ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl06e10 |
|---|---|
| Clone Library Name | barley_pub |
>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor| Length = 1355 Score = 32.7 bits (73), Expect = 0.36 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Frame = -3 Query: 416 AGKNCEEDAEIHLGRASLHGTPGRGFWRPNRGPAG-RAKPDPDGERRRWGEDWIRGAQRE 240 AG E A G +G PG+ + N+GP+G R P PDG G + GA E Sbjct: 474 AGARGEPGAIGFPGPKGPNGEPGKNGDKGNQGPSGNRGAPGPDGNNGAQGPAGLGGATGE 533 Query: 239 DSER 228 E+ Sbjct: 534 KGEQ 537
>SOX12_MOUSE (Q04890) SOX-12 protein| Length = 314 Score = 31.2 bits (69), Expect = 1.0 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 6/51 (11%) Frame = -3 Query: 419 AAGKNCEEDAEIHLGRASLHGTPGRGFW------RPNRGPAGRAKPDPDGE 285 AA ++ +ED E L L TPGR W R RGPA RA+ P GE Sbjct: 160 AAPEDDDEDEEEELLEVRLLETPGRELWRMVPAGRAARGPAERAQ-GPSGE 209
>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor| Length = 1804 Score = 30.8 bits (68), Expect = 1.4 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Frame = -3 Query: 377 GRASLHGTPGRGFWRPNRGPAG-RAKPDPDGERRRWGEDWIRGAQREDSE 231 G A + G PG + N GP G P P GE G+D + G + ED + Sbjct: 1289 GPAGIKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD 1338
>V_MUMP1 (P60167) Nonstructural protein V (Nonstructural protein NS1)| Length = 224 Score = 30.0 bits (66), Expect = 2.3 Identities = 14/38 (36%), Positives = 16/38 (42%) Frame = -3 Query: 356 TPGRGFWRPNRGPAGRAKPDPDGERRRWGEDWIRGAQR 243 TP F R R P R G RR W W++G R Sbjct: 147 TPVTEFKRGGREPCSRPDNPRGGHRREWSLSWVQGEVR 184
>PHK_STRAW (Q82NM9) Probable phosphoketolase (EC 4.1.2.-)| Length = 793 Score = 28.9 bits (63), Expect = 5.2 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = -3 Query: 377 GRASLHGTPGRGFWRPNRGPAGRAKPDPDGERRRWGEDWIRGAQRED 237 G A + G P G WR ++ P + +P E R E W+R + E+ Sbjct: 296 GPAEVDGRPVEGTWRAHQVPLPEVRENP--EHLRQLEGWLRSYRPEE 340
>IF2_MYCTU (P65131) Translation initiation factor IF-2| Length = 900 Score = 28.9 bits (63), Expect = 5.2 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = +1 Query: 253 PRIQSSPHLRRSPSGSGFARPAGPRFGRQNPRPGVP*SDALP 378 PR+ ++P P+ RP PR G RPGVP A P Sbjct: 150 PRVGNNPFSSAQPADRPIPRPPAPRPG--TARPGVPRPGASP 189
>IF2_MYCBO (P65132) Translation initiation factor IF-2| Length = 900 Score = 28.9 bits (63), Expect = 5.2 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = +1 Query: 253 PRIQSSPHLRRSPSGSGFARPAGPRFGRQNPRPGVP*SDALP 378 PR+ ++P P+ RP PR G RPGVP A P Sbjct: 150 PRVGNNPFSSAQPADRPIPRPPAPRPG--TARPGVPRPGASP 189
>P30_MYCPN (P75330) P30 adhesin (Cytadhesin P30) (30 kDa adhesin-related| protein) Length = 274 Score = 28.9 bits (63), Expect = 5.2 Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Frame = +1 Query: 250 APRIQSSPHLRRSPSGSGFARPAG--PRFGRQNPRPGVP*SDALP 378 APR PH +P GF G PR G Q PRPG+P P Sbjct: 228 APRPGMPPHPGMAPR-PGFPPQPGMAPRPGMQPPRPGMPPQPGFP 271
>PODO_MOUSE (Q91X05) Podocin| Length = 385 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -3 Query: 377 GRASLHGTPGRGFWRPNRGPAGRAKPDPDGERRRWGEDWIRGAQR 243 GR+S + + RG GRA+PD ER+ G RG R Sbjct: 14 GRSSRSSSRDDKKAKAGRGSRGRARPDAGAERQSTGRTATRGEPR 58
>HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)| Length = 3133 Score = 28.5 bits (62), Expect = 6.7 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -3 Query: 353 PGRGFWRPNRGPAGRAKPDPDGE 285 P W+ RGP+GRA+ P GE Sbjct: 2762 PSPASWKGGRGPSGRARERPVGE 2784
>PIAS2_MOUSE (Q8C5D8) Protein inhibitor of activated STAT2 (Protein inhibitor of| activated STAT x) (Msx-interacting zinc finger protein) (DAB2-interacting protein) (DIP) (Androgen receptor-interacting protein 3) (ARIP3) Length = 621 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/36 (36%), Positives = 16/36 (44%) Frame = +1 Query: 253 PRIQSSPHLRRSPSGSGFARPAGPRFGRQNPRPGVP 360 P +PH SP GS + P F Q P P +P Sbjct: 105 PSTSITPHSPSSPVGSVLLQDTKPTFEMQQPSPPIP 140
>PIAS2_HUMAN (O75928) Protein inhibitor of activated STAT2 (Protein inhibitor of| activated STAT x) (Msx-interacting zinc finger protein) (Miz1) (DAB2-interacting protein) (DIP) (Androgen receptor-interacting protein 3) (ARIP3) (PIAS-NY protein) Length = 621 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/36 (36%), Positives = 16/36 (44%) Frame = +1 Query: 253 PRIQSSPHLRRSPSGSGFARPAGPRFGRQNPRPGVP 360 P +PH SP GS + P F Q P P +P Sbjct: 105 PSTSVTPHSPSSPVGSVLLQDTKPTFEMQQPSPPIP 140
>ROL6_CAEEL (P20784) Cuticle collagen rol-6 (Protein roller-6)| Length = 348 Score = 28.5 bits (62), Expect = 6.7 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Frame = -3 Query: 398 EDAEIHLGRASLHGTPGRGFWRPNRGPAGR-AKPDPDGERRRWGEDWIRGAQRED 237 +D E LGR G PG +GP GR A P G + G GA ED Sbjct: 254 DDGERPLGRPGPRGPPGEAGPEGPQGPTGRDAYPGQSGPQGEPGLQGYGGAAGED 308
>COL39_CAEEL (Q09455) Cuticle collagen 39 precursor| Length = 323 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = -3 Query: 377 GRASLHGTPGRGFWRPNRGPAGRAKPDPDGERRRWGEDWIRGAQRED 237 G + G PG+ + +GPAG A PDG+ + G+D GA D Sbjct: 215 GPSGAPGQPGQSGGQGQQGPAGPA--GPDGQPGQPGQDGQAGAPGND 259
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%) Frame = -3 Query: 332 PNRGPAGRAKPDP--DGERRRWGEDWI-RGAQREDSERV 225 P RGP RA +P +GER GE+ + RG Q + ++V Sbjct: 816 PERGPLERATKEPPSEGERGGMGEEGLPRGTQDREEKQV 854 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,745,409 Number of Sequences: 219361 Number of extensions: 733486 Number of successful extensions: 3136 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2942 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3133 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
