Clone Name | bastl06g07 |
---|---|
Clone Library Name | barley_pub |
>gb|AC144759.11| Medicago truncatula clone mth2-15b21, complete sequence Length = 124666 Score = 46.1 bits (23), Expect = 0.084 Identities = 26/27 (96%) Strand = Plus / Minus Query: 42 tcctcccccttcgcctcgtcgccgccg 68 |||||||||| |||||||||||||||| Sbjct: 48783 tcctccccctccgcctcgtcgccgccg 48757
>gb|AC123596.13| Medicago truncatula clone mth1-17n5, complete sequence Length = 120055 Score = 46.1 bits (23), Expect = 0.084 Identities = 26/27 (96%) Strand = Plus / Minus Query: 42 tcctcccccttcgcctcgtcgccgccg 68 |||||||||| |||||||||||||||| Sbjct: 46124 tcctccccctccgcctcgtcgccgccg 46098
>emb|CT025839.2| Medicago truncatula chromosome 5 clone mth4-19c21, COMPLETE SEQUENCE Length = 210117 Score = 46.1 bits (23), Expect = 0.084 Identities = 26/27 (96%) Strand = Plus / Minus Query: 42 tcctcccccttcgcctcgtcgccgccg 68 |||||||||| |||||||||||||||| Sbjct: 48788 tcctccccctccgcctcgtcgccgccg 48762
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 110 cgcctcgtcgccgcccgcggccagcc 135 ||||||||||||| |||||||||||| Sbjct: 71239 cgcctcgtcgccgtccgcggccagcc 71214 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 110 cgcctcgtcgccgcccgcggccagcc 135 ||||||||||||| |||||||||||| Sbjct: 70888 cgcctcgtcgccgtccgcggccagcc 70863 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 110 cgcctcgtcgccgcccgcggccagcc 135 ||||||||||||| |||||||||||| Sbjct: 69784 cgcctcgtcgccgtccgcggccagcc 69759 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 110 cgcctcgtcgccgcccgcggccagcc 135 ||||||||||||| |||||||||||| Sbjct: 69433 cgcctcgtcgccgtccgcggccagcc 69408 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 110 cgcctcgtcgccgcccgcggccagcc 135 ||||||||||||| |||||||||||| Sbjct: 66991 cgcctcgtcgccgtccgcggccagcc 66966 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 111 gcctcgtcgccgcccgcggccagcc 135 |||||||||||| |||||||||||| Sbjct: 70653 gcctcgtcgccgtccgcggccagcc 70629 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 111 gcctcgtcgccgcccgcggccagcc 135 |||||||||||| |||||||||||| Sbjct: 67542 gcctcgtcgccgtccgcggccagcc 67518
>gb|AC132140.3| Mus musculus BAC clone RP23-82C19 from chromosome 19, complete sequence Length = 278583 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 179 gtatgtattaccgcagaaaaag 200 |||||||||||||||||||||| Sbjct: 150759 gtatgtattaccgcagaaaaag 150780
>gb|AC012176.8| Homo sapiens chromosome 16 clone RP11-206F18, complete sequence Length = 162224 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 312 actattaactttcctttctact 333 |||||||||||||||||||||| Sbjct: 65011 actattaactttcctttctact 64990
>gb|AC117984.2| Homo sapiens chromosome 16 clone CTD-2503H21, complete sequence Length = 190454 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 312 actattaactttcctttctact 333 |||||||||||||||||||||| Sbjct: 109919 actattaactttcctttctact 109940
>gb|AY138395.1| Stereum sanguinolentum chitin synthase 2 (CHS2) gene, partial cds Length = 718 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 cgcagaaaaaggaatcgtccc 210 ||||||||||||||||||||| Sbjct: 353 cgcagaaaaaggaatcgtccc 373
>emb|Z97353.3|HS90L6 Human DNA sequence from clone RP1-90L6 on chromosome 22q11.21-11.23, complete sequence Length = 190837 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 319 actttcctttctactctgccc 339 ||||||||||||||||||||| Sbjct: 162273 actttcctttctactctgccc 162293
>emb|AL356652.19| Human DNA sequence from clone RP11-42O4 on chromosome 20 Contains part of the gene for a novel glycosyl hydrolase family 47 protein and the PROCR gene for endothelial protein C receptor (EPCR), complete sequence Length = 50217 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 tccaactattaactttccttt 328 ||||||||||||||||||||| Sbjct: 5996 tccaactattaactttccttt 5976
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 gcctcgtcgccgcccgcggcc 131 ||||||||||||||||||||| Sbjct: 3566908 gcctcgtcgccgcccgcggcc 3566888
>gb|AC145557.3| Mus musculus BAC clone RP23-313I19 from chromosome 19, complete sequence Length = 226099 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 tcctcccccttcgcctcgtcgccg 65 |||||||||| ||||||||||||| Sbjct: 75595 tcctccccctccgcctcgtcgccg 75618
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 cgcctcgtcgccgccggcga 72 |||||||||||||||||||| Sbjct: 12042696 cgcctcgtcgccgccggcga 12042677
>gb|AC140193.3| Mus musculus BAC clone RP23-247C12 from chromosome 19, complete sequence Length = 173527 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 tcctcccccttcgcctcgtcgccg 65 |||||||||| ||||||||||||| Sbjct: 2984 tcctccccctccgcctcgtcgccg 2961
>ref|XM_850698.1| PREDICTED: Canis familiaris similar to N-myristoyltransferase 1, transcript variant 4 (LOC480494), mRNA Length = 1981 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 cagccctccccactcacctc 30 |||||||||||||||||||| Sbjct: 1209 cagccctccccactcacctc 1190
>gb|AC122434.2| Mus musculus BAC clone RP24-198G2 from chromosome 8, complete sequence Length = 168940 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tattaactttcctttctact 333 |||||||||||||||||||| Sbjct: 19713 tattaactttcctttctact 19694
>gb|U58974.2|MMU58974 Mus musculus proto-oncogene Frat1 (Frat1) mRNA, complete cds Length = 2464 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 tcctcccccttcgcctcgtcgccg 65 |||||||||| ||||||||||||| Sbjct: 108 tcctccccctccgcctcgtcgccg 85
>emb|AL356294.28| Human DNA sequence from clone RP11-49F20 on chromosome 13 Contains a glycogenin (GYG) pseudogene, complete sequence Length = 135345 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 tgttaccaaggagtgggaca 289 |||||||||||||||||||| Sbjct: 78936 tgttaccaaggagtgggaca 78917
>emb|AL162497.20| Human DNA sequence from clone RP11-313L9 on chromosome 13 Contains a novel gene, the IRS2 gene for insulin receptor substrate 2 and two CpG islands, complete sequence Length = 143409 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 tcgcctcgtcgccgcccgcg 128 |||||||||||||||||||| Sbjct: 125707 tcgcctcgtcgccgcccgcg 125726
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 cgcctcgtcgccgcccgcggccag 133 |||||||||||||| ||||||||| Sbjct: 261287 cgcctcgtcgccgcgcgcggccag 261264
>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14 Length = 344321 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 cgcctcgtcgccgcccgcggccag 133 |||||||||||||| ||||||||| Sbjct: 206979 cgcctcgtcgccgcgcgcggccag 206956
>emb|AJ575648.1|STH575648 Streptomyces thioluteus aureothin biosynthesis gene cluster (aurABCDEFGHI genes), strain HKI-22 Length = 29132 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cctcgtcgccgcccgcggcc 131 |||||||||||||||||||| Sbjct: 17274 cctcgtcgccgcccgcggcc 17293
>gb|AC113347.2| Homo sapiens chromosome 5 clone CTD-2533K21, complete sequence Length = 128152 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 tcccgaccccatcaataatctttc 230 |||| ||||||||||||||||||| Sbjct: 10320 tccccaccccatcaataatctttc 10297
>ref|NM_003749.2| Homo sapiens insulin receptor substrate 2 (IRS2), mRNA Length = 7014 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 tcgcctcgtcgccgcccgcg 128 |||||||||||||||||||| Sbjct: 695 tcgcctcgtcgccgcccgcg 676
>gb|AF312225.1|AF312225 Homo sapiens chromosome 2 map 2q37.1, complete sequence Length = 345102 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 gcgcctccagccctccccac 23 |||||||||||||||||||| Sbjct: 330435 gcgcctccagccctccccac 330454
>gb|AC008371.4| Drosophila melanogaster, chromosome 2L, region 21D-21D, BAC clone BACR22C14, complete sequence Length = 163461 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 agccatggacgttgcccccg 151 |||||||||||||||||||| Sbjct: 101168 agccatggacgttgcccccg 101149
>gb|AF288517.1|AF288517 Homo sapiens mutant insulin receptor substrate 2 (IRS2) gene, partial cds Length = 4283 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 tcgcctcgtcgccgcccgcg 128 |||||||||||||||||||| Sbjct: 319 tcgcctcgtcgccgcccgcg 300
>gb|AF385933.1|AF385933 Homo sapiens insulin receptor substrate 2 insertion mutant (IRS2) gene, partial cds Length = 4286 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 tcgcctcgtcgccgcccgcg 128 |||||||||||||||||||| Sbjct: 322 tcgcctcgtcgccgcccgcg 303
>gb|AF385932.1|AF385932 Homo sapiens insulin receptor substrate 2 insertion mutant (IRS2) gene, partial cds Length = 4289 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 tcgcctcgtcgccgcccgcg 128 |||||||||||||||||||| Sbjct: 325 tcgcctcgtcgccgcccgcg 306
>dbj|AK015680.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930502J22 product:frequently rearranged in advanced T-cell lymphomas, full insert sequence Length = 1186 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 tcctcccccttcgcctcgtcgccg 65 |||||||||| ||||||||||||| Sbjct: 187 tcctccccctccgcctcgtcgccg 164
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 cgcctcgtcgccgccggcga 72 |||||||||||||||||||| Sbjct: 12039459 cgcctcgtcgccgccggcga 12039440
>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20, complete sequence Length = 144969 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 cgcctcgtcgccgccggcga 72 |||||||||||||||||||| Sbjct: 63276 cgcctcgtcgccgccggcga 63257
>gb|AC068134.5| Homo sapiens BAC clone RP11-762N20 from 2, complete sequence Length = 181068 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 gcgcctccagccctccccac 23 |||||||||||||||||||| Sbjct: 23334 gcgcctccagccctccccac 23353
>gb|AC018445.21| Homo sapiens chromosome 18, clone RP11-196B3, complete sequence Length = 162265 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 ccccagcagacccctccggt 180 |||||||||||||||||||| Sbjct: 31004 ccccagcagacccctccggt 30985
>gb|AF322114.1|AF322114S1 Homo sapiens insulin receptor substrate 2 (IRS2) gene, exon 1 Length = 4283 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 tcgcctcgtcgccgcccgcg 128 |||||||||||||||||||| Sbjct: 319 tcgcctcgtcgccgcccgcg 300
>gb|AC027298.20|AC027298 Mus musculus 7 BAC RP23-266F22 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 201467 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 tcctcccccttcgcctcgtcgccg 65 |||||||||| ||||||||||||| Sbjct: 81125 tcctccccctccgcctcgtcgccg 81102
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 cccccttcgcctcgtcgccg 65 |||||||||||||||||||| Sbjct: 1969540 cccccttcgcctcgtcgccg 1969559
>emb|BX323551.8| Mouse DNA sequence from clone RP23-169N21 on chromosome 4, complete sequence Length = 59167 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 ctttcctttctactctgccc 339 |||||||||||||||||||| Sbjct: 32023 ctttcctttctactctgccc 32004
>dbj|AK102918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114B10, full insert sequence Length = 2381 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 cgcctcgtcgccgccggcga 72 |||||||||||||||||||| Sbjct: 1340 cgcctcgtcgccgccggcga 1321
>gb|AF148857.1|AF148857 Mus musculus FRAT3 (Frat3) mRNA, complete cds Length = 2639 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 tcctcccccttcgcctcgtcgccg 65 |||||||||| ||||||||||||| Sbjct: 213 tcctccccctccgcctcgtcgccg 190
>gb|AF073310.1|AF073310 Homo sapiens insulin receptor substrate-2 (IRS2) mRNA, complete cds Length = 6996 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 tcgcctcgtcgccgcccgcg 128 |||||||||||||||||||| Sbjct: 700 tcgcctcgtcgccgcccgcg 681
>gb|AE003590.3| Drosophila melanogaster chromosome 2L, section 1 of 83 of the complete sequence Length = 305900 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 agccatggacgttgcccccg 151 |||||||||||||||||||| Sbjct: 277146 agccatggacgttgcccccg 277127
>gb|AC004274.1|AC004274 Drosophila melanogaster DNA sequence (P1 DS07049 (D133)), complete sequence Length = 65196 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 agccatggacgttgcccccg 151 |||||||||||||||||||| Sbjct: 2608 agccatggacgttgcccccg 2627
>ref|NM_013788.1| Mus musculus paternally expressed 12 (Peg12), mRNA Length = 2639 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 tcctcccccttcgcctcgtcgccg 65 |||||||||| ||||||||||||| Sbjct: 213 tcctccccctccgcctcgtcgccg 190
>ref|NM_008043.2| Mus musculus frequently rearranged in advanced T-cell lymphomas (Frat1), mRNA Length = 2464 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 tcctcccccttcgcctcgtcgccg 65 |||||||||| ||||||||||||| Sbjct: 108 tcctccccctccgcctcgtcgccg 85
>dbj|AB050954.1| Homo sapiens irs-2 gene for insulin receptor substrate-2, partial cds Length = 2616 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 tcgcctcgtcgccgcccgcg 128 |||||||||||||||||||| Sbjct: 2580 tcgcctcgtcgccgcccgcg 2561 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,872,713 Number of Sequences: 3902068 Number of extensions: 2872713 Number of successful extensions: 59682 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59253 Number of HSP's gapped (non-prelim): 429 length of query: 387 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 365 effective length of database: 17,147,199,772 effective search space: 6258727916780 effective search space used: 6258727916780 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)