>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score = 75.5 bits (184), Expect = 7e-14
 Identities = 38/65 (58%), Positives = 47/65 (72%)
 Frame = +1

Query: 268 QLELYVVRAQGVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMP 447
           +LE+ V R    D  + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG LK  YE+M 
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMA 114

Query: 448 ESELK 462
             E K
Sbjct: 115 PGENK 119

>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
           (Tumor necrosis factor type 1 receptor-associated
           protein 2) (55.11 protein)
          Length = 908

 Score = 75.5 bits (184), Expect = 7e-14
 Identities = 38/65 (58%), Positives = 47/65 (72%)
 Frame = +1

Query: 268 QLELYVVRAQGVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMP 447
           +LE+ V R    D  + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG LK  YE+M 
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMA 114

Query: 448 ESELK 462
             E K
Sbjct: 115 PGENK 119

>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome|
           non-ATPase subunit mts4) (19S regulatory cap region of
           26S protease subunit 2)
          Length = 891

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 33/65 (50%), Positives = 44/65 (67%)
 Frame = +1

Query: 271 LELYVVRAQGVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPE 450
           LEL V   Q   P +   +L  +++ IR++TSSMT+VPKPLKFLRPHY TL   Y+S P+
Sbjct: 57  LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPHYFTLVKIYDSWPQ 116

Query: 451 SELKS 465
           S  K+
Sbjct: 117 SPQKT 121

>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1|
          Length = 883

 Score = 62.0 bits (149), Expect = 8e-10
 Identities = 29/58 (50%), Positives = 41/58 (70%)
 Frame = +1

Query: 295 QGVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPESELKST 468
           Q  D  + + ALE+M+  I+++TSSMT+VPKPLKFLRPHY T+   Y+  P  + KS+
Sbjct: 48  QESDATLYKPALEAMKNSIKTSTSSMTAVPKPLKFLRPHYETMTKLYDEWPAGDDKSS 105

>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome|
           non-ATPase subunit 1)
          Length = 992

 Score = 58.9 bits (141), Expect = 7e-09
 Identities = 29/66 (43%), Positives = 44/66 (66%)
 Frame = +1

Query: 271 LELYVVRAQGVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPE 450
           LEL V R +  D  +   +L ++++ I+++TSSMT+VPKPLKFLRP Y  L + Y+   +
Sbjct: 48  LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVPKPLKFLRPTYPDLCSIYDKWTD 107

Query: 451 SELKST 468
             LKS+
Sbjct: 108 PNLKSS 113

>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1|
          Length = 983

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 26/66 (39%), Positives = 39/66 (59%)
 Frame = +1

Query: 271 LELYVVRAQGVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPE 450
           LE+ V      D  +    L  +++ I+++TSSMT+VPKPLKFLRP Y  L   Y+   +
Sbjct: 49  LEMLVQTLLEDDSKLYETTLTQLKEFIKNSTSSMTAVPKPLKFLRPFYPDLCKAYDKWSD 108

Query: 451 SELKST 468
            + KS+
Sbjct: 109 KDQKSS 114

>DMF1_SCHPO (P78953) Division mal foutue 1 protein|
          Length = 920

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +1

Query: 274 ELYVVRAQGVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPES 453
           ELY+  ++  +P +  +  +S++QE      S TS+PK     +  YG     Y  +P  
Sbjct: 357 ELYLQSSRNSEPEISTIINDSLQQENMDEDISATSIPKS----QAAYGHGSVTYHEVPRY 412

Query: 454 ELKSTWLTY 480
            L S  + Y
Sbjct: 413 NLTSASVGY 421

>UACA_MOUSE (Q8CGB3) Uveal autoantigen with coiled-coil domains and ankyrin|
           repeats protein (Nucling) (Nuclear membrane-binding
           protein)
          Length = 1411

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 268 QLELYVVRAQGVDPGVQ-RLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESM 444
           Q ++Y    Q   PG+   +   SM + +  +  S TS  +  + L+    TL+TYY+S 
Sbjct: 403 QGQMYTTEPQCASPGIPPHMHSRSMLRPLELSLPSQTSYSEN-EILKKELETLRTYYDSA 461

Query: 445 PESELK 462
            +  LK
Sbjct: 462 KQDRLK 467

>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2161

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 12   PTQQRRVASVPLAPRTLASPPAPSPNRIRPA 104
            P ++  +A VPLAP    +PP+P+P R   A
Sbjct: 1129 PPKEGVLAQVPLAPPQPGAPPSPAPARFSTA 1159

>ELL2_HUMAN (O00472) RNA polymerase II elongation factor ELL2|
          Length = 640

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 12  PTQQRRVASVPLAPRTLASP-PAPSPNRIRPASH 110
           PT ++  A +PL P   A P P P P+   P SH
Sbjct: 354 PTSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISH 387

>PCY2_RAT (O88637) Ethanolamine-phosphate cytidylyltransferase (EC|
          2.7.7.14) (Phosphorylethanolamine transferase)
          (CTP:phosphoethanolamine cytidylyltransferase)
          Length = 404

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 94 IRFGDGAGGLARVRGASGTEATRRCCVGVY 5
          IR G GAGG A ++G  G    R  C G Y
Sbjct: 2  IRNGHGAGGAAGLKGPGGQRTVRVWCDGCY 31

>YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4|
          Length = 376

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 12  PTQQRRVASVPLAPRTLASPPAP--SPNRIRPAS 107
           PTQQ    +VP AP   +S PAP  SPN I P++
Sbjct: 15  PTQQIDQLTVPNAPDGGSSAPAPSTSPNSISPSN 48

>YACF_SHIFL (Q83MF4) UPF0289 protein yacF|
          Length = 247

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +1

Query: 307 PGVQRLALESMRQEIRSATSSMTSVPKPLKFLR 405
           PGV +  +E++ Q++++A S + S P+  +FLR
Sbjct: 81  PGVDQSRIEALIQQLKAAVSVLISAPRIGQFLR 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,473,928
Number of Sequences: 219361
Number of extensions: 577615
Number of successful extensions: 2124
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2120
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)