>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator)
          Length = 910

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
 Frame = +1

Query: 178 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 330
           RG VK V SG  +++ G  +   PPE+ I LS + A  LARR  V         DEP+A+
Sbjct: 21  RGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAVAQPDAKDTPDEPWAF 80

Query: 331 ESREFLR 351
            +REFLR
Sbjct: 81  PAREFLR 87

>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator)
          Length = 910

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 15/86 (17%)
 Frame = +1

Query: 139 AIMASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR 300
           A  A ++G+SG        RG VK V SG  +++ G  +   PPE+ I LS + A  LAR
Sbjct: 2   ASSAQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLAR 61

Query: 301 RGGV---------DEPFAWESREFLR 351
           R            DEP+A+ +REFLR
Sbjct: 62  RAAATQPDGKDTPDEPWAFPAREFLR 87

>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (SND p102) (p105
           coactivator)
          Length = 909

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 15/83 (18%)
 Frame = +1

Query: 148 ASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGG 309
           A ++G+SG        RG VK V SG  +++ G  +   PPE+ I LS + A  LARR  
Sbjct: 4   AQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAA 63

Query: 310 V---------DEPFAWESREFLR 351
                     DEP+A+ +REFLR
Sbjct: 64  ATQPDGKDTPDEPWAFPAREFLR 86

>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (4SNc-Tudor domain
           protein)
          Length = 897

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
 Frame = +1

Query: 142 IMASNTGASGWLRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRG----- 306
           + +S   A    RG VK V SG  +++ G  +   PPE+ I LS + A  LARR      
Sbjct: 9   VQSSQASAPQLQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGALARRAIQGQP 68

Query: 307 ----GVDEPFAWESREFLR 351
                 DEP+A+++REF+R
Sbjct: 69  DTKDTPDEPWAFQAREFMR 87

>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (EBNA2 coactivator
           p100)
          Length = 910

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
 Frame = +1

Query: 178 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 330
           RG +K V SG  +++ G  +   PPE+ I LS + A  LARR            DEP+A+
Sbjct: 21  RGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAF 80

Query: 331 ESREFLR 351
            +REFLR
Sbjct: 81  PAREFLR 87

>HISX_BRAJA (P59397) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 431

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +1

Query: 115 LAAGQSQGAIMASNTGASGWLRGKVKAV----TSGDCLLIMGSTKAEIPPEKSITLSYLM 282
           + AG S+  ++A +TG + W+   + A     TS   +LI  S +     EK++      
Sbjct: 232 MIAGPSEVLVIADDTGNADWIAADLLAQAEHDTSAQSILITDSARLAADVEKAVEAQLKT 291

Query: 283 APRLA 297
            PR A
Sbjct: 292 LPRTA 296

>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 4 (Hyperpolarization-activated
           cation channel 4) (HAC-4)
          Length = 1175

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 118 AAG--QSQGAIMASNTGASGWLRGKVKAVTSGDCLLIMGS 231
           AAG  +S+GA +       G  RG  K+ T+GDC    GS
Sbjct: 66  AAGGAESRGAALGGAADGEGPARGAAKSSTNGDCRRFRGS 105

>KAPR_USTMA (P49605) cAMP-dependent protein kinase regulatory subunit (PKA|
           regulatory subunit)
          Length = 522

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = -3

Query: 326 ANGSSTPPRRASLGAIRYDRVMDFSGG----ISALVLPMMRRQSPEVTAFTLPLSHPEAP 159
           A G ++P +RASL     D     +GG    +++L +PM   QSP+ T      + P AP
Sbjct: 78  APGLASPTQRASL--FHSDPFAPGAGGGALPVASLAVPMDASQSPDSTPAPATPAAPAAP 135

Query: 158 VFDAMIAPWDWPAASG 111
              A  AP+     SG
Sbjct: 136 A--APAAPFSSLGGSG 149

>CRTE_RHOCA (P17060) Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)|
           (GGPP synthetase) (Farnesyltranstransferase)
          Length = 289

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 193 AVTSGDCLLIMG----STKAEIPPEKSITLSYLMAPRLARRGGVDEPFAWES 336
           AV +GD LLI G    +    + P++++ L   +      RGG+    AWES
Sbjct: 106 AVLAGDSLLIRGFEVLADVGAVNPDRALKLISKLGQLSGARGGICAGQAWES 157

>COBQ_MYCTU (P0A532) Cobyric acid synthase|
          Length = 494

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +3

Query: 156 HRSFRMAKGQGEGCDFWGLPSHHGEHQGRDPAREVHHSVIPYGPKAGSSW 305
           H+  R+ +G+G G    G   HHG     D A E        GP  G+ W
Sbjct: 375 HKVLRLPRGEGLGVPASGYEIHHGRITRGDTAEEFLGGARD-GPVFGTMW 423

>COBQ_MYCBO (P0A533) Cobyric acid synthase|
          Length = 494

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +3

Query: 156 HRSFRMAKGQGEGCDFWGLPSHHGEHQGRDPAREVHHSVIPYGPKAGSSW 305
           H+  R+ +G+G G    G   HHG     D A E        GP  G+ W
Sbjct: 375 HKVLRLPRGEGLGVPASGYEIHHGRITRGDTAEEFLGGARD-GPVFGTMW 423

>MYCB2_MOUSE (Q7TPH6) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc|
            binding protein 2) (Protein associated with Myc)
            (Pam/highwire/rpm-1 protein)
          Length = 4711

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 116  SGLRLPIRDPGEGVWPAG*SLLS-RPDPDPN 27
            +GL + ++DP +G+ P G  L+  + DP PN
Sbjct: 2393 AGLEVKVKDPPKGMIPPGTQLVKPKADPQPN 2423

>AMYH_SACDI (P04065) Glucoamylase S1 precursor (EC 3.2.1.3) (Glucan|
           1,4-alpha-glucosidase) (1,4-alpha-D-glucan
           glucohydrolase) (GAI)
          Length = 767

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 324 KWLIDSTTTSQPWGHKV*QSDGLLWRDLCL 235
           KW +D+T  ++PWG    Q+DG   R + +
Sbjct: 443 KWNVDNTAFTEPWGRP--QNDGPALRSIAI 470

>LPRF_MYCTU (P65314) Putative lipoprotein lprF precursor|
          Length = 261

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 344 NSLLSQANGSSTPPRRASLGAI 279
           N L+SQA GS  P R +SLGA+
Sbjct: 2   NGLISQACGSHRPRRPSSLGAV 23

>LPRF_MYCBO (P65315) Putative lipoprotein lprF precursor|
          Length = 261

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 344 NSLLSQANGSSTPPRRASLGAI 279
           N L+SQA GS  P R +SLGA+
Sbjct: 2   NGLISQACGSHRPRRPSSLGAV 23

>AMYI_SACDI (P29760) Glucoamylase S2 precursor (EC 3.2.1.3) (Glucan|
           1,4-alpha-glucosidase) (1,4-alpha-D-glucan
           glucohydrolase) (GAII)
          Length = 768

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 324 KWLIDSTTTSQPWGHKV*QSDGLLWRDLCL 235
           KW +D+T  ++PWG    Q+DG   R + +
Sbjct: 444 KWNVDNTAFTEPWGRP--QNDGPALRSIAI 471

>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding|
           protein MBD6)
          Length = 1003

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 34/110 (30%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
 Frame = -3

Query: 350 LRNSLLSQANGSSTPPRRA-SLGAIRYDRVMDFSGGISALVLPMMRRQSPEVTAFTLPLS 174
           L +SLLS A  +  PP    S    R  R    S   S+ + P  RR     T F L   
Sbjct: 319 LASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRPRRPPTVFRLLEG 378

Query: 173 H-PEAPVFDAMIAPWDWPAASGLRLPIRDPGEGVWPAG*SLLSRPDPDPN 27
             P+ P      AP   P      LP  +P + + P+  SLL  P P P+
Sbjct: 379 RGPQTPRRSRPRAPA--PVPQPFSLP--EPSQPILPSVLSLLGLPTPGPS 424

>PFA5_YARLI (Q6C7D1) Palmitoyltransferase PFA5 (EC 2.3.1.-) (Protein fatty|
           acyltransferase 5)
          Length = 334

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 195 CDFWGLPSHHGEHQGRDPAREVHHSVI 275
           CD WG+P    E Q   P R  HHS I
Sbjct: 113 CDGWGMPKWCSECQTHKPDR-THHSAI 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,642,148
Number of Sequences: 219361
Number of extensions: 984171
Number of successful extensions: 2746
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2740
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)