ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl06g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_425437.1| PREDICTED: Gallus gallus similar to Grip1 prote... 44 0.071
2gb|AC099343.3| Homo sapiens BAC clone RP11-326I11 from 4, comple... 42 0.28
3gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 1.1
4gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 1.1
5ref|XM_447841.1| Candida glabrata CBS138, CAGL0J03146g partial mRNA 40 1.1
6emb|CR380956.1| Candida glabrata strain CBS138 chromosome J comp... 40 1.1
7emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 1.1
8gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 1.1
9ref|XM_550405.1| Oryza sativa (japonica cultivar-group), mRNA 38 4.4
10ref|XM_636474.1| Dictyostelium discoideum hypothetical protein (... 38 4.4
11ref|NG_000004.2| Homo sapiens cytochrome P450, family 3, subfami... 38 4.4
12gb|AC146138.2| Pan troglodytes BAC clone RP43-3D14 from 7, compl... 38 4.4
13gb|AC146392.5| Pan troglodytes BAC clone RP43-57L13 from 7, comp... 38 4.4
14gb|AC011904.3| Homo sapiens BAC clone CTD-3244O18 from 7, comple... 38 4.4
15gb|AC112521.4| Mus musculus BAC clone RP23-186C6 from 9, complet... 38 4.4
16emb|BX000476.5| Human DNA sequence from clone LL0XNC01-148H9 on ... 38 4.4
17emb|BX294147.1| Pirellula sp. strain 1 complete genome; segment ... 38 4.4
18gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 38 4.4
19dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 38 4.4
20gb|AC004977.2|AC004977 Homo sapiens PAC clone RP5-1152C17 from 7... 38 4.4
21dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.4
22gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 38 4.4
23gb|AF215839.1|AF215839 Homo sapiens chromosome X clone PPP2R3LX ... 38 4.4
24dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic D... 38 4.4
25emb|AL929413.13| Mouse DNA sequence from clone RP24-215D6 on chr... 38 4.4
26emb|BX510328.3| Human DNA sequence from clone XX-85689E12 on chr... 38 4.4

>ref|XM_425437.1| PREDICTED: Gallus gallus similar to Grip1 protein (LOC427863), mRNA
          Length = 5637

 Score = 44.1 bits (22), Expect = 0.071
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 14   caagcagaccacgaaaccaccc 35
            ||||||||||||||||||||||
Sbjct: 4355 caagcagaccacgaaaccaccc 4376



to top

>gb|AC099343.3| Homo sapiens BAC clone RP11-326I11 from 4, complete sequence
          Length = 196216

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 1     aaaaggaaaagcacaagcagaccac 25
             ||||||||||||| |||||||||||
Sbjct: 41008 aaaaggaaaagcagaagcagaccac 41032



to top

>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     cgccgtgccgccggcgaaaa 54
              ||||||||||||||||||||
Sbjct: 263816 cgccgtgccgccggcgaaaa 263797



to top

>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     cgccgtgccgccggcgaaaa 54
              ||||||||||||||||||||
Sbjct: 946083 cgccgtgccgccggcgaaaa 946064



to top

>ref|XM_447841.1| Candida glabrata CBS138, CAGL0J03146g partial mRNA
          Length = 2685

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 11  gcacaagcagaccacgaaac 30
           ||||||||||||||||||||
Sbjct: 255 gcacaagcagaccacgaaac 274



to top

>emb|CR380956.1| Candida glabrata strain CBS138 chromosome J complete sequence
          Length = 1192501

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     gcacaagcagaccacgaaac 30
              ||||||||||||||||||||
Sbjct: 300532 gcacaagcagaccacgaaac 300551



to top

>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     cgccgtgccgccggcgaaaa 54
              ||||||||||||||||||||
Sbjct: 788486 cgccgtgccgccggcgaaaa 788467



to top

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 34      ccgccgtgccgccggcgaaa 53
               ||||||||||||||||||||
Sbjct: 3908238 ccgccgtgccgccggcgaaa 3908257



to top

>ref|XM_550405.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1950

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 80   gcggaggtgcggccgcggc 98
            |||||||||||||||||||
Sbjct: 1860 gcggaggtgcggccgcggc 1842



to top

>ref|XM_636474.1| Dictyostelium discoideum hypothetical protein (DDB0205950), partial
            mRNA
          Length = 1200

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1    aaaaggaaaagcacaagca 19
            |||||||||||||||||||
Sbjct: 1031 aaaaggaaaagcacaagca 1049



to top

>ref|NG_000004.2| Homo sapiens cytochrome P450, family 3, subfamily A (CYP3A) on
             chromosome 7
          Length = 428605

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 3     aaggaaaagcacaagcaga 21
             |||||||||||||||||||
Sbjct: 57995 aaggaaaagcacaagcaga 57977



to top

>gb|AC146138.2| Pan troglodytes BAC clone RP43-3D14 from 7, complete sequence
          Length = 176823

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     aaggaaaagcacaagcaga 21
             |||||||||||||||||||
Sbjct: 18169 aaggaaaagcacaagcaga 18187



to top

>gb|AC146392.5| Pan troglodytes BAC clone RP43-57L13 from 7, complete sequence
          Length = 170470

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 3     aaggaaaagcacaagcaga 21
             |||||||||||||||||||
Sbjct: 50960 aaggaaaagcacaagcaga 50942



to top

>gb|AC011904.3| Homo sapiens BAC clone CTD-3244O18 from 7, complete sequence
          Length = 113879

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 3     aaggaaaagcacaagcaga 21
             |||||||||||||||||||
Sbjct: 57995 aaggaaaagcacaagcaga 57977



to top

>gb|AC112521.4| Mus musculus BAC clone RP23-186C6 from 9, complete sequence
          Length = 230334

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 6      gaaaagcacaagcagacca 24
              |||||||||||||||||||
Sbjct: 201172 gaaaagcacaagcagacca 201190



to top

>emb|BX000476.5| Human DNA sequence from clone LL0XNC01-148H9 on chromosome X Contains
             the 5' end of a variant of the gene for protein
             phosphatase 2A 48 kDa regulatory subunit (PR48) and seven
             CpG islands, complete sequence
          Length = 33340

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 74    ccgaaggcggaggtgcggc 92
             |||||||||||||||||||
Sbjct: 20201 ccgaaggcggaggtgcggc 20219



to top

>emb|BX294147.1| Pirellula sp. strain 1 complete genome; segment 15/24
          Length = 314450

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    ccacgaaaccacccgccgt 40
             |||||||||||||||||||
Sbjct: 86689 ccacgaaaccacccgccgt 86707



to top

>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 24      acgaaaccacccgccgtgccgcc 46
               |||||||||||||||| ||||||
Sbjct: 1112392 acgaaaccacccgccgcgccgcc 1112370



to top

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 64      ggagatggcgccgaaggcg 82
               |||||||||||||||||||
Sbjct: 2459006 ggagatggcgccgaaggcg 2458988



to top

>gb|AC004977.2|AC004977 Homo sapiens PAC clone RP5-1152C17 from 7, complete sequence
          Length = 106473

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 3      aaggaaaagcacaagcaga 21
              |||||||||||||||||||
Sbjct: 103581 aaggaaaagcacaagcaga 103563



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 80      gcggaggtgcggccgcggc 98
               |||||||||||||||||||
Sbjct: 4294925 gcggaggtgcggccgcggc 4294943



to top

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 65      gagatggcgccgaaggcgg 83
               |||||||||||||||||||
Sbjct: 1431916 gagatggcgccgaaggcgg 1431934



to top

>gb|AF215839.1|AF215839 Homo sapiens chromosome X clone PPP2R3LX map Xp22, complete sequence
          Length = 42584

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 74   ccgaaggcggaggtgcggc 92
            |||||||||||||||||||
Sbjct: 8932 ccgaaggcggaggtgcggc 8914



to top

>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0666G04
          Length = 141983

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 80    gcggaggtgcggccgcggc 98
             |||||||||||||||||||
Sbjct: 74695 gcggaggtgcggccgcggc 74713



to top

>emb|AL929413.13| Mouse DNA sequence from clone RP24-215D6 on chromosome 4, complete
              sequence
          Length = 117742

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 50     gaaaaaacgagacgggagatggc 72
              |||||||||| ||||||||||||
Sbjct: 102599 gaaaaaacgacacgggagatggc 102577



to top

>emb|BX510328.3| Human DNA sequence from clone XX-85689E12 on chromosome X, complete
             sequence
          Length = 21252

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 74    ccgaaggcggaggtgcggc 92
             |||||||||||||||||||
Sbjct: 16079 ccgaaggcggaggtgcggc 16097


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 747,836
Number of Sequences: 3902068
Number of extensions: 747836
Number of successful extensions: 51954
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51329
Number of HSP's gapped (non-prelim): 625
length of query: 99
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 78
effective length of database: 17,151,101,840
effective search space: 1337785943520
effective search space used: 1337785943520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top