ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl06e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101303.1| Oryza sativa (japonica cultivar-group) cDNA clon... 274 2e-70
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 180 2e-42
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 180 2e-42
4emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa... 180 2e-42
5emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa... 180 2e-42
6gb|AY943953.1| Streptomyces sp. FQ1 plasmid pFP1, complete sequence 46 0.090
7emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 44 0.36
8emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 44 0.36
9gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 44 0.36
10ref|XM_813478.1| Trypanosoma cruzi strain CL Brener ubiquitin hy... 42 1.4
11ref|XM_815074.1| Trypanosoma cruzi strain CL Brener ubiquitin hy... 42 1.4
12emb|Z25420.1|GDINCENPB G.domesticus class II INCENP protein mRNA... 42 1.4
13emb|Z25419.1|GDINCENPA G.domesticus class I INCENP protein mRNA,... 42 1.4
14emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete ... 42 1.4
15ref|NM_205330.1| Gallus gallus inner centromere protein antigens... 42 1.4
16dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 42 1.4
17dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.4
18dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.4
19gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 42 1.4
20gb|AF016585.1|AF016585 Streptomyces caelestis cytochrome P-450 h... 42 1.4
21ref|XM_472641.1| Oryza sativa (japonica cultivar-group), predic... 40 5.5
22gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.5
23gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 5.5
24gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 5.5
25emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete ... 40 5.5
26emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete ... 40 5.5
27gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.5
28ref|NM_172572.1| Mus musculus rhomboid 5 homolog 2 (Drosophila) ... 40 5.5
29dbj|AB126084.1| Oryza sativa (japonica cultivar-group) 0sFRO1 mR... 40 5.5
30gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 5.5
31gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequ... 40 5.5
32gb|AF478128.1| Japanese encephalitis virus polyprotein gene, par... 40 5.5
33gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.5
34dbj|AK028872.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 40 5.5
35gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.5
36dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
37dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
38dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
39dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
40gb|AF326498.1|AF326498 Zea mays small basic membrane integral pr... 40 5.5
41gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
42dbj|AB206041.1| Aeromonas hydrophila gene for hemolysin, complet... 40 5.5
43dbj|AP005545.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
44dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
45emb|AJ338850.1|HSA338850 Homo sapiens genomic sequence surroundi... 40 5.5
46dbj|AK070312.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
47dbj|AK067009.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
48gb|AY108278.1| Zea mays PCO119899 mRNA sequence 40 5.5
49gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone ... 40 5.5
50emb|AL731593.2|OSJN00235 Oryza sativa genomic DNA, chromosome 4,... 40 5.5
51emb|AL607039.25| Mouse DNA sequence from clone RP23-313J14 on ch... 40 5.5
52gb|AY849939.1| Japanese encephalitis virus strain HW, complete g... 40 5.5 
>dbj|AK101303.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033K21, full
           insert sequence
          Length = 2964

 Score =  274 bits (138), Expect = 2e-70
 Identities = 260/301 (86%), Gaps = 6/301 (1%)
 Strand = Plus / Plus

                                                                       
Query: 110 cgccgtcgccgccatgatcaccggcggccagagctacgtctcggcgccgccggccttctc 169
           ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 51  cgccgccgccgccatgatcaccggcggccagagctacgtctccgcgccgccggccttctc 110

                                                                       
Query: 170 cgcggacggccgcttcctcctcgtctgctccggccgctccgtctccgtcttcagcacctc 229
            || ||||| ||  ||||||||| |||| |||||||| ||||||||||||||||| ||||
Sbjct: 111 ggccgacgggcgtctcctcctcgcctgcaccggccgcaccgtctccgtcttcagcgcctc 170

                                                                       
Query: 230 caccggcatgctggtttcggagctggaggggcacgagggggacgtcaccgccgtcgtcgt 289
           ||||||||||||||| |||||||||||||||||||||||||||||||| || || || ||
Sbjct: 171 caccggcatgctggtgtcggagctggaggggcacgagggggacgtcacggcggtggtggt 230

                                                                       
Query: 290 ggtgccgccgcagggcaacgccgcggcgaccgccaagctcgcgagccactgctggacggc 349
           || |||||||| |      |  |||||| | || |||||||||||| |||||||||||||
Sbjct: 231 ggcgccgccgccg------gtggcggcggcggcgaagctcgcgagctactgctggacggc 284

                                                                       
Query: 350 tgggctcgacggtttcctcatctactgggacttcgccaccgccgagctggtgcggaaggt 409
            ||||| ||||| || ||  | ||||||||||||||  | || |||||||||||||||||
Sbjct: 285 ggggcttgacgggtttctggtttactgggacttcgcggcggcggagctggtgcggaaggt 344

            
Query: 410 c 410
           |
Sbjct: 345 c 345
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  180 bits (91), Expect = 2e-42
 Identities = 124/135 (91%)
 Strand = Plus / Plus

                                                                            
Query: 110      cgccgtcgccgccatgatcaccggcggccagagctacgtctcggcgccgccggccttctc 169
                ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 25785736 cgccgccgccgccatgatcaccggcggccagagctacgtctccgcgccgccggccttctc 25785795

                                                                            
Query: 170      cgcggacggccgcttcctcctcgtctgctccggccgctccgtctccgtcttcagcacctc 229
                 || ||||| ||  ||||||||| |||| |||||||| ||||||||||||||||| ||||
Sbjct: 25785796 ggccgacgggcgtctcctcctcgcctgcaccggccgcaccgtctccgtcttcagcgcctc 25785855

                               
Query: 230      caccggcatgctggt 244
                |||||||||||||||
Sbjct: 25785856 caccggcatgctggt 25785870



 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 136/165 (82%), Gaps = 6/165 (3%)
 Strand = Plus / Plus

                                                                            
Query: 246      tcggagctggaggggcacgagggggacgtcaccgccgtcgtcgtggtgccgccgcagggc 305
                |||||||||||||||||||||||||||||||| || || || |||| |||||||| ||  
Sbjct: 25785956 tcggagctggaggggcacgagggggacgtcacggcggtggtggtggcgccgccgccggtg 25786015

                                                                            
Query: 306      aacgccgcggcgaccgccaagctcgcgagccactgctggacggctgggctcgacggtttc 365
                      |||||| | || |||||||||||| ||||||||||||| ||||| ||||| || 
Sbjct: 25786016 ------gcggcggcggcgaagctcgcgagctactgctggacggcggggcttgacgggttt 25786069

                                                             
Query: 366      ctcatctactgggacttcgccaccgccgagctggtgcggaaggtc 410
                ||  | ||||||||||||||  | || ||||||||||||||||||
Sbjct: 25786070 ctggtttactgggacttcgcggcggcggagctggtgcggaaggtc 25786114
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  180 bits (91), Expect = 2e-42
 Identities = 124/135 (91%)
 Strand = Plus / Plus

                                                                            
Query: 110      cgccgtcgccgccatgatcaccggcggccagagctacgtctcggcgccgccggccttctc 169
                ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 25713912 cgccgccgccgccatgatcaccggcggccagagctacgtctccgcgccgccggccttctc 25713971

                                                                            
Query: 170      cgcggacggccgcttcctcctcgtctgctccggccgctccgtctccgtcttcagcacctc 229
                 || ||||| ||  ||||||||| |||| |||||||| ||||||||||||||||| ||||
Sbjct: 25713972 ggccgacgggcgtctcctcctcgcctgcaccggccgcaccgtctccgtcttcagcgcctc 25714031

                               
Query: 230      caccggcatgctggt 244
                |||||||||||||||
Sbjct: 25714032 caccggcatgctggt 25714046



 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 136/165 (82%), Gaps = 6/165 (3%)
 Strand = Plus / Plus

                                                                            
Query: 246      tcggagctggaggggcacgagggggacgtcaccgccgtcgtcgtggtgccgccgcagggc 305
                |||||||||||||||||||||||||||||||| || || || |||| |||||||| ||  
Sbjct: 25714132 tcggagctggaggggcacgagggggacgtcacggcggtggtggtggcgccgccgccggtg 25714191

                                                                            
Query: 306      aacgccgcggcgaccgccaagctcgcgagccactgctggacggctgggctcgacggtttc 365
                      |||||| | || |||||||||||| ||||||||||||| ||||| ||||| || 
Sbjct: 25714192 ------gcggcggcggcgaagctcgcgagctactgctggacggcggggcttgacgggttt 25714245

                                                             
Query: 366      ctcatctactgggacttcgccaccgccgagctggtgcggaaggtc 410
                ||  | ||||||||||||||  | || ||||||||||||||||||
Sbjct: 25714246 ctggtttactgggacttcgcggcggcggagctggtgcggaaggtc 25714290
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>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 137492

 Score =  180 bits (91), Expect = 2e-42
 Identities = 124/135 (91%)
 Strand = Plus / Plus

                                                                        
Query: 110  cgccgtcgccgccatgatcaccggcggccagagctacgtctcggcgccgccggccttctc 169
            ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 7187 cgccgccgccgccatgatcaccggcggccagagctacgtctccgcgccgccggccttctc 7246

                                                                        
Query: 170  cgcggacggccgcttcctcctcgtctgctccggccgctccgtctccgtcttcagcacctc 229
             || ||||| ||  ||||||||| |||| |||||||| ||||||||||||||||| ||||
Sbjct: 7247 ggccgacgggcgtctcctcctcgcctgcaccggccgcaccgtctccgtcttcagcgcctc 7306

                           
Query: 230  caccggcatgctggt 244
            |||||||||||||||
Sbjct: 7307 caccggcatgctggt 7321



 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 136/165 (82%), Gaps = 6/165 (3%)
 Strand = Plus / Plus

                                                                        
Query: 246  tcggagctggaggggcacgagggggacgtcaccgccgtcgtcgtggtgccgccgcagggc 305
            |||||||||||||||||||||||||||||||| || || || |||| |||||||| ||  
Sbjct: 7407 tcggagctggaggggcacgagggggacgtcacggcggtggtggtggcgccgccgccggtg 7466

                                                                        
Query: 306  aacgccgcggcgaccgccaagctcgcgagccactgctggacggctgggctcgacggtttc 365
                  |||||| | || |||||||||||| ||||||||||||| ||||| ||||| || 
Sbjct: 7467 ------gcggcggcggcgaagctcgcgagctactgctggacggcggggcttgacgggttt 7520

                                                         
Query: 366  ctcatctactgggacttcgccaccgccgagctggtgcggaaggtc 410
            ||  | ||||||||||||||  | || ||||||||||||||||||
Sbjct: 7521 ctggtttactgggacttcgcggcggcggagctggtgcggaaggtc 7565
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>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 167131

 Score =  180 bits (91), Expect = 2e-42
 Identities = 124/135 (91%)
 Strand = Plus / Plus

                                                                          
Query: 110    cgccgtcgccgccatgatcaccggcggccagagctacgtctcggcgccgccggccttctc 169
              ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 152974 cgccgccgccgccatgatcaccggcggccagagctacgtctccgcgccgccggccttctc 153033

                                                                          
Query: 170    cgcggacggccgcttcctcctcgtctgctccggccgctccgtctccgtcttcagcacctc 229
               || ||||| ||  ||||||||| |||| |||||||| ||||||||||||||||| ||||
Sbjct: 153034 ggccgacgggcgtctcctcctcgcctgcaccggccgcaccgtctccgtcttcagcgcctc 153093

                             
Query: 230    caccggcatgctggt 244
              |||||||||||||||
Sbjct: 153094 caccggcatgctggt 153108



 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 136/165 (82%), Gaps = 6/165 (3%)
 Strand = Plus / Plus

                                                                          
Query: 246    tcggagctggaggggcacgagggggacgtcaccgccgtcgtcgtggtgccgccgcagggc 305
              |||||||||||||||||||||||||||||||| || || || |||| |||||||| ||  
Sbjct: 153194 tcggagctggaggggcacgagggggacgtcacggcggtggtggtggcgccgccgccggtg 153253

                                                                          
Query: 306    aacgccgcggcgaccgccaagctcgcgagccactgctggacggctgggctcgacggtttc 365
                    |||||| | || |||||||||||| ||||||||||||| ||||| ||||| || 
Sbjct: 153254 ------gcggcggcggcgaagctcgcgagctactgctggacggcggggcttgacgggttt 153307

                                                           
Query: 366    ctcatctactgggacttcgccaccgccgagctggtgcggaaggtc 410
              ||  | ||||||||||||||  | || ||||||||||||||||||
Sbjct: 153308 ctggtttactgggacttcgcggcggcggagctggtgcggaaggtc 153352
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>gb|AY943953.1| Streptomyces sp. FQ1 plasmid pFP1, complete sequence
          Length = 39360

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 158   gccggccttctccgcggacggccgctt 184
             |||||||||| ||||||||||||||||
Sbjct: 28331 gccggccttcgccgcggacggccgctt 28305
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 131   cggcggccagagctacgtctcggcgccgccggcc 164
             ||||||| || ||| |||||||||||||||||||
Sbjct: 98016 cggcggctagggctgcgtctcggcgccgccggcc 98049
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>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 131   cggcggccagagctacgtctcggcgccgccggcc 164
             ||||||| || ||| |||||||||||||||||||
Sbjct: 21060 cggcggctagggctgcgtctcggcgccgccggcc 21093
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 295     cgccgcagggcaacgccgcggc 316
               ||||||||||||||||||||||
Sbjct: 3569111 cgccgcagggcaacgccgcggc 3569090
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>ref|XM_813478.1| Trypanosoma cruzi strain CL Brener ubiquitin hydrolase
            (Tc00.1047053507603.180) partial mRNA
          Length = 3402

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 108  gccgccgtcgccgccatgatc 128
            |||||||||||||||||||||
Sbjct: 3321 gccgccgtcgccgccatgatc 3301
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>ref|XM_815074.1| Trypanosoma cruzi strain CL Brener ubiquitin hydrolase
            (Tc00.1047053509429.250) partial mRNA
          Length = 3408

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 108  gccgccgtcgccgccatgatc 128
            |||||||||||||||||||||
Sbjct: 3327 gccgccgtcgccgccatgatc 3307
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>emb|Z25420.1|GDINCENPB G.domesticus class II INCENP protein mRNA, complete CDS
          Length = 4354

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 171 gcggacggccgcttcctcctc 191
           |||||||||||||||||||||
Sbjct: 251 gcggacggccgcttcctcctc 231
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>emb|Z25419.1|GDINCENPA G.domesticus class I INCENP protein mRNA, complete CDS
          Length = 4481

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 171 gcggacggccgcttcctcctc 191
           |||||||||||||||||||||
Sbjct: 251 gcggacggccgcttcctcctc 231
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>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29
          Length = 292100

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 224    cacctccaccggcatgctggt 244
              |||||||||||||||||||||
Sbjct: 111687 cacctccaccggcatgctggt 111707
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>ref|NM_205330.1| Gallus gallus inner centromere protein antigens 135/155kDa
           (INCENP), mRNA
          Length = 4481

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 171 gcggacggccgcttcctcctc 191
           |||||||||||||||||||||
Sbjct: 251 gcggacggccgcttcctcctc 231
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 290     ggtgccgccgcagggcaacgccgcg 314
               ||||||||||||||||||| |||||
Sbjct: 4909192 ggtgccgccgcagggcaacaccgcg 4909216
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 290     ggtgccgccgcagggcaacgccgcg 314
               |||||||| ||||||||||||||||
Sbjct: 2639296 ggtgccgctgcagggcaacgccgcg 2639320
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 288     gtggtgccgccgcagggcaac 308
               |||||||||||||||||||||
Sbjct: 5887576 gtggtgccgccgcagggcaac 5887596



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 160     cggccttctccgcggacggc 179
               ||||||||||||||||||||
Sbjct: 4683028 cggccttctccgcggacggc 4683009



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 107     ggccgccgtcgccgccatga 126
               ||||||||||||||||||||
Sbjct: 1644146 ggccgccgtcgccgccatga 1644165
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 290     ggtgccgccgcagggcaacgccgcg 314
               ||||||||||||||||||| |||||
Sbjct: 4911946 ggtgccgccgcagggcaacaccgcg 4911970
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>gb|AF016585.1|AF016585 Streptomyces caelestis cytochrome P-450 hydroxylase homolog (nidi)
             gene, partial cds; polyketide synthase modules 1 through 7
             (nidA) genes, complete cds; and N-methyltransferase
             homolog gene, partial cds
          Length = 41097

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 384   gccaccgccgagctggtgcgg 404
             |||||||||||||||||||||
Sbjct: 23298 gccaccgccgagctggtgcgg 23318
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>ref|XM_472641.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2262

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  cgccgccggccttctccgcg 173
            ||||||||||||||||||||
Sbjct: 2107 cgccgccggccttctccgcg 2088
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 107     ggccgccgtcgccgccatga 126
               ||||||||||||||||||||
Sbjct: 4441503 ggccgccgtcgccgccatga 4441484
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 105     ccggccgccgtcgccgccat 124
               ||||||||||||||||||||
Sbjct: 4318305 ccggccgccgtcgccgccat 4318324
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 105     ccggccgccgtcgccgccat 124
               ||||||||||||||||||||
Sbjct: 3242624 ccggccgccgtcgccgccat 3242643
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>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 272   cgtcaccgccgtcgtcgtggtgccgccgcagg 303
             |||| |||||||| ||| ||||||||||||||
Sbjct: 81691 cgtcgccgccgtcttcggggtgccgccgcagg 81722
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>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29
          Length = 300800

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 108   gccgccgtcgccgccatgatcacc 131
             ||||||||||||||| ||||||||
Sbjct: 98139 gccgccgtcgccgccgtgatcacc 98116
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 110     cgccgtcgccgccatgatcaccgg 133
               ||||| ||||||||||||||||||
Sbjct: 4325645 cgccgccgccgccatgatcaccgg 4325668
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>ref|NM_172572.1| Mus musculus rhomboid 5 homolog 2 (Drosophila) (Rhbdf2), mRNA
          Length = 3856

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cactgctggacggctgggct 355
           ||||||||||||||||||||
Sbjct: 88  cactgctggacggctgggct 69
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>dbj|AB126084.1| Oryza sativa (japonica cultivar-group) 0sFRO1 mRNA for ferric
            reductase, complete cds
          Length = 2582

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  cgccgccggccttctccgcg 173
            ||||||||||||||||||||
Sbjct: 2299 cgccgccggccttctccgcg 2280
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 105     ccggccgccgtcgccgccat 124
               ||||||||||||||||||||
Sbjct: 3288488 ccggccgccgtcgccgccat 3288507
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>gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequence
          Length = 250948

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   cgtcaccgccgtcgtcgtgg 291
             ||||||||||||||||||||
Sbjct: 52729 cgtcaccgccgtcgtcgtgg 52710
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>gb|AF478128.1| Japanese encephalitis virus polyprotein gene, partial cds
          Length = 1730

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 319 ccgccaagctcgcgagccac 338
           ||||||||||||||||||||
Sbjct: 67  ccgccaagctcgcgagccac 48
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 150     tcggcgccgccggccttctc 169
               ||||||||||||||||||||
Sbjct: 3944400 tcggcgccgccggccttctc 3944381
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>dbj|AK028872.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
           library, clone:4732465I17 product:EPIDERMAL GROWTH
           FACTOR RECEPTOR-RELATED PROTEIN (FRAGMENT) homolog [Homo
           sapiens], full insert sequence
          Length = 3856

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 cactgctggacggctgggct 355
           ||||||||||||||||||||
Sbjct: 88  cactgctggacggctgggct 69
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 151     cggcgccgccggccttctccgcgg 174
               ||||||||||||||||| ||||||
Sbjct: 1211504 cggcgccgccggccttcaccgcgg 1211481
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 154      cgccgccggccttctccgcg 173
                ||||||||||||||||||||
Sbjct: 22162131 cgccgccggccttctccgcg 22162112
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 108     gccgccgtcgccgccatgat 127
               ||||||||||||||||||||
Sbjct: 6476027 gccgccgtcgccgccatgat 6476008
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 107     ggccgccgtcgccgccatga 126
               ||||||||||||||||||||
Sbjct: 4441618 ggccgccgtcgccgccatga 4441599
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 304      gcaacgccgcggcgaccgcc 323
                ||||||||||||||||||||
Sbjct: 12555264 gcaacgccgcggcgaccgcc 12555245
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>gb|AF326498.1|AF326498 Zea mays small basic membrane integral protein ZmSIP1-2 mRNA,
           complete cds
          Length = 936

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 269 ggacgtcaccgccgtcgtcg 288
           ||||||||||||||||||||
Sbjct: 181 ggacgtcaccgccgtcgtcg 162
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>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0042J17, complete sequence
          Length = 171442

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   ggccgccgtcgccgccatga 126
             ||||||||||||||||||||
Sbjct: 46795 ggccgccgtcgccgccatga 46776
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>dbj|AB206041.1| Aeromonas hydrophila gene for hemolysin, complete cds, strain:AH201
          Length = 1866

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 338 ctgctggacggctgggctcg 357
           ||||||||||||||||||||
Sbjct: 805 ctgctggacggctgggctcg 824
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>dbj|AP005545.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0638H11
          Length = 162746

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    gccgccgtcgccgccatgat 127
              ||||||||||||||||||||
Sbjct: 142971 gccgccgtcgccgccatgat 142952
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>dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0572D06
          Length = 148920

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   gcaacgccgcggcgaccgcc 323
             ||||||||||||||||||||
Sbjct: 59797 gcaacgccgcggcgaccgcc 59778
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>emb|AJ338850.1|HSA338850 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-SB12R
          Length = 662

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 151 cggcgccgccggccttctcc 170
           ||||||||||||||||||||
Sbjct: 84  cggcgccgccggccttctcc 103
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>dbj|AK070312.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047G23, full
            insert sequence
          Length = 2582

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  cgccgccggccttctccgcg 173
            ||||||||||||||||||||
Sbjct: 2299 cgccgccggccttctccgcg 2280
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>dbj|AK067009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093I17, full
            insert sequence
          Length = 2628

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  cgccgccggccttctccgcg 173
            ||||||||||||||||||||
Sbjct: 2189 cgccgccggccttctccgcg 2170
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>gb|AY108278.1| Zea mays PCO119899 mRNA sequence
          Length = 1540

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 269 ggacgtcaccgccgtcgtcg 288
           ||||||||||||||||||||
Sbjct: 171 ggacgtcaccgccgtcgtcg 152
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>gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from
             chromosome 4, complete sequence
          Length = 90825

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   cgccgccggccttctccgcg 173
             ||||||||||||||||||||
Sbjct: 86637 cgccgccggccttctccgcg 86618
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>emb|AL731593.2|OSJN00235 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027P08,
             complete sequence
          Length = 118959

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   cgccgccggccttctccgcg 173
             ||||||||||||||||||||
Sbjct: 31992 cgccgccggccttctccgcg 31973
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>emb|AL607039.25| Mouse DNA sequence from clone RP23-313J14 on chromosome 11, complete
             sequence
          Length = 147376

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   cactgctggacggctgggct 355
             ||||||||||||||||||||
Sbjct: 54506 cactgctggacggctgggct 54525
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>gb|AY849939.1| Japanese encephalitis virus strain HW, complete genome
          Length = 10977

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 319 ccgccaagctcgcgagccac 338
           ||||||||||||||||||||
Sbjct: 453 ccgccaagctcgcgagccac 434


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,345,766
Number of Sequences: 3902068
Number of extensions: 2345766
Number of successful extensions: 68878
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66204
Number of HSP's gapped (non-prelim): 2674
length of query: 414
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 392
effective length of database: 17,147,199,772
effective search space: 6721702310624
effective search space used: 6721702310624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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