>gb|AY110865.1| Zea mays CL588_1 mRNA sequence
          Length = 3331

 Score =  123 bits (62), Expect = 2e-25
 Identities = 104/118 (88%)
 Strand = Plus / Plus

                                                                       
Query: 103 gcgaagacttcttgccggaggggggaaagctcccggagctcaagctagatgctaggcaag 162
           |||| ||||||  ||||||||| || |||||||| ||| ||||||||||||| || ||||
Sbjct: 88  gcgacgacttcacgccggagggcggcaagctccccgagttcaagctagatgcgagacaag 147

                                                                     
Query: 163 cccagggtttcatctccttcttcaagaagttgccgaaggatcctcgggccattcgtct 220
           | ||||||||||||||||||||||||||| ||||| ||||||| |||||| |||||||
Sbjct: 148 cgcagggtttcatctccttcttcaagaagctgccgcaggatccccgggccgttcgtct 205

>emb|AJ238785.1|ZMA238785 Zea mays mus1 gene, exons 1-13
          Length = 10376

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                             
Query: 149  agatgctaggcaagcccagggtttcatctccttcttcaagaagttgccg 197
            |||||| || ||||| ||||||||||||||||||||||||||| |||||
Sbjct: 1130 agatgcgagacaagcgcagggtttcatctccttcttcaagaagctgccg 1178

>gb|AC132488.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0522C01,
              complete sequence
          Length = 136120

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                              
Query: 103    gcgaagacttcttgccggaggggggaaagctcccggagctcaagctag 150
              |||| ||||||||||||||||| || |||||||| |||||||||||||
Sbjct: 116533 gcgacgacttcttgccggagggcggcaagctccccgagctcaagctag 116580



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                         
Query: 148    tagatgctaggcaagcccagggtttcatctccttcttcaagaa 190
              ||||||| |||||||| ||||| |||||||| |||||||||||
Sbjct: 116653 tagatgcgaggcaagcgcagggcttcatctctttcttcaagaa 116695

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                                
Query: 103      gcgaagacttcttgccggaggggggaaagctcccggagctcaagctag 150
                |||| ||||||||||||||||| || |||||||| |||||||||||||
Sbjct: 11089243 gcgacgacttcttgccggagggcggcaagctccccgagctcaagctag 11089290



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 148      tagatgctaggcaagcccagggtttcatctccttcttcaagaa 190
                ||||||| |||||||| ||||| |||||||| |||||||||||
Sbjct: 11089363 tagatgcgaggcaagcgcagggcttcatctctttcttcaagaa 11089405

>gb|AC078814.23| Homo sapiens 12 BAC RP11-848D3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 191463

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 161   agcccagggtttcatctccttc 182
             ||||||||||||||||||||||
Sbjct: 51057 agcccagggtttcatctccttc 51036

>gb|AC156620.10| Mus musculus chromosome 5, clone RP23-80G18, complete sequence
          Length = 248320

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   ctagatgctaggcaagcccag 167
             |||||||||||||||||||||
Sbjct: 29537 ctagatgctaggcaagcccag 29517

>emb|AL354979.17| Human DNA sequence from clone RP11-10J18 on chromosome 9, complete
             sequence
          Length = 85997

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 175   tctccttcttcaagaagttgc 195
             |||||||||||||||||||||
Sbjct: 39142 tctccttcttcaagaagttgc 39162

>ref|XM_323439.1| Neurospora crassa OR74A hypothetical protein (NCU04100.1) partial
            mRNA
          Length = 2121

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  tcatctccttcttcaagaag 191
            ||||||||||||||||||||
Sbjct: 1472 tcatctccttcttcaagaag 1491

>ref|XM_955769.1| Neurospora crassa OR74A hypothetical protein (NCU04100.1) partial
            mRNA
          Length = 2121

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  tcatctccttcttcaagaag 191
            ||||||||||||||||||||
Sbjct: 1472 tcatctccttcttcaagaag 1491

>gb|DQ279927.1| Human herpesvirus 4 strain AG876, complete genome
          Length = 172764

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    ggtttcatctccttcttcaa 187
              ||||||||||||||||||||
Sbjct: 158179 ggtttcatctccttcttcaa 158160

>emb|BX294025.1|NCB16M17 Neurospora crassa DNA linkage group V BAC clone B16M17
          Length = 78402

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   tcatctccttcttcaagaag 191
             ||||||||||||||||||||
Sbjct: 54254 tcatctccttcttcaagaag 54273

>emb|AL112914.1|CNS01AGQ Botrytis cinerea strain T4 cDNA library
          Length = 720

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 177 tccttcttcaagaagttgcc 196
           ||||||||||||||||||||
Sbjct: 187 tccttcttcaagaagttgcc 206

>emb|AJ581750.1|CHE581750 Cercopithecine herpesvirus 12 (Baboon herpesvirus) gB gene for
            glycoprotein B
          Length = 2598

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 167  gggtttcatctccttcttcaagaa 190
            ||||||||||||||| ||||||||
Sbjct: 2193 gggtttcatctcctttttcaagaa 2216

>emb|AJ251097.1|EVI251097 Epstein-Barr virus mRNA for RPMS1 protein (rpms1 gene), strain C15
          Length = 4008

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 168  ggtttcatctccttcttcaa 187
            ||||||||||||||||||||
Sbjct: 1958 ggtttcatctccttcttcaa 1939

>emb|AJ251096.1|EVI251096 Epstein-Barr virus mRNA for A73 protein (a73 gene), strain C15
          Length = 2168

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 168  ggtttcatctccttcttcaa 187
            ||||||||||||||||||||
Sbjct: 1147 ggtttcatctccttcttcaa 1128

>emb|V01555.2|EBV Epstein-Barr virus (EBV) genome, strain B95-8
          Length = 172281

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    ggtttcatctccttcttcaa 187
              ||||||||||||||||||||
Sbjct: 157153 ggtttcatctccttcttcaa 157134

>gb|AY961628.3| Human herpesvirus 4 strain GD1, complete genome
          Length = 171657

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    ggtttcatctccttcttcaa 187
              ||||||||||||||||||||
Sbjct: 156606 ggtttcatctccttcttcaa 156587

>emb|AJ507799.2|HHV507799 Human herpesvirus 4 complete wild type genome
          Length = 171823

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    ggtttcatctccttcttcaa 187
              ||||||||||||||||||||
Sbjct: 156695 ggtttcatctccttcttcaa 156676

>gb|S56281.1|S56281 {clone T13, exons 1,2,3 and 4} [Epstein-Barr virus EBV, mRNA, 1035
           nt]
          Length = 1035

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 ggtttcatctccttcttcaa 187
           ||||||||||||||||||||
Sbjct: 38  ggtttcatctccttcttcaa 19

>gb|M80517.1|HS4B958RAJ Epstein-Barr virus, artifactual joining of B95-8 complete genome and the
              sequences from Raji of the large deletion found in B95-8
          Length = 184113

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    ggtttcatctccttcttcaa 187
              ||||||||||||||||||||
Sbjct: 168984 ggtttcatctccttcttcaa 168965


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,415,017
Number of Sequences: 3902068
Number of extensions: 1415017
Number of successful extensions: 99629
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99547
Number of HSP's gapped (non-prelim): 82
length of query: 222
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 200
effective length of database: 17,147,199,772
effective search space: 3429439954400
effective search space used: 3429439954400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)