ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl06g03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB012228.1| Zea mays mRNA for phosphoenolpyruvate carboxylase, complete cds Length = 3319 Score = 323 bits (163), Expect = 2e-85 Identities = 223/243 (91%) Strand = Plus / Plus Query: 128 ggagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccga 187 ||||||||||||||| |||||||||||||||||||| || | |||||| ||||||||||| Sbjct: 203 ggagcggcaccagtccatcgacgcgcagctgcggctgctggcccccgggaaggtctccga 262 Query: 188 ggatgacaaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctcca 247 ||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 263 ggacgacaagctcgtcgagtacgacgccctcctcgtcgaccgcttcctcgacatcctcca 322 Query: 248 ggacttgcacggcccccacctgcgcgaattcgtgcaggagtgctacgagctctcggcgga 307 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 323 ggacctgcacggcccccacctgcgcgaattcgtgcaggagtgctacgagctctcggcgga 382 Query: 308 gtacgagaccgatcgggacgaggcccggatagccgagctcgggagcaagttcaccagtct 367 |||||||| ||| ||||| ||||| ||| | | |||||||||||||||| ||||||| || Sbjct: 383 gtacgagaacgaccgggatgaggctcggcttggcgagctcgggagcaagctcaccagcct 442 Query: 368 gcc 370 ||| Sbjct: 443 gcc 445
>emb|X55664.1|SVPEPCA Sorghum vulgare mRNA for phosphoenolpyruvate carboxylase (PEPC) Length = 3128 Score = 317 bits (160), Expect = 1e-83 Identities = 238/264 (90%) Strand = Plus / Plus Query: 128 ggagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccga 187 |||||||||||||||||||||||||||||||||||| || | |||||| ||||||||||| Sbjct: 6 ggagcggcaccagtcgatcgacgcgcagctgcggctgctggcccccgggaaggtctccga 65 Query: 188 ggatgacaaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctcca 247 ||| ||||| ||||| |||||||||||||| |||||||||||||||| ||||||||||| Sbjct: 66 ggacgacaagctcgtcgagtacgacgccctcctcgtcgaccgcttccttgacatcctcca 125 Query: 248 ggacttgcacggcccccacctgcgcgaattcgtgcaggagtgctacgagctctcggcgga 307 |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 126 ggacctgcacggcccccacctgcgcgaattcgtccaggagtgctacgagctctcggcgga 185 Query: 308 gtacgagaccgatcgggacgaggcccggatagccgagctcgggagcaagttcaccagtct 367 |||||||| ||| ||||| ||||| ||| | | |||||||||||||||| ||||||| || Sbjct: 186 gtacgagaacgaccgggatgaggctcggctcggcgagctcgggagcaagctcaccagcct 245 Query: 368 gccccccgctgattccatcgtcgt 391 ||| || | || ||||||||||| Sbjct: 246 gccgccgggggactccatcgtcgt 269
>gb|AY491400.1| Setaria italica C3 phosphoenolpyruvate carboxylase (ppc1) mRNA, complete cds Length = 2886 Score = 315 bits (159), Expect = 6e-83 Identities = 237/263 (90%) Strand = Plus / Plus Query: 129 gagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgag 188 ||||||||||||||||||||||||||||||||||| || | || ||||||||||||||| Sbjct: 10 gagcggcaccagtcgatcgacgcgcagctgcggctgctggcgccaggcaaggtctccgag 69 Query: 189 gatgacaaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccag 248 || ||||| ||||| |||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 70 gacgacaagctcgtcgagtacgacgccctcctcgtcgatcgcttcctcgacatcctccag 129 Query: 249 gacttgcacggcccccacctgcgcgaattcgtgcaggagtgctacgagctctcggcggag 308 ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 130 gacctgcacggcccgcacctccgcgaattcgtgcaggagtgctacgagctctcggcggag 189 Query: 309 tacgagaccgatcgggacgaggcccggatagccgagctcgggagcaagttcaccagtctg 368 ||||||| ||| || |||||||| ||| | | |||||||||||||||| ||||||| ||| Sbjct: 190 tacgagaacgaccgcgacgaggcgcggctcggcgagctcgggagcaagctcaccagcctg 249 Query: 369 ccccccgctgattccatcgtcgt 391 ||||||| || ||||||||||| Sbjct: 250 ccccccggggactccatcgtcgt 272
>gb|AY251482.1| Echinochloa crus-galli phosphoenolpyruvate carboxylase (ppc) mRNA, complete cds Length = 2886 Score = 299 bits (151), Expect = 3e-78 Identities = 235/263 (89%) Strand = Plus / Plus Query: 129 gagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgag 188 ||||||||||||||||||||||||||||||||||| || | || ||||||||||||||| Sbjct: 10 gagcggcaccagtcgatcgacgcgcagctgcggctgctggcgccgggcaaggtctccgag 69 Query: 189 gatgacaaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccag 248 || ||||| ||||| |||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 70 gacgacaagctcgtcgagtacgacgccctcctcgtcgaccgcttcctcgacatcctacag 129 Query: 249 gacttgcacggcccccacctgcgcgaattcgtgcaggagtgctacgagctctcggcggag 308 ||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 130 gacctgcacggcccgcacctccgcgaattcgtgcaggagtgctacgagctgtcggcggag 189 Query: 309 tacgagaccgatcgggacgaggcccggatagccgagctcgggagcaagttcaccagtctg 368 ||||||| ||| || |||||||| ||| | | |||||||||||||||| ||||||| ||| Sbjct: 190 tacgagaacgaccgcgacgaggcgcggctcggcgagctcgggagcaagctcaccagcctg 249 Query: 369 ccccccgctgattccatcgtcgt 391 ||||| | || ||||||||||| Sbjct: 250 cccccgggggagtccatcgtcgt 272
>gb|AF271995.1|AF271995 Oryza sativa phosphoenolpyruvate carboxylase mRNA, complete cds Length = 3307 Score = 291 bits (147), Expect = 9e-76 Identities = 258/295 (87%) Strand = Plus / Plus Query: 97 agatggcggcgccctcggggaaggccgcaatggagcggcaccagtcgatcgacgcgcagc 156 ||||||| ||| || | |||||||| || ||||||||||||||||||||||||||||||| Sbjct: 159 agatggccgcggccgccgggaaggcggcgatggagcggcaccagtcgatcgacgcgcagc 218 Query: 157 tgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtggagtacgacgccc 216 ||||||| |||| || || ||||| |||||||| ||||| ||||| ||||||||||||| Sbjct: 219 tgcggctgctcgcgccggggaaggtatccgaggacgacaagctcgtcgagtacgacgccc 278 Query: 217 ttatcgtcgaccgcttcctcgacatcctccaggacttgcacggcccccacctgcgcgaat 276 | |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| Sbjct: 279 tcctcgtcgaccgcttcctcgacatcctccaggacctgcacggccctcacctccgcgaat 338 Query: 277 tcgtgcaggagtgctacgagctctcggcggagtacgagaccgatcgggacgaggcccgga 336 |||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||| Sbjct: 339 tcgtgcaggagtgctacgagctgtcggcggagtacgagaacgacagggacgaggcgcggc 398 Query: 337 tagccgagctcgggagcaagttcaccagtctgccccccgctgattccatcgtcgt 391 | | |||||| ||||| ||| ||||||| ||||| || | || ||||||||||| Sbjct: 399 tcgacgagctggggaggaagctcaccagcctgccgccgggggactccatcgtcgt 453
>dbj|AK065425.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013011N21, full insert sequence Length = 3809 Score = 291 bits (147), Expect = 9e-76 Identities = 258/295 (87%) Strand = Plus / Plus Query: 97 agatggcggcgccctcggggaaggccgcaatggagcggcaccagtcgatcgacgcgcagc 156 ||||||| ||| || | |||||||| || ||||||||||||||||||||||||||||||| Sbjct: 169 agatggccgcggccgccgggaaggcggcgatggagcggcaccagtcgatcgacgcgcagc 228 Query: 157 tgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtggagtacgacgccc 216 ||||||| |||| || || ||||| |||||||| ||||| ||||| ||||||||||||| Sbjct: 229 tgcggctgctcgcgccggggaaggtatccgaggacgacaagctcgtcgagtacgacgccc 288 Query: 217 ttatcgtcgaccgcttcctcgacatcctccaggacttgcacggcccccacctgcgcgaat 276 | |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| Sbjct: 289 tcctcgtcgaccgcttcctcgacatcctccaggacctgcacggccctcacctccgcgaat 348 Query: 277 tcgtgcaggagtgctacgagctctcggcggagtacgagaccgatcgggacgaggcccgga 336 |||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||| Sbjct: 349 tcgtgcaggagtgctacgagctgtcggcggagtacgagaacgacagggacgaggcgcggc 408 Query: 337 tagccgagctcgggagcaagttcaccagtctgccccccgctgattccatcgtcgt 391 | | |||||| ||||| ||| ||||||| ||||| || | || ||||||||||| Sbjct: 409 tcgacgagctggggaggaagctcaccagcctgccgccgggggactccatcgtcgt 463
>dbj|AK065029.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001G17, full insert sequence Length = 3310 Score = 291 bits (147), Expect = 9e-76 Identities = 258/295 (87%) Strand = Plus / Plus Query: 97 agatggcggcgccctcggggaaggccgcaatggagcggcaccagtcgatcgacgcgcagc 156 ||||||| ||| || | |||||||| || ||||||||||||||||||||||||||||||| Sbjct: 169 agatggccgcggccgccgggaaggcggcgatggagcggcaccagtcgatcgacgcgcagc 228 Query: 157 tgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtggagtacgacgccc 216 ||||||| |||| || || ||||| |||||||| ||||| ||||| ||||||||||||| Sbjct: 229 tgcggctgctcgcgccggggaaggtatccgaggacgacaagctcgtcgagtacgacgccc 288 Query: 217 ttatcgtcgaccgcttcctcgacatcctccaggacttgcacggcccccacctgcgcgaat 276 | |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| Sbjct: 289 tcctcgtcgaccgcttcctcgacatcctccaggacctgcacggccctcacctccgcgaat 348 Query: 277 tcgtgcaggagtgctacgagctctcggcggagtacgagaccgatcgggacgaggcccgga 336 |||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||| Sbjct: 349 tcgtgcaggagtgctacgagctgtcggcggagtacgagaacgacagggacgaggcgcggc 408 Query: 337 tagccgagctcgggagcaagttcaccagtctgccccccgctgattccatcgtcgt 391 | | |||||| ||||| ||| ||||||| ||||| || | || ||||||||||| Sbjct: 409 tcgacgagctggggaggaagctcaccagcctgccgccgggggactccatcgtcgt 463
>dbj|AK106451.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-F01, full insert sequence Length = 1540 Score = 285 bits (144), Expect = 5e-74 Identities = 237/268 (88%) Strand = Plus / Plus Query: 97 agatggcggcgccctcggggaaggccgcaatggagcggcaccagtcgatcgacgcgcagc 156 ||||||| ||| || | |||||||| || ||||||||||||||||||||||||||||||| Sbjct: 162 agatggccgcggccgccgggaaggcggcgatggagcggcaccagtcgatcgacgcgcagc 221 Query: 157 tgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtggagtacgacgccc 216 ||||||| |||| || || ||||| |||||||| ||||| ||||| ||||||||||||| Sbjct: 222 tgcggctgctcgcgccggggaaggtatccgaggacgacaagctcgtcgagtacgacgccc 281 Query: 217 ttatcgtcgaccgcttcctcgacatcctccaggacttgcacggcccccacctgcgcgaat 276 | |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| Sbjct: 282 tcctcgtcgaccgcttcctcgacatcctccaggacctgcacggccctcacctccgcgaat 341 Query: 277 tcgtgcaggagtgctacgagctctcggcggagtacgagaccgatcgggacgaggcccgga 336 |||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||| Sbjct: 342 tcgtgcaggagtgctacgagctgtcggcggagtacgagaacgacagggacgaggcgcggc 401 Query: 337 tagccgagctcgggagcaagttcaccag 364 | | |||||| ||||| ||| ||||||| Sbjct: 402 tcgacgagctggggaggaagctcaccag 429
>gb|AY109352.1| Zea mays CL1793_1 mRNA sequence Length = 3349 Score = 272 bits (137), Expect = 8e-70 Identities = 214/243 (88%) Strand = Plus / Plus Query: 128 ggagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccga 187 ||||||||||||||| |||||||||||||||||||| || | || ||||||||||| Sbjct: 203 ggagcggcaccagtccatcgacgcgcagctgcggctgctggnnnnngggaaggtctccga 262 Query: 188 ggatgacaaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctcca 247 ||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 263 ggacgacaagctcgtcgagtacgacgccctcctcgtcgaccgcttcctcgacatcctcca 322 Query: 248 ggacttgcacggcccccacctgcgcgaattcgtgcaggagtgctacgagctctcggcgga 307 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 323 ggacctgcacggnnnnnacctgcgcgaattcgtgcaggagtgctacgagctctcggcgga 382 Query: 308 gtacgagaccgatcgggacgaggcccggatagccgagctcgggagcaagttcaccagtct 367 |||||||| ||| ||||| ||||| ||| | | |||||||||||||||| ||||||| || Sbjct: 383 gtacgagaacgaccgggatgaggctcggcttggcgagctcgggagcaagctcaccagcct 442 Query: 368 gcc 370 ||| Sbjct: 443 gcc 445
>emb|X65137.1|SVPEPCGX S.vulgare pepC gene for PEP carboxylase Length = 7586 Score = 216 bits (109), Expect = 4e-53 Identities = 142/153 (92%) Strand = Plus / Plus Query: 128 ggagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccga 187 |||||||||||||||||||||||||||||||||||| || | |||||| ||||||||||| Sbjct: 844 ggagcggcaccagtcgatcgacgcgcagctgcggctgctggcccccgggaaggtctccga 903 Query: 188 ggatgacaaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctcca 247 ||| ||||| ||||| |||||||||||||| |||||||||||||||| ||||||||||| Sbjct: 904 ggacgacaagctcgtcgagtacgacgccctcctcgtcgaccgcttccttgacatcctcca 963 Query: 248 ggacttgcacggcccccacctgcgcgaattcgt 280 |||| |||||||||||||||||||||||||||| Sbjct: 964 ggacctgcacggcccccacctgcgcgaattcgt 996 Score = 107 bits (54), Expect = 3e-20 Identities = 96/110 (87%) Strand = Plus / Plus Query: 282 caggagtgctacgagctctcggcggagtacgagaccgatcgggacgaggcccggatagcc 341 |||||||||||||||||||||||||||||||||| ||| ||||| ||||| ||| | | | Sbjct: 1102 caggagtgctacgagctctcggcggagtacgagaacgaccgggatgaggctcggctcggc 1161 Query: 342 gagctcgggagcaagttcaccagtctgccccccgctgattccatcgtcgt 391 ||||||||||||||| ||||||| ||||| || | || ||||||||||| Sbjct: 1162 gagctcgggagcaagctcaccagcctgccgccgggggactccatcgtcgt 1211
>emb|X63869.1|ZMPEPC2A Z.mays pepcZm2A gene for phosphoenolpyruvate carboxylase, 5' region Length = 601 Score = 212 bits (107), Expect = 6e-52 Identities = 140/151 (92%) Strand = Plus / Plus Query: 128 ggagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccga 187 ||||||||||||||| |||||||||||||||||||| || | |||||| ||||||||||| Sbjct: 451 ggagcggcaccagtccatcgacgcgcagctgcggctgctggcccccgggaaggtctccga 510 Query: 188 ggatgacaaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctcca 247 ||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 511 ggacgacaagctcgtcgagtacgacgccctcctcgtcgaccgcttcctcgacatcctcca 570 Query: 248 ggacttgcacggcccccacctgcgcgaattc 278 |||| |||||||||||||||||||||||||| Sbjct: 571 ggacctgcacggcccccacctgcgcgaattc 601
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 206 bits (104), Expect = 4e-50 Identities = 164/184 (89%) Strand = Plus / Minus Query: 97 agatggcggcgccctcggggaaggccgcaatggagcggcaccagtcgatcgacgcgcagc 156 ||||||| ||| || | |||||||| || ||||||||||||||||||||||||||||||| Sbjct: 8183099 agatggccgcggccgccgggaaggcggcgatggagcggcaccagtcgatcgacgcgcagc 8183040 Query: 157 tgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtggagtacgacgccc 216 ||||||| |||| || || ||||| |||||||| ||||| ||||| ||||||||||||| Sbjct: 8183039 tgcggctgctcgcgccggggaaggtatccgaggacgacaagctcgtcgagtacgacgccc 8182980 Query: 217 ttatcgtcgaccgcttcctcgacatcctccaggacttgcacggcccccacctgcgcgaat 276 | |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| Sbjct: 8182979 tcctcgtcgaccgcttcctcgacatcctccaggacctgcacggccctcacctccgcgaat 8182920 Query: 277 tcgt 280 |||| Sbjct: 8182919 tcgt 8182916 Score = 89.7 bits (45), Expect = 6e-15 Identities = 96/113 (84%) Strand = Plus / Minus Query: 279 gtgcaggagtgctacgagctctcggcggagtacgagaccgatcgggacgaggcccggata 338 |||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||| | Sbjct: 8182816 gtgcaggagtgctacgagctgtcggcggagtacgagaacgacagggacgaggcgcggctc 8182757 Query: 339 gccgagctcgggagcaagttcaccagtctgccccccgctgattccatcgtcgt 391 | |||||| ||||| ||| ||||||| ||||| || | || ||||||||||| Sbjct: 8182756 gacgagctggggaggaagctcaccagcctgccgccgggggactccatcgtcgt 8182704
>dbj|AP004117.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1134_F06 Length = 130968 Score = 206 bits (104), Expect = 4e-50 Identities = 164/184 (89%) Strand = Plus / Minus Query: 97 agatggcggcgccctcggggaaggccgcaatggagcggcaccagtcgatcgacgcgcagc 156 ||||||| ||| || | |||||||| || ||||||||||||||||||||||||||||||| Sbjct: 15245 agatggccgcggccgccgggaaggcggcgatggagcggcaccagtcgatcgacgcgcagc 15186 Query: 157 tgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtggagtacgacgccc 216 ||||||| |||| || || ||||| |||||||| ||||| ||||| ||||||||||||| Sbjct: 15185 tgcggctgctcgcgccggggaaggtatccgaggacgacaagctcgtcgagtacgacgccc 15126 Query: 217 ttatcgtcgaccgcttcctcgacatcctccaggacttgcacggcccccacctgcgcgaat 276 | |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| Sbjct: 15125 tcctcgtcgaccgcttcctcgacatcctccaggacctgcacggccctcacctccgcgaat 15066 Query: 277 tcgt 280 |||| Sbjct: 15065 tcgt 15062 Score = 89.7 bits (45), Expect = 6e-15 Identities = 96/113 (84%) Strand = Plus / Minus Query: 279 gtgcaggagtgctacgagctctcggcggagtacgagaccgatcgggacgaggcccggata 338 |||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||| | Sbjct: 14962 gtgcaggagtgctacgagctgtcggcggagtacgagaacgacagggacgaggcgcggctc 14903 Query: 339 gccgagctcgggagcaagttcaccagtctgccccccgctgattccatcgtcgt 391 | |||||| ||||| ||| ||||||| ||||| || | || ||||||||||| Sbjct: 14902 gacgagctggggaggaagctcaccagcctgccgccgggggactccatcgtcgt 14850
>gb|AF495586.1| Setaria italica putative C4 phosphoenolpyruvate carboxylase (ppc) mRNA, complete cds Length = 3214 Score = 170 bits (86), Expect = 2e-39 Identities = 167/194 (86%) Strand = Plus / Plus Query: 134 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 193 |||||| || |||||||||||||| |||||||| | |||||||||||||||||||| || Sbjct: 87 gcaccactccatcgacgcgcagctccggctcctggcacccggcaaggtctccgaggacga 146 Query: 194 caaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccaggactt 253 ||| ||||| |||||||||||||| || |||||||||||||||||||| |||||||| | Sbjct: 147 caagctcgtcgagtacgacgccctcctcatcgaccgcttcctcgacatcttccaggacct 206 Query: 254 gcacggcccccacctgcgcgaattcgtgcaggagtgctacgagctctcggcggagtacga 313 |||||||| || | || |||||||| ||||||||||||||| | ||||||||||||| Sbjct: 207 ccacggcccaaacatccgtgaattcgtccaggagtgctacgaggtggcggcggagtacga 266 Query: 314 gaccgatcgggacg 327 | |||||| |||| Sbjct: 267 gcgcgatcgcgacg 280
>gb|AY103747.1| Zea mays PCO070206 mRNA sequence Length = 3289 Score = 137 bits (69), Expect = 3e-29 Identities = 153/181 (84%) Strand = Plus / Plus Query: 134 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 193 |||||| || |||||||||||||| || | || ||||| ||||||||||||||||| || Sbjct: 116 gcaccactccatcgacgcgcagctccgtcagctggtcccaggcaaggtctccgaggacga 175 Query: 194 caaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccaggactt 253 ||| ||| | |||||||| || || ||||||||||||||||| |||||||||||||| | Sbjct: 176 caagctcatcgagtacgatgcgctgctcgtcgaccgcttcctcaacatcctccaggacct 235 Query: 254 gcacggcccccacctgcgcgaattcgtgcaggagtgctacgagctctcggcggagtacga 313 ||||| ||| ||| |||||||| || ||||||||||||||| ||||||| || ||||| Sbjct: 236 ccacgggcccagccttcgcgaatttgtccaggagtgctacgaggtctcggccgactacga 295 Query: 314 g 314 | Sbjct: 296 g 296
>emb|X15238.1|ZMPEPC1 Maize mRNA for phosphoenolpyruvate carboxylase (EC 4.1.1.31) Length = 3265 Score = 129 bits (65), Expect = 7e-27 Identities = 152/181 (83%) Strand = Plus / Plus Query: 134 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 193 |||||| || |||||||||||||| || | || ||||| ||||||||||||||||| || Sbjct: 116 gcaccactccatcgacgcgcagctccgtcagctggtcccaggcaaggtctccgaggacga 175 Query: 194 caaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccaggactt 253 ||| ||| | |||||||| || || ||||||||||||||||| |||||||||||||| | Sbjct: 176 caagctcatcgagtacgatgcgctgctcgtcgaccgcttcctcaacatcctccaggacct 235 Query: 254 gcacggcccccacctgcgcgaattcgtgcaggagtgctacgagctctcggcggagtacga 313 ||||| ||| ||| |||||||| || ||||||||||||||| |||| || || ||||| Sbjct: 236 ccacgggcccagccttcgcgaatttgtccaggagtgctacgaggtctcagccgactacga 295 Query: 314 g 314 | Sbjct: 296 g 296
>gb|DQ204769.1| Zea mays cultivar Bijoy Composite phosphoenolpyruvate carboxylase mRNA, partial cds Length = 558 Score = 125 bits (63), Expect = 1e-25 Identities = 138/163 (84%) Strand = Plus / Plus Query: 134 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 193 |||||| || |||||||||||||| || | || ||||| ||||||||||||||||| || Sbjct: 36 gcaccactccatcgacgcgcagctccgtcagctggtcccaggcaaggtctccgaggacga 95 Query: 194 caaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccaggactt 253 ||| ||| | |||||||| || || ||||||||||||||||| |||||||||||||| | Sbjct: 96 caagctcatcgagtacgatgcgctgctcgtcgaccgcttcctcaacatcctccaggacct 155 Query: 254 gcacggcccccacctgcgcgaattcgtgcaggagtgctacgag 296 ||||| ||| ||| |||||||| || ||||||||||||||| Sbjct: 156 ccacgggcccagccttcgcgaatttgtccaggagtgctacgag 198
>emb|AJ536629.1|ZMA536629 Zea mays mRNA for phosphoenolpyruvate carboxylase (ppc1 gene), clone pM500 Length = 2913 Score = 125 bits (63), Expect = 1e-25 Identities = 138/163 (84%) Strand = Plus / Plus Query: 134 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 193 |||||| || |||||||||||||| || | || ||||| ||||||||||||||||| || Sbjct: 36 gcaccactccatcgacgcgcagctccgtcagctggtcccaggcaaggtctccgaggacga 95 Query: 194 caaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccaggactt 253 ||| ||| | |||||||| || || ||||||||||||||||| |||||||||||||| | Sbjct: 96 caagctcatcgagtacgatgcgctgctcgtcgaccgcttcctcaacatcctccaggacct 155 Query: 254 gcacggcccccacctgcgcgaattcgtgcaggagtgctacgag 296 ||||| ||| ||| |||||||| || ||||||||||||||| Sbjct: 156 ccacgggcccagccttcgcgaatttgtccaggagtgctacgag 198
>emb|X07168.1|ZMPEPC5A Maize MRNA for phosphoenolpyruvate carboxylase 5'-end (pM500, pM541, pM499) Length = 330 Score = 125 bits (63), Expect = 1e-25 Identities = 138/163 (84%) Strand = Plus / Plus Query: 134 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 193 |||||| || |||||||||||||| || | || ||||| ||||||||||||||||| || Sbjct: 118 gcaccactccatcgacgcgcagctccgtcagctggtcccaggcaaggtctccgaggacga 177 Query: 194 caaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccaggactt 253 ||| ||| | |||||||| || || ||||||||||||||||| |||||||||||||| | Sbjct: 178 caagctcatcgagtacgatgcgctgctcgtcgaccgcttcctcaacatcctccaggacct 237 Query: 254 gcacggcccccacctgcgcgaattcgtgcaggagtgctacgag 296 ||||| ||| ||| |||||||| || ||||||||||||||| Sbjct: 238 ccacgggcccagccttcgcgaatttgtccaggagtgctacgag 280
>emb|AJ007705.1|TAE7705 Triticum aestivum PEPC gene Length = 5845 Score = 115 bits (58), Expect = 1e-22 Identities = 97/110 (88%) Strand = Plus / Plus Query: 140 gtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaact 199 |||||||||||||||||||||||| |||||||||| |||||| |||||||| ||||| || Sbjct: 446 gtcgatcgacgcgcagctgcggctgctcgtccccgccaaggtgtccgaggacgacaagct 505 Query: 200 cgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccagg 249 | | ||||||||||| || || ||||||||||||||||| |||| |||| Sbjct: 506 cattgagtacgacgcgctcctcctcgaccgcttcctcgacgtcctgcagg 555
>emb|X17379.1|SVPEPC Sorghum vulgare mRNA for phosphoenolpyruvate involved in C4 photosynthesis (EC 4.1.1.31) Length = 3192 Score = 109 bits (55), Expect = 7e-21 Identities = 153/186 (82%), Gaps = 6/186 (3%) Strand = Plus / Plus Query: 129 gagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgag 188 ||||||||||| || |||||||||||||| || ||||| |||||||||||||||||| Sbjct: 41 gagcggcaccactccatcgacgcgcagctccgtgccctcgcacccggcaaggtctccgag 100 Query: 189 gatgacaaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccag 248 || ||| | |||| |||||||| ||||||||||||||||||||||||||||| Sbjct: 101 gag------ctcatccagtatgacgccctgctcgtcgaccgcttcctcgacatcctccag 154 Query: 249 gacttgcacggcccccacctgcgcgaattcgtgcaggagtgctacgagctctcggcggag 308 ||| | || |||||| ||| |||||||| || ||||||||||||||| | ||||| || Sbjct: 155 gacctccatggccccagccttcgcgaatttgtccaggagtgctacgaggtgtcggccgac 214 Query: 309 tacgag 314 |||||| Sbjct: 215 tacgag 220
>emb|X59925.1|SVPEPCG S.vulgare PEPC gene for phosphoenolpyruvate carboxylase Length = 6018 Score = 105 bits (53), Expect = 1e-19 Identities = 104/121 (85%) Strand = Plus / Plus Query: 140 gtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaact 199 |||||||||||||||||||||| | || || || || |||||||| ||||| ||||| || Sbjct: 671 gtcgatcgacgcgcagctgcggatgctggtgccggggaaggtctcggaggacgacaagct 730 Query: 200 cgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccaggacttgcacgg 259 | | ||||||||||| || || ||||||||||||||||||||||||||||| | ||||| Sbjct: 731 catcgagtacgacgcgctcctcctcgaccgcttcctcgacatcctccaggacctccacgg 790 Query: 260 c 260 | Sbjct: 791 c 791
>gb|S60262.1| pepcZm1=phosphoenolpyruvate carboxylase {5' region} [corn, protoplast, Genomic, 813 nt] Length = 813 Score = 103 bits (52), Expect = 4e-19 Identities = 121/144 (84%) Strand = Plus / Plus Query: 134 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 193 |||||| || |||||||||||||| || | || ||||| ||||||||||||||||| || Sbjct: 669 gcaccactccatcgacgcgcagctccgtcagctggtcccaggcaaggtctccgaggacga 728 Query: 194 caaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccaggactt 253 ||| ||| | |||||||| || || ||||||||||||||||| |||||||||||||| | Sbjct: 729 caagctcatcgagtacgatgcgctgctcgtcgaccgcttcctcaacatcctccaggacct 788 Query: 254 gcacggcccccacctgcgcgaatt 277 ||||| ||| ||| |||||||| Sbjct: 789 ccacgggcccagccttcgcgaatt 812
>emb|X15239.1|ZMPEPC1G Maize PEPC1 gene for phosphoenolpyruvate carboxylase (EC 4.1.1.31) Length = 6151 Score = 103 bits (52), Expect = 4e-19 Identities = 121/144 (84%) Strand = Plus / Plus Query: 134 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 193 |||||| || |||||||||||||| || | || ||||| ||||||||||||||||| || Sbjct: 780 gcaccactccatcgacgcgcagctccgtcagctggtcccaggcaaggtctccgaggacga 839 Query: 194 caaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccaggactt 253 ||| ||| | |||||||| || || ||||||||||||||||| |||||||||||||| | Sbjct: 840 caagctcatcgagtacgatgcgctgctcgtcgaccgcttcctcaacatcctccaggacct 899 Query: 254 gcacggcccccacctgcgcgaatt 277 ||||| ||| ||| |||||||| Sbjct: 900 ccacgggcccagccttcgcgaatt 923
>emb|X15642.1|ZMPEP Z.mays gene for phosphoenolpyruvate carboxylase (EC 4.1.1.31) Length = 6781 Score = 103 bits (52), Expect = 4e-19 Identities = 121/144 (84%) Strand = Plus / Plus Query: 134 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 193 |||||| || |||||||||||||| || | || ||||| ||||||||||||||||| || Sbjct: 1332 gcaccactccatcgacgcgcagctccgtcagctggtcccaggcaaggtctccgaggacga 1391 Query: 194 caaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccaggactt 253 ||| ||| | |||||||| || || ||||||||||||||||| |||||||||||||| | Sbjct: 1392 caagctcatcgagtacgatgcgctgctcgtcgaccgcttcctcaacatcctccaggacct 1451 Query: 254 gcacggcccccacctgcgcgaatt 277 ||||| ||| ||| |||||||| Sbjct: 1452 ccacgggcccagccttcgcgaatt 1475
>emb|AJ293346.1|SOF293346 Saccharum officinarum mRNA for putative C4 phosphoenolpyruvate carboxylase (PEPC gene) Length = 3067 Score = 101 bits (51), Expect = 2e-18 Identities = 152/186 (81%), Gaps = 6/186 (3%) Strand = Plus / Plus Query: 129 gagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgag 188 ||||||||||| || |||||||||||||| || ||| | ||||||||||||||||||| Sbjct: 10 gagcggcaccactccatcgacgcgcagctccgtgccctggcccccggcaaggtctccgag 69 Query: 189 gatgacaaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccag 248 || ||| | ||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 70 gag------ctcatccagtacgacgccctgctcgtcgaccgtttcctcgacatcctccag 123 Query: 249 gacttgcacggcccccacctgcgcgaattcgtgcaggagtgctacgagctctcggcggag 308 ||| | || ||||| ||| |||||||| || ||||||||||||||| | ||||| || Sbjct: 124 gacctccatggccctagccttcgcgaatttgtccaggagtgctacgaggtgtcggccgat 183 Query: 309 tacgag 314 |||||| Sbjct: 184 tacgag 189
>gb|AF268091.1|AF268091 Chloris gayana phosphoenolpyruvate carboxylase (ppc) mRNA, complete cds Length = 3137 Score = 95.6 bits (48), Expect = 1e-16 Identities = 147/180 (81%) Strand = Plus / Plus Query: 134 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 193 |||||| || || ||||||||||| ||||||| | |||||||||||||| ||||| || Sbjct: 40 gcaccactccattgacgcgcagctcaggctcctggctcccggcaaggtctcggaggacga 99 Query: 194 caaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccaggactt 253 ||| ||||| |||||||| ||||| || ||||||||||||| |||||||||||| || | Sbjct: 100 caagctcgtcgagtacgatgccctgctcatcgaccgcttcctggacatcctccagaacct 159 Query: 254 gcacggcccccacctgcgcgaattcgtgcaggagtgctacgagctctcggcggagtacga 313 || ||| | ||| || ||| |||| ||||||||||||||| | || || |||||||| Sbjct: 160 ccatggctcagccctccgtgaactcgtccaggagtgctacgagatgtccgccgagtacga 219
>gb|AY135709.1| Saccharum hybrid cultivar putative C4 phosphoenolpyruvate carboxylase mRNA, complete cds Length = 3205 Score = 93.7 bits (47), Expect = 4e-16 Identities = 151/186 (81%), Gaps = 6/186 (3%) Strand = Plus / Plus Query: 129 gagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgag 188 ||||||||||| || |||||||||||||| || ||| | ||||||||||||||||||| Sbjct: 105 gagcggcaccactccatcgacgcgcagctccgtgccctggcccccggcaaggtctccgag 164 Query: 189 gatgacaaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccag 248 || ||| | ||||||||||||| ||| |||||| |||||||||||||||||| Sbjct: 165 gag------ctcatccagtacgacgccctgctcgccgaccgtttcctcgacatcctccag 218 Query: 249 gacttgcacggcccccacctgcgcgaattcgtgcaggagtgctacgagctctcggcggag 308 ||| | || ||||| ||| |||||||| || ||||||||||||||| | ||||| || Sbjct: 219 gacctccatggccctagccttcgcgaatttgtccaggagtgctacgaggtgtcggccgat 278 Query: 309 tacgag 314 |||||| Sbjct: 279 tacgag 284
>ref|NM_188892.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3158 Score = 91.7 bits (46), Expect = 2e-15 Identities = 105/122 (86%), Gaps = 2/122 (1%) Strand = Plus / Plus Query: 140 gtcgatcgacgcgcagctgcggctcctcgtccccggc-aaggtctccgaggatgacaaac 198 |||||||||||||||||||||| | || | | ||||| ||| | || ||||| ||||| | Sbjct: 82 gtcgatcgacgcgcagctgcggatgctgg-cgccggcgaagctgtcggaggacgacaagc 140 Query: 199 tcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccaggacttgcacg 258 | ||||||||||||||||| || ||||||||||||||||||||||||||||| | |||| Sbjct: 141 tggtggagtacgacgccctcctcctcgaccgcttcctcgacatcctccaggacctccacg 200 Query: 259 gc 260 || Sbjct: 201 gc 202
>ref|XM_507204.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1484_G09.129-1 mRNA Length = 3539 Score = 91.7 bits (46), Expect = 2e-15 Identities = 105/122 (86%), Gaps = 2/122 (1%) Strand = Plus / Plus Query: 140 gtcgatcgacgcgcagctgcggctcctcgtccccggc-aaggtctccgaggatgacaaac 198 |||||||||||||||||||||| | || | | ||||| ||| | || ||||| ||||| | Sbjct: 347 gtcgatcgacgcgcagctgcggatgctgg-cgccggcgaagctgtcggaggacgacaagc 405 Query: 199 tcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccaggacttgcacg 258 | ||||||||||||||||| || ||||||||||||||||||||||||||||| | |||| Sbjct: 406 tggtggagtacgacgccctcctcctcgaccgcttcctcgacatcctccaggacctccacg 465 Query: 259 gc 260 || Sbjct: 466 gc 467
>emb|X07171.1|ZMPEPC5B Maize mRNA for phosphoenolpyruvate carboxylase 5'end (pM530) Length = 168 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Plus Query: 177 aaggtctccgaggatgacaaactcgtggagtacgacgcccttatcgtcgaccgcttcctc 236 |||||||||||||| ||||| ||| | |||||||| || || ||||||||||||||||| Sbjct: 1 aaggtctccgaggacgacaagctcatcgagtacgatgcgctgctcgtcgaccgcttcctc 60 Query: 237 gacatcctccaggacttgcacggcccccacctgcgcgaattcgtgcaggagtgctacgag 296 ||||||| |||||| | ||||| || ||| |||||||| || ||||||||||||||| Sbjct: 61 aacatccttcaggacctccacgggccaagccttcgcgaatttgtccaggagtgctacgag 120 Query: 297 ctctcggcggagtacgag 314 | ||||| || |||||| Sbjct: 121 gtatcggccgactacgag 138
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 91.7 bits (46), Expect = 2e-15 Identities = 105/122 (86%), Gaps = 2/122 (1%) Strand = Plus / Minus Query: 140 gtcgatcgacgcgcagctgcggctcctcgtccccggc-aaggtctccgaggatgacaaac 198 |||||||||||||||||||||| | || | | ||||| ||| | || ||||| ||||| | Sbjct: 16962979 gtcgatcgacgcgcagctgcggatgctgg-cgccggcgaagctgtcggaggacgacaagc 16962921 Query: 199 tcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccaggacttgcacg 258 | ||||||||||||||||| || ||||||||||||||||||||||||||||| | |||| Sbjct: 16962920 tggtggagtacgacgccctcctcctcgaccgcttcctcgacatcctccaggacctccacg 16962861 Query: 259 gc 260 || Sbjct: 16962860 gc 16962859
>dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1484_G09 Length = 124695 Score = 91.7 bits (46), Expect = 2e-15 Identities = 105/122 (86%), Gaps = 2/122 (1%) Strand = Plus / Minus Query: 140 gtcgatcgacgcgcagctgcggctcctcgtccccggc-aaggtctccgaggatgacaaac 198 |||||||||||||||||||||| | || | | ||||| ||| | || ||||| ||||| | Sbjct: 109990 gtcgatcgacgcgcagctgcggatgctgg-cgccggcgaagctgtcggaggacgacaagc 109932 Query: 199 tcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccaggacttgcacg 258 | ||||||||||||||||| || ||||||||||||||||||||||||||||| | |||| Sbjct: 109931 tggtggagtacgacgccctcctcctcgaccgcttcctcgacatcctccaggacctccacg 109872 Query: 259 gc 260 || Sbjct: 109871 gc 109870
>dbj|AK073703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055B18, full insert sequence Length = 3538 Score = 91.7 bits (46), Expect = 2e-15 Identities = 105/122 (86%), Gaps = 2/122 (1%) Strand = Plus / Plus Query: 140 gtcgatcgacgcgcagctgcggctcctcgtccccggc-aaggtctccgaggatgacaaac 198 |||||||||||||||||||||| | || | | ||||| ||| | || ||||| ||||| | Sbjct: 346 gtcgatcgacgcgcagctgcggatgctgg-cgccggcgaagctgtcggaggacgacaagc 404 Query: 199 tcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccaggacttgcacg 258 | ||||||||||||||||| || ||||||||||||||||||||||||||||| | |||| Sbjct: 405 tggtggagtacgacgccctcctcctcgaccgcttcctcgacatcctccaggacctccacg 464 Query: 259 gc 260 || Sbjct: 465 gc 466
>dbj|AK067572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108G24, full insert sequence Length = 3158 Score = 91.7 bits (46), Expect = 2e-15 Identities = 105/122 (86%), Gaps = 2/122 (1%) Strand = Plus / Plus Query: 140 gtcgatcgacgcgcagctgcggctcctcgtccccggc-aaggtctccgaggatgacaaac 198 |||||||||||||||||||||| | || | | ||||| ||| | || ||||| ||||| | Sbjct: 82 gtcgatcgacgcgcagctgcggatgctgg-cgccggcgaagctgtcggaggacgacaagc 140 Query: 199 tcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccaggacttgcacg 258 | ||||||||||||||||| || ||||||||||||||||||||||||||||| | |||| Sbjct: 141 tggtggagtacgacgccctcctcctcgaccgcttcctcgacatcctccaggacctccacg 200 Query: 259 gc 260 || Sbjct: 201 gc 202
>gb|M86661.1|SCFSCPEPCD Saccharum hybrid cultivar H32-8560 phosphoenolpyruvate carboxylase (SCPEPCD1) gene, complete cds Length = 8638 Score = 89.7 bits (45), Expect = 6e-15 Identities = 99/117 (84%) Strand = Plus / Plus Query: 144 atcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtg 203 |||||||||||||||||||| || | ||| ||| ||||||| |||||||| || || Sbjct: 1799 atcgacgcgcagctgcggctgctggccccgcagaagctctccgacgatgacaagcttgtc 1858 Query: 204 gagtacgacgcccttatcgtcgaccgcttcctcgacatcctccaggacttgcacggc 260 |||||||||||||| || ||||||| |||||||||||||| |||||| |||||||| Sbjct: 1859 gagtacgacgccctgctcctcgaccggttcctcgacatcctacaggacctgcacggc 1915
>emb|AJ318338.1|SSP318338 Saccharum spontaneum mRNA for putative C4 phosphoenolpyruvate carboxylase (pepc gene), (C4 PPCSs-1) Length = 3015 Score = 85.7 bits (43), Expect = 1e-13 Identities = 150/186 (80%), Gaps = 6/186 (3%) Strand = Plus / Plus Query: 129 gagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgag 188 ||||||||||| || |||||||||||||| || ||| | ||||| ||||||||||||| Sbjct: 10 gagcggcaccactccatcgacgcgcagctccgtgccctggcccccgacaaggtctccgag 69 Query: 189 gatgacaaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccag 248 || ||| | ||||||||||||| ||| |||||| |||||||||||||||||| Sbjct: 70 gag------ctcatccagtacgacgccctgctcgccgaccgtttcctcgacatcctccag 123 Query: 249 gacttgcacggcccccacctgcgcgaattcgtgcaggagtgctacgagctctcggcggag 308 ||| | || ||||| ||| |||||||| || ||||||||||||||| | ||||| || Sbjct: 124 gacctccatggccctagccttcgcgaatttgtccaggagtgctacgaggtgtcggccgat 183 Query: 309 tacgag 314 |||||| Sbjct: 184 tacgag 189
>emb|X63756.1|SVPEPCAA S.vulgare PEPC gene Length = 7071 Score = 83.8 bits (42), Expect = 4e-13 Identities = 122/149 (81%), Gaps = 6/149 (4%) Strand = Plus / Plus Query: 129 gagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgag 188 ||||||||||| || |||||||||||||| || ||||| |||||||||||||||||| Sbjct: 635 gagcggcaccactccatcgacgcgcagctccgtgccctcgcacccggcaaggtctccgag 694 Query: 189 gatgacaaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccag 248 || ||| | |||| |||||||| ||||||||||||||||||||||||||||| Sbjct: 695 gag------ctcatccagtatgacgccctgctcgtcgaccgcttcctcgacatcctccag 748 Query: 249 gacttgcacggcccccacctgcgcgaatt 277 ||| | || |||||| ||| |||||||| Sbjct: 749 gacctccatggccccagccttcgcgaatt 777
>gb|AY187619.1| Oryza sativa (indica cultivar-group) phosphoenolpyruvate carboxylase (PEPC) mRNA, complete cds Length = 2981 Score = 83.8 bits (42), Expect = 4e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 186 gaggatgacaaactcgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctc 245 ||||| ||||| || ||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 134 gaggacgacaagctggtggagtacgacgccctcctcctcgaccgcttcctcgacatcctc 193 Query: 246 caggac 251 |||||| Sbjct: 194 caggac 199 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 140 gtcgatcgacgcgcagctgcgg 161 |||||||||||||||||||||| Sbjct: 88 gtcgatcgacgcgcagctgcgg 109
>ref|NM_191306.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2901 Score = 69.9 bits (35), Expect = 6e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 144 atcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtg 203 |||||||||||||||||| |||| | || ||| |||| ||||| ||||| || ||| Sbjct: 34 atcgacgcgcagctgcggatcctggcgcctaagaagctctcggaggacgacaagcttgtg 93 Query: 204 gagtacgacgcccttatcgtcgaccgcttcctcgacatcctccagga 250 ||||||||||| || || |||| ||||||||||||||||||||||| Sbjct: 94 gagtacgacgcgctgctcctcgatcgcttcctcgacatcctccagga 140
>emb|X03613.1|ZMPEPCR Maize mRNA for phosphoenolpyruvate carboxylase (PEPCase EC 4.1.1.31) Length = 3028 Score = 69.9 bits (35), Expect = 6e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 220 tcgtcgaccgcttcctcgacatcctccaggacttgcacggcccccacctgcgcgaattcg 279 ||||||||||||||||| ||||||| |||||| | ||||| || ||| |||||||| | Sbjct: 18 tcgtcgaccgcttcctcaacatccttcaggacctccacgggcctagccttcgcgaatttg 77 Query: 280 tgcaggagtgctacgagctctcggcggagtacgag 314 | ||||||||||||||| | ||||| || |||||| Sbjct: 78 tccaggagtgctacgaggtatcggccgactacgag 112
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 69.9 bits (35), Expect = 6e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 144 atcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtg 203 |||||||||||||||||| |||| | || ||| |||| ||||| ||||| || ||| Sbjct: 31858097 atcgacgcgcagctgcggatcctggcgcctaagaagctctcggaggacgacaagcttgtg 31858038 Query: 204 gagtacgacgcccttatcgtcgaccgcttcctcgacatcctccagga 250 ||||||||||| || || |||| ||||||||||||||||||||||| Sbjct: 31858037 gagtacgacgcgctgctcctcgatcgcttcctcgacatcctccagga 31857991 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 228 cgcttcctcgacatcctccaggacttgcacggc 260 |||||||||||||||||| ||||| | |||||| Sbjct: 5898971 cgcttcctcgacatcctcgaggacctccacggc 5899003
>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1131G08 Length = 158241 Score = 69.9 bits (35), Expect = 6e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 144 atcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtg 203 |||||||||||||||||| |||| | || ||| |||| ||||| ||||| || ||| Sbjct: 44175 atcgacgcgcagctgcggatcctggcgcctaagaagctctcggaggacgacaagcttgtg 44116 Query: 204 gagtacgacgcccttatcgtcgaccgcttcctcgacatcctccagga 250 ||||||||||| || || |||| ||||||||||||||||||||||| Sbjct: 44115 gagtacgacgcgctgctcctcgatcgcttcctcgacatcctccagga 44069
>dbj|AK101274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033B07, full insert sequence Length = 3056 Score = 69.9 bits (35), Expect = 6e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 144 atcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtg 203 |||||||||||||||||| |||| | || ||| |||| ||||| ||||| || ||| Sbjct: 111 atcgacgcgcagctgcggatcctggcgcctaagaagctctcggaggacgacaagcttgtg 170 Query: 204 gagtacgacgcccttatcgtcgaccgcttcctcgacatcctccagga 250 ||||||||||| || || |||| ||||||||||||||||||||||| Sbjct: 171 gagtacgacgcgctgctcctcgatcgcttcctcgacatcctccagga 217
>emb|X61489.1|ZMPHOPCAR Zea mays pep gene for (C3 type) phosphoenolpyruvate carboxylase Length = 3213 Score = 63.9 bits (32), Expect = 4e-07 Identities = 92/112 (82%) Strand = Plus / Plus Query: 140 gtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaact 199 |||||||||||||||||||||| | || || || || ||||| || ||||| || || || Sbjct: 136 gtcgatcgacgcgcagctgcggatgctggtgccggggaaggtttcggaggacgataagct 195 Query: 200 cgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctccaggac 251 | | ||||||||||| || || |||| || |||||||||||||| |||||| Sbjct: 196 catcgagtacgacgctctcctcctcgatcggttcctcgacatccttcaggac 247
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 56.0 bits (28), Expect = 9e-05 Identities = 88/108 (81%) Strand = Plus / Minus Query: 140 gtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaact 199 ||||||||||||||||||||||| || || || | ||| | || ||||| ||||| || Sbjct: 8643100 gtcgatcgacgcgcagctgcggcagctggtgccggcgaagctgtcggaggacgacaagct 8643041 Query: 200 cgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctcca 247 | | ||||||||||| || || ||||||| ||||||||| ||||||| Sbjct: 8643040 catcgagtacgacgcgctcctcctcgaccgattcctcgacgtcctcca 8642993
>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0057D11 Length = 190790 Score = 56.0 bits (28), Expect = 9e-05 Identities = 88/108 (81%) Strand = Plus / Minus Query: 140 gtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaact 199 ||||||||||||||||||||||| || || || | ||| | || ||||| ||||| || Sbjct: 72896 gtcgatcgacgcgcagctgcggcagctggtgccggcgaagctgtcggaggacgacaagct 72837 Query: 200 cgtggagtacgacgcccttatcgtcgaccgcttcctcgacatcctcca 247 | | ||||||||||| || || ||||||| ||||||||| ||||||| Sbjct: 72836 catcgagtacgacgcgctcctcctcgaccgattcctcgacgtcctcca 72789
>gb|AY112262.1| Zea mays CL19216_1 mRNA sequence Length = 599 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 223 tcgaccgcttcctcgacatcctccaggacttgcacggc 260 ||||||| |||||||||||||| |||||| |||||||| Sbjct: 274 tcgaccggttcctcgacatcctacaggacctgcacggc 311
>gb|S60264.1| pepcZm3B=phosphoenolpyruvate carboxylase {5' region} [corn, protoplast, Genomic, 370 nt] Length = 370 Score = 48.1 bits (24), Expect = 0.021 Identities = 39/44 (88%) Strand = Plus / Plus Query: 168 gtccccggcaaggtctccgaggatgacaaactcgtggagtacga 211 ||||| ||||||||||||||||| ||||| ||| | |||||||| Sbjct: 301 gtcccaggcaaggtctccgaggacgacaagctcatcgagtacga 344
>emb|X63871.1|ZMPEPC3B Z.mays pepcZm3B mRNA for phosphoenolpyruvate carboxylase, 5' region Length = 183 Score = 48.1 bits (24), Expect = 0.021 Identities = 39/44 (88%) Strand = Plus / Plus Query: 168 gtccccggcaaggtctccgaggatgacaaactcgtggagtacga 211 ||||| ||||||||||||||||| ||||| ||| | |||||||| Sbjct: 114 gtcccaggcaaggtctccgaggacgacaagctcatcgagtacga 157
>gb|AF271162.1| Hydrilla verticillata phosphoenolpyruvate carboxylase isoform 2 mRNA, complete cds Length = 3212 Score = 46.1 bits (23), Expect = 0.085 Identities = 62/75 (82%) Strand = Plus / Plus Query: 177 aaggtctccgaggatgacaaactcgtggagtacgacgcccttatcgtcgaccgcttcctc 236 ||||| || ||||| ||||| ||||| ||||||||||| || | | || ||||||||| Sbjct: 137 aaggtgtcggaggacgacaatctcgtcgagtacgacgcactgctgcttgatcgcttcctc 196 Query: 237 gacatcctccaggac 251 |||||||| |||||| Sbjct: 197 gacatcctacaggac 211
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 46.1 bits (23), Expect = 0.085 Identities = 23/23 (100%) Strand = Plus / Minus Query: 220 tcgtcgaccgcttcctcgacatc 242 ||||||||||||||||||||||| Sbjct: 338338 tcgtcgaccgcttcctcgacatc 338316
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 328 aggcccggatagccgagctcgggagc 353 |||||| ||||||||||||||||||| Sbjct: 3158076 aggccctgatagccgagctcgggagc 3158101
>ref|NM_188368.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1218 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 228 cgcttcctcgacatcctccaggacttgcacggc 260 |||||||||||||||||| ||||| | |||||| Sbjct: 253 cgcttcctcgacatcctcgaggacctccacggc 285
>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0016I09 Length = 148517 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 228 cgcttcctcgacatcctccaggacttgcacggc 260 |||||||||||||||||| ||||| | |||||| Sbjct: 102712 cgcttcctcgacatcctcgaggacctccacggc 102744
>dbj|AK066635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071A07, full insert sequence Length = 3495 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 228 cgcttcctcgacatcctccaggacttgcacggc 260 |||||||||||||||||| ||||| | |||||| Sbjct: 412 cgcttcctcgacatcctcgaggacctccacggc 444
>emb|CT573021.3| Pig DNA sequence from clone XX-BE155F1 on chromosome 14, complete sequence Length = 118416 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 acgcaggcgcgtgcgcgcgcc 95 ||||||||||||||||||||| Sbjct: 10104 acgcaggcgcgtgcgcgcgcc 10124
>ref|XM_421369.1| PREDICTED: Gallus gallus similar to Delta-like homolog (LOC423459), mRNA Length = 1609 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 23 ggaggatccgcgcgagctgcgcgc 46 |||||||||||||||||| ||||| Sbjct: 411 ggaggatccgcgcgagctccgcgc 434
>gb|AY552601.1| Pseudomonas mendocina KR1 toluene-4-monooxygenase gene cluster, complete sequence Length = 4644 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 tatcgtcgaccgcttcctcg 237 |||||||||||||||||||| Sbjct: 1383 tatcgtcgaccgcttcctcg 1402
>ref|XM_959201.1| Neurospora crassa OR74A hypothetical protein (NCU02136.1) partial mRNA Length = 975 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 tcgtccccggcaaggtctcc 185 |||||||||||||||||||| Sbjct: 266 tcgtccccggcaaggtctcc 285
>ref|XM_329325.1| Neurospora crassa OR74A hypothetical protein (NCU02136.1) partial mRNA Length = 975 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 tcgtccccggcaaggtctcc 185 |||||||||||||||||||| Sbjct: 266 tcgtccccggcaaggtctcc 285
>gb|AC104846.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0004C07, complete sequence Length = 135425 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 cggcgccctcggggaaggccgcaa 126 ||||||||||||||||||| |||| Sbjct: 62849 cggcgccctcggggaaggctgcaa 62872
>gb|AC158362.5| Mus musculus BAC clone RP23-214K5 from chromosome 8, complete sequence Length = 201185 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 81 gcgcgtgcgcgcgcccagatggcggcgc 108 |||||||||||||||||| |||||||| Sbjct: 53342 gcgcgtgcgcgcgcccagggggcggcgc 53315
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome Length = 2516575 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 tcgggagcaagttcaccagt 365 |||||||||||||||||||| Sbjct: 2108137 tcgggagcaagttcaccagt 2108118
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 cggcgccctcggggaaggccgcaa 126 ||||||||||||||||||| |||| Sbjct: 24461758 cggcgccctcggggaaggctgcaa 24461781
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 222 gtcgaccgcttcctcgacatcctc 245 |||||||||||| ||||||||||| Sbjct: 299417 gtcgaccgcttcttcgacatcctc 299394
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 cggcgccctcggggaaggccgcaa 126 ||||||||||||||||||| |||| Sbjct: 24773427 cggcgccctcggggaaggctgcaa 24773450
>gb|M65106.1|PSETMO P.mendocina toluene-4-monooxygenase (tmo) gene cluster, complete cds Length = 3609 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 tatcgtcgaccgcttcctcg 237 |||||||||||||||||||| Sbjct: 1383 tatcgtcgaccgcttcctcg 1402 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,675,422 Number of Sequences: 3902068 Number of extensions: 1675422 Number of successful extensions: 34341 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33901 Number of HSP's gapped (non-prelim): 434 length of query: 391 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 369 effective length of database: 17,147,199,772 effective search space: 6327316715868 effective search space used: 6327316715868 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
