ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl06d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_359936.1| Magnaporthe grisea 70-15 hypothetical protein (... 38 6.5
2gb|AC122291.4| Mus musculus BAC clone RP23-255N20 from 15, compl... 38 6.5
3gb|AC146224.2| Pan troglodytes BAC clone RP43-27B20 from 7, comp... 38 6.5
4gb|AC099336.2| Homo sapiens chromosome 1 clone RP11-175B9, compl... 38 6.5
5gb|AF324892.1|AF324889S4 Homo sapiens myosin phosphatase target ... 38 6.5
6gb|AC015973.2|AC015973 Homo sapiens BAC clone RP11-366C6 from Y,... 38 6.5

>ref|XM_359936.1| Magnaporthe grisea 70-15 hypothetical protein (MG04841.4) partial
           mRNA
          Length = 726

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 111 ccctccccaccgccggtgc 129
           |||||||||||||||||||
Sbjct: 644 ccctccccaccgccggtgc 662



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>gb|AC122291.4| Mus musculus BAC clone RP23-255N20 from 15, complete sequence
          Length = 184378

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 36    aaggaaagagctgccctgtcttc 58
             |||||||||||||||||| ||||
Sbjct: 87738 aaggaaagagctgccctgacttc 87760



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>gb|AC146224.2| Pan troglodytes BAC clone RP43-27B20 from 7, complete sequence
          Length = 141824

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 35    aaaggaaagagctgccctg 53
             |||||||||||||||||||
Sbjct: 27159 aaaggaaagagctgccctg 27141



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>gb|AC099336.2| Homo sapiens chromosome 1 clone RP11-175B9, complete sequence
          Length = 159838

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 35    aaaggaaagagctgccctg 53
             |||||||||||||||||||
Sbjct: 68451 aaaggaaagagctgccctg 68433



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>gb|AF324892.1|AF324889S4 Homo sapiens myosin phosphatase target subunit 2 (MYPT2) gene, exons 11
             through 24, and complete cds
          Length = 150000

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 35    aaaggaaagagctgccctg 53
             |||||||||||||||||||
Sbjct: 58985 aaaggaaagagctgccctg 58967



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>gb|AC015973.2|AC015973 Homo sapiens BAC clone RP11-366C6 from Y, complete sequence
          Length = 171834

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 35    aaaggaaagagctgccctg 53
             |||||||||||||||||||
Sbjct: 41968 aaaggaaagagctgccctg 41950


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,089,516
Number of Sequences: 3902068
Number of extensions: 1089516
Number of successful extensions: 61408
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61396
Number of HSP's gapped (non-prelim): 12
length of query: 138
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 117
effective length of database: 17,151,101,840
effective search space: 2006678915280
effective search space used: 2006678915280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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