPKSESDNPLPTSSSAATTTPAS 729

>H1_YEAST (P53551) Histone H1|
          Length = 258

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 30  EAKPFVYPVAPSKLKEKPSPTLTLAQSSSPAS 125
           +AK     +AP K+ +K SPT+T  ++SSP+S
Sbjct: 146 KAKAASTKLAPKKVVKKKSPTVTAKKASSPSS 177


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,237,490
Number of Sequences: 219361
Number of extensions: 843565
Number of successful extensions: 3158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3124
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)