Clone Name | bastl06g08 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3549 Score = 226 bits (114), Expect = 4e-56 Identities = 176/196 (89%), Gaps = 3/196 (1%) Strand = Plus / Plus Query: 160 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 219 ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| |||||| Sbjct: 237 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 296 Query: 220 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 276 |||||||||||||||||||| || || ||||| |||||||| || |||||||||||| Sbjct: 297 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 356 Query: 277 cttatggccccaaggctggctcgtcgtggtggagtcgatgagccatttgcttgggaaagc 336 || |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| Sbjct: 357 ctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagc 416 Query: 337 agggagtttctgagga 352 ||||||||||| |||| Sbjct: 417 agggagtttctaagga 432
>gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120 mRNA, complete cds Length = 2961 Score = 226 bits (114), Expect = 4e-56 Identities = 176/196 (89%), Gaps = 3/196 (1%) Strand = Plus / Plus Query: 160 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 219 ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| |||||| Sbjct: 16 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 75 Query: 220 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 276 |||||||||||||||||||| || || ||||| |||||||| || |||||||||||| Sbjct: 76 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 135 Query: 277 cttatggccccaaggctggctcgtcgtggtggagtcgatgagccatttgcttgggaaagc 336 || |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| Sbjct: 136 ctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagc 195 Query: 337 agggagtttctgagga 352 ||||||||||| |||| Sbjct: 196 agggagtttctaagga 211
>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full insert sequence Length = 3547 Score = 226 bits (114), Expect = 4e-56 Identities = 176/196 (89%), Gaps = 3/196 (1%) Strand = Plus / Plus Query: 160 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 219 ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| |||||| Sbjct: 237 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 296 Query: 220 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 276 |||||||||||||||||||| || || ||||| |||||||| || |||||||||||| Sbjct: 297 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 356 Query: 277 cttatggccccaaggctggctcgtcgtggtggagtcgatgagccatttgcttgggaaagc 336 || |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| Sbjct: 357 ctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagc 416 Query: 337 agggagtttctgagga 352 ||||||||||| |||| Sbjct: 417 agggagtttctaagga 432
>gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120 gene, complete cds Length = 5478 Score = 145 bits (73), Expect = 1e-31 Identities = 123/139 (88%), Gaps = 3/139 (2%) Strand = Plus / Plus Query: 160 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 219 ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| |||||| Sbjct: 45 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 104 Query: 220 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 276 |||||||||||||||||||| || || ||||| |||||||| || |||||||||||| Sbjct: 105 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 164 Query: 277 cttatggccccaaggctgg 295 || |||||||||||||||| Sbjct: 165 ctcatggccccaaggctgg 183 Score = 85.7 bits (43), Expect = 9e-14 Identities = 55/59 (93%) Strand = Plus / Plus Query: 294 ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgagga 352 |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||| Sbjct: 541 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaagga 599
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 145 bits (73), Expect = 1e-31 Identities = 123/139 (88%), Gaps = 3/139 (2%) Strand = Plus / Minus Query: 160 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 219 ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| |||||| Sbjct: 19123886 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 19123827 Query: 220 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 276 |||||||||||||||||||| || || ||||| |||||||| || |||||||||||| Sbjct: 19123826 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 19123767 Query: 277 cttatggccccaaggctgg 295 || |||||||||||||||| Sbjct: 19123766 ctcatggccccaaggctgg 19123748 Score = 85.7 bits (43), Expect = 9e-14 Identities = 55/59 (93%) Strand = Plus / Minus Query: 294 ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgagga 352 |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||| Sbjct: 19123390 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaagga 19123332
>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0415B12 Length = 157419 Score = 145 bits (73), Expect = 1e-31 Identities = 123/139 (88%), Gaps = 3/139 (2%) Strand = Plus / Minus Query: 160 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 219 ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| |||||| Sbjct: 22135 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 22076 Query: 220 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 276 |||||||||||||||||||| || || ||||| |||||||| || |||||||||||| Sbjct: 22075 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 22016 Query: 277 cttatggccccaaggctgg 295 || |||||||||||||||| Sbjct: 22015 ctcatggccccaaggctgg 21997 Score = 85.7 bits (43), Expect = 9e-14 Identities = 55/59 (93%) Strand = Plus / Minus Query: 294 ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgagga 352 |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||| Sbjct: 21639 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaagga 21581
>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17 Length = 149142 Score = 145 bits (73), Expect = 1e-31 Identities = 123/139 (88%), Gaps = 3/139 (2%) Strand = Plus / Minus Query: 160 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 219 ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| |||||| Sbjct: 129407 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 129348 Query: 220 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 276 |||||||||||||||||||| || || ||||| |||||||| || |||||||||||| Sbjct: 129347 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 129288 Query: 277 cttatggccccaaggctgg 295 || |||||||||||||||| Sbjct: 129287 ctcatggccccaaggctgg 129269 Score = 85.7 bits (43), Expect = 9e-14 Identities = 55/59 (93%) Strand = Plus / Minus Query: 294 ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgagga 352 |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||| Sbjct: 128911 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaagga 128853
>gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete sequence Length = 117358 Score = 61.9 bits (31), Expect = 1e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 294 ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgagga 352 ||||||| | ||||| |||||||| |||||||| |||||||| || ||||||||||||| Sbjct: 103351 ggctcgtagaggtggtgtcgatgaaccatttgcatgggaaagtagagagtttctgagga 103293
>gb|BT013149.1| Lycopersicon esculentum clone 134149F, mRNA sequence Length = 3381 Score = 60.0 bits (30), Expect = 5e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 293 tggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcag 338 |||| |||||||||||||| |||||||||||||| ||| ||||||| Sbjct: 319 tggcacgtcgtggtggagtggatgagccatttgcatggcaaagcag 364
>ref|NM_125572.2| Arabidopsis thaliana nuclease/ nucleic acid binding AT5G61780 mRNA, complete cds Length = 3552 Score = 56.0 bits (28), Expect = 8e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 313 gatgagccatttgcttgggaaagcagggagtttctgagga 352 |||||||| ||||| |||||||||||||||||||| |||| Sbjct: 444 gatgagccttttgcatgggaaagcagggagtttctaagga 483
>dbj|AB010069.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC9 Length = 57246 Score = 56.0 bits (28), Expect = 8e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 313 gatgagccatttgcttgggaaagcagggagtttctgagga 352 |||||||| ||||| |||||||||||||||||||| |||| Sbjct: 27733 gatgagccttttgcatgggaaagcagggagtttctaagga 27772
>gb|BT002044.1| Arabidopsis thaliana 100 kDa coactivator - like protein (At5g61780) mRNA, complete cds Length = 3538 Score = 56.0 bits (28), Expect = 8e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 313 gatgagccatttgcttgggaaagcagggagtttctgagga 352 |||||||| ||||| |||||||||||||||||||| |||| Sbjct: 445 gatgagccttttgcatgggaaagcagggagtttctaagga 484
>dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein, complete cds Length = 3379 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 184 aaggtgaaggctgtgacttctggggactgc 213 |||||||||||||| ||||||||||||||| Sbjct: 237 aaggtgaaggctgttacttctggggactgc 266 Score = 50.1 bits (25), Expect = 0.005 Identities = 43/49 (87%) Strand = Plus / Plus Query: 304 ggtggagtcgatgagccatttgcttgggaaagcagggagtttctgagga 352 ||||| || |||||| ||||||| |||||||| || ||||||||||||| Sbjct: 366 ggtggtgttgatgaggcatttgcatgggaaagtagagagtttctgagga 414
>dbj|AB078602.1| Pisum sativum mRNA for 110kDa protein HMP, partial cds Length = 1339 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 184 aaggtgaaggctgtgacttctggggactgc 213 |||||||||||||| ||||||||||||||| Sbjct: 237 aaggtgaaggctgttacttctggggactgc 266 Score = 50.1 bits (25), Expect = 0.005 Identities = 43/49 (87%) Strand = Plus / Plus Query: 304 ggtggagtcgatgagccatttgcttgggaaagcagggagtttctgagga 352 ||||| || |||||| ||||||| |||||||| || ||||||||||||| Sbjct: 366 ggtggtgttgatgaggcatttgcatgggaaagtagagagtttctgagga 414
>dbj|AP004932.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT10J03, TM0094a, complete sequence Length = 65557 Score = 48.1 bits (24), Expect = 0.019 Identities = 36/40 (90%) Strand = Plus / Minus Query: 313 gatgagccatttgcttgggaaagcagggagtttctgagga 352 ||||| |||||||| ||||||||||| |||| |||||||| Sbjct: 54104 gatgaaccatttgcatgggaaagcagagagtatctgagga 54065 Score = 48.1 bits (24), Expect = 0.019 Identities = 36/40 (90%) Strand = Plus / Minus Query: 313 gatgagccatttgcttgggaaagcagggagtttctgagga 352 ||||| |||||||| ||||||||||| |||| |||||||| Sbjct: 38111 gatgaaccatttgcatgggaaagcagagagtatctgagga 38072 Score = 48.1 bits (24), Expect = 0.019 Identities = 36/40 (90%) Strand = Plus / Minus Query: 313 gatgagccatttgcttgggaaagcagggagtttctgagga 352 ||||| |||||||| ||||||||||| |||| |||||||| Sbjct: 25201 gatgaaccatttgcatgggaaagcagagagtatctgagga 25162
>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis gene cluster, partial sequence Length = 103450 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 103 aggcggaggccgctcgccgccg 124 |||||||||||||||||||||| Sbjct: 60057 aggcggaggccgctcgccgccg 60036
>emb|AJ632310.1| Cotesia congregata virus complete genome, segment Circle7 Length = 24748 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 ctggctcgtcgtggtggagtc 312 ||||||||||||||||||||| Sbjct: 16499 ctggctcgtcgtggtggagtc 16519
>gb|AY651828.1| Cotesia plutellae polydnavirus segment CpBV-S30, complete sequence Length = 23535 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 292 ctggctcgtcgtggtggagtc 312 ||||||||||||||||||||| Sbjct: 14723 ctggctcgtcgtggtggagtc 14703
>gb|AC125265.8| Mus musculus chromosome 6, clone RP24-444K24, complete sequence Length = 156056 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 ccagagaagtccatcactct 269 |||||||||||||||||||| Sbjct: 148918 ccagagaagtccatcactct 148937
>gb|DQ072581.1| Bos taurus pyruvate carboxylase (PC) gene, partial sequence Length = 8390 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 catttgcttgggaaagcagg 339 |||||||||||||||||||| Sbjct: 7409 catttgcttgggaaagcagg 7428
>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145 biosynthetic gene cluster, complete sequence Length = 126933 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 ggcggaggccgctcgccgcc 123 |||||||||||||||||||| Sbjct: 32744 ggcggaggccgctcgccgcc 32763
>gb|AC159505.7| Mus musculus 6 BAC RP23-81D20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 254457 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ccagagaagtccatcactct 269 |||||||||||||||||||| Sbjct: 18393 ccagagaagtccatcactct 18374
>emb|BX649319.8| Zebrafish DNA sequence from clone DKEYP-88E3 in linkage group 20, complete sequence Length = 108164 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 aaagcagggagtttctgagg 351 |||||||||||||||||||| Sbjct: 303 aaagcagggagtttctgagg 284
>gb|AC153902.4| Mus musculus 6 BAC RP23-5K15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208717 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 ccagagaagtccatcactct 269 |||||||||||||||||||| Sbjct: 66033 ccagagaagtccatcactct 66052 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,059,674 Number of Sequences: 3902068 Number of extensions: 3059674 Number of successful extensions: 60430 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60351 Number of HSP's gapped (non-prelim): 75 length of query: 352 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 330 effective length of database: 17,147,199,772 effective search space: 5658575924760 effective search space used: 5658575924760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)