Clone Name | bastl06g01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_425437.1| PREDICTED: Gallus gallus similar to Grip1 protein (LOC427863), mRNA Length = 5637 Score = 44.1 bits (22), Expect = 0.071 Identities = 22/22 (100%) Strand = Plus / Plus Query: 14 caagcagaccacgaaaccaccc 35 |||||||||||||||||||||| Sbjct: 4355 caagcagaccacgaaaccaccc 4376
>gb|AC099343.3| Homo sapiens BAC clone RP11-326I11 from 4, complete sequence Length = 196216 Score = 42.1 bits (21), Expect = 0.28 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 aaaaggaaaagcacaagcagaccac 25 ||||||||||||| ||||||||||| Sbjct: 41008 aaaaggaaaagcagaagcagaccac 41032
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 cgccgtgccgccggcgaaaa 54 |||||||||||||||||||| Sbjct: 263816 cgccgtgccgccggcgaaaa 263797
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 cgccgtgccgccggcgaaaa 54 |||||||||||||||||||| Sbjct: 946083 cgccgtgccgccggcgaaaa 946064
>ref|XM_447841.1| Candida glabrata CBS138, CAGL0J03146g partial mRNA Length = 2685 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gcacaagcagaccacgaaac 30 |||||||||||||||||||| Sbjct: 255 gcacaagcagaccacgaaac 274
>emb|CR380956.1| Candida glabrata strain CBS138 chromosome J complete sequence Length = 1192501 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gcacaagcagaccacgaaac 30 |||||||||||||||||||| Sbjct: 300532 gcacaagcagaccacgaaac 300551
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 cgccgtgccgccggcgaaaa 54 |||||||||||||||||||| Sbjct: 788486 cgccgtgccgccggcgaaaa 788467
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ccgccgtgccgccggcgaaa 53 |||||||||||||||||||| Sbjct: 3908238 ccgccgtgccgccggcgaaa 3908257
>ref|XM_550405.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1950 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 gcggaggtgcggccgcggc 98 ||||||||||||||||||| Sbjct: 1860 gcggaggtgcggccgcggc 1842
>ref|XM_636474.1| Dictyostelium discoideum hypothetical protein (DDB0205950), partial mRNA Length = 1200 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 aaaaggaaaagcacaagca 19 ||||||||||||||||||| Sbjct: 1031 aaaaggaaaagcacaagca 1049
>ref|NG_000004.2| Homo sapiens cytochrome P450, family 3, subfamily A (CYP3A) on chromosome 7 Length = 428605 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 aaggaaaagcacaagcaga 21 ||||||||||||||||||| Sbjct: 57995 aaggaaaagcacaagcaga 57977
>gb|AC146138.2| Pan troglodytes BAC clone RP43-3D14 from 7, complete sequence Length = 176823 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 aaggaaaagcacaagcaga 21 ||||||||||||||||||| Sbjct: 18169 aaggaaaagcacaagcaga 18187
>gb|AC146392.5| Pan troglodytes BAC clone RP43-57L13 from 7, complete sequence Length = 170470 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 aaggaaaagcacaagcaga 21 ||||||||||||||||||| Sbjct: 50960 aaggaaaagcacaagcaga 50942
>gb|AC011904.3| Homo sapiens BAC clone CTD-3244O18 from 7, complete sequence Length = 113879 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 aaggaaaagcacaagcaga 21 ||||||||||||||||||| Sbjct: 57995 aaggaaaagcacaagcaga 57977
>gb|AC112521.4| Mus musculus BAC clone RP23-186C6 from 9, complete sequence Length = 230334 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 gaaaagcacaagcagacca 24 ||||||||||||||||||| Sbjct: 201172 gaaaagcacaagcagacca 201190
>emb|BX000476.5| Human DNA sequence from clone LL0XNC01-148H9 on chromosome X Contains the 5' end of a variant of the gene for protein phosphatase 2A 48 kDa regulatory subunit (PR48) and seven CpG islands, complete sequence Length = 33340 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 ccgaaggcggaggtgcggc 92 ||||||||||||||||||| Sbjct: 20201 ccgaaggcggaggtgcggc 20219
>emb|BX294147.1| Pirellula sp. strain 1 complete genome; segment 15/24 Length = 314450 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 ccacgaaaccacccgccgt 40 ||||||||||||||||||| Sbjct: 86689 ccacgaaaccacccgccgt 86707
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 38.2 bits (19), Expect = 4.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 24 acgaaaccacccgccgtgccgcc 46 |||||||||||||||| |||||| Sbjct: 1112392 acgaaaccacccgccgcgccgcc 1112370
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 64 ggagatggcgccgaaggcg 82 ||||||||||||||||||| Sbjct: 2459006 ggagatggcgccgaaggcg 2458988
>gb|AC004977.2|AC004977 Homo sapiens PAC clone RP5-1152C17 from 7, complete sequence Length = 106473 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 aaggaaaagcacaagcaga 21 ||||||||||||||||||| Sbjct: 103581 aaggaaaagcacaagcaga 103563
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 80 gcggaggtgcggccgcggc 98 ||||||||||||||||||| Sbjct: 4294925 gcggaggtgcggccgcggc 4294943
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 gagatggcgccgaaggcgg 83 ||||||||||||||||||| Sbjct: 1431916 gagatggcgccgaaggcgg 1431934
>gb|AF215839.1|AF215839 Homo sapiens chromosome X clone PPP2R3LX map Xp22, complete sequence Length = 42584 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 ccgaaggcggaggtgcggc 92 ||||||||||||||||||| Sbjct: 8932 ccgaaggcggaggtgcggc 8914
>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0666G04 Length = 141983 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 80 gcggaggtgcggccgcggc 98 ||||||||||||||||||| Sbjct: 74695 gcggaggtgcggccgcggc 74713
>emb|AL929413.13| Mouse DNA sequence from clone RP24-215D6 on chromosome 4, complete sequence Length = 117742 Score = 38.2 bits (19), Expect = 4.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 50 gaaaaaacgagacgggagatggc 72 |||||||||| |||||||||||| Sbjct: 102599 gaaaaaacgacacgggagatggc 102577
>emb|BX510328.3| Human DNA sequence from clone XX-85689E12 on chromosome X, complete sequence Length = 21252 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 ccgaaggcggaggtgcggc 92 ||||||||||||||||||| Sbjct: 16079 ccgaaggcggaggtgcggc 16097 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 747,836 Number of Sequences: 3902068 Number of extensions: 747836 Number of successful extensions: 51954 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51329 Number of HSP's gapped (non-prelim): 625 length of query: 99 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 78 effective length of database: 17,151,101,840 effective search space: 1337785943520 effective search space used: 1337785943520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)