ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl06d08 |
|---|---|
| Clone Library Name | barley_pub |
>ATK4_ARATH (O81635) Kinesin-4 (Kinesin-like protein D)| Length = 987 Score = 87.4 bits (215), Expect = 1e-17 Identities = 46/92 (50%), Positives = 56/92 (60%), Gaps = 2/92 (2%) Frame = +2 Query: 173 DVLREHGCRLSDRDLASXXXXXXXXXXXXXXXWLRRTVGAVAGRDLPEEPSEEEFRLGLR 352 DVL++H R SD L S WLR +G G+D P EPSEEEFRLGLR Sbjct: 21 DVLQQHSSRSSDVGLVSRKVEESSLRRYEAAGWLRDMIGVSNGKDFPGEPSEEEFRLGLR 80 Query: 353 NGQILCSALNRVHPGAVQKVVTA--DSVDGAA 442 +G +LC+ LN+V+PG+V KVV A D DGAA Sbjct: 81 SGIVLCNVLNKVNPGSVSKVVEAPDDVADGAA 112
>CNN3_HUMAN (Q15417) Calponin-3 (Calponin, acidic isoform)| Length = 329 Score = 36.2 bits (82), Expect = 0.037 Identities = 14/26 (53%), Positives = 22/26 (84%) Frame = +2 Query: 335 FRLGLRNGQILCSALNRVHPGAVQKV 412 F+LGL++G ILC +N++ PG+V+KV Sbjct: 48 FQLGLKDGIILCELINKLQPGSVKKV 73
>CNN3_RAT (P37397) Calponin-3 (Calponin, acidic isoform) (Calponin,| non-muscle isoform) Length = 330 Score = 36.2 bits (82), Expect = 0.037 Identities = 14/26 (53%), Positives = 22/26 (84%) Frame = +2 Query: 335 FRLGLRNGQILCSALNRVHPGAVQKV 412 F+LGL++G ILC +N++ PG+V+KV Sbjct: 48 FQLGLKDGIILCELINKLQPGSVKKV 73
>CNN3_MOUSE (Q9DAW9) Calponin-3 (Calponin, acidic isoform)| Length = 330 Score = 36.2 bits (82), Expect = 0.037 Identities = 14/26 (53%), Positives = 22/26 (84%) Frame = +2 Query: 335 FRLGLRNGQILCSALNRVHPGAVQKV 412 F+LGL++G ILC +N++ PG+V+KV Sbjct: 48 FQLGLKDGIILCELINKLQPGSVKKV 73
>CNN1_CHICK (P26932) Calponin-1 (Calponin, smooth muscle)| Length = 292 Score = 35.0 bits (79), Expect = 0.083 Identities = 14/28 (50%), Positives = 21/28 (75%) Frame = +2 Query: 329 EEFRLGLRNGQILCSALNRVHPGAVQKV 412 + F GL++G ILC +N++ PG+VQKV Sbjct: 48 DNFMDGLKDGVILCELINKLQPGSVQKV 75
>CNN2_PONPY (Q5RFN6) Calponin-2 (Calponin H2, smooth muscle) (Neutral calponin)| Length = 308 Score = 34.7 bits (78), Expect = 0.11 Identities = 12/27 (44%), Positives = 22/27 (81%) Frame = +2 Query: 332 EFRLGLRNGQILCSALNRVHPGAVQKV 412 +F+ GL++G ILC+ +N++ PG+V K+ Sbjct: 48 DFQKGLKDGTILCTLMNKLQPGSVPKI 74
>CNN2_HUMAN (Q99439) Calponin-2 (Calponin H2, smooth muscle) (Neutral calponin)| Length = 308 Score = 34.7 bits (78), Expect = 0.11 Identities = 12/27 (44%), Positives = 22/27 (81%) Frame = +2 Query: 332 EFRLGLRNGQILCSALNRVHPGAVQKV 412 +F+ GL++G ILC+ +N++ PG+V K+ Sbjct: 48 DFQKGLKDGTILCTLMNKLQPGSVPKI 74
>CNN2_MOUSE (Q08093) Calponin-2 (Calponin H2, smooth muscle) (Neutral calponin)| Length = 305 Score = 34.3 bits (77), Expect = 0.14 Identities = 12/27 (44%), Positives = 22/27 (81%) Frame = +2 Query: 332 EFRLGLRNGQILCSALNRVHPGAVQKV 412 +F+ GL++G ILC+ +N++ PG+V K+ Sbjct: 49 DFQKGLKDGVILCTLMNKLQPGSVPKI 75
>CNN2_BOVIN (Q3SYU6) Calponin-2 (Calponin H2, smooth muscle) (Neutral calponin)| Length = 308 Score = 34.3 bits (77), Expect = 0.14 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +2 Query: 269 WLRRTVGAVAGRDLPEEPSEEEFRLGLRNGQILCSALNRVHPGAVQKV 412 W+ G G D F+ GL++G ILC+ +N++ PG+V K+ Sbjct: 36 WIEGLTGLSVGPD---------FQKGLKDGIILCTLMNKLQPGSVPKI 74
>CNN2_PIG (Q08094) Calponin-2 (Calponin H2, smooth muscle) (Neutral calponin)| (Fragment) Length = 296 Score = 33.9 bits (76), Expect = 0.18 Identities = 12/27 (44%), Positives = 22/27 (81%) Frame = +2 Query: 332 EFRLGLRNGQILCSALNRVHPGAVQKV 412 +F+ GL++G ILC+ +N++ PG+V K+ Sbjct: 49 DFQKGLKDGIILCTLMNKLQPGSVPKI 75
>CNN1_SHEEP (Q7YRL2) Calponin-1 (Calponin H1, smooth muscle) (Basic calponin)| Length = 297 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = +2 Query: 272 LRRTVGAVAGRDLPEEPSEEEFRLGLRNGQILCSALNRVHPGAVQKV 412 LR + V GR + F GL++G ILC +N++ PG+V+KV Sbjct: 34 LREWIEGVTGRRIGNN-----FMDGLKDGIILCEFINKLQPGSVKKV 75
>CNN1_RAT (Q08290) Calponin-1 (Calponin H1, smooth muscle) (Basic calponin)| Length = 297 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = +2 Query: 272 LRRTVGAVAGRDLPEEPSEEEFRLGLRNGQILCSALNRVHPGAVQKV 412 LR + V GR + F GL++G ILC +N++ PG+V+KV Sbjct: 34 LREWIEGVTGRRIGSN-----FMDGLKDGIILCEFINKLQPGSVKKV 75
>CNN1_PIG (Q08092) Calponin-1 (Calponin H1, smooth muscle) (Basic calponin)| Length = 297 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = +2 Query: 272 LRRTVGAVAGRDLPEEPSEEEFRLGLRNGQILCSALNRVHPGAVQKV 412 LR + V GR + F GL++G ILC +N++ PG+V+KV Sbjct: 34 LREWIEGVTGRRIGNN-----FMDGLKDGIILCEFINKLQPGSVKKV 75
>CNN1_MUSPF (Q9GK38) Calponin-1 (Calponin H1, smooth muscle) (Basic calponin)| Length = 297 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = +2 Query: 272 LRRTVGAVAGRDLPEEPSEEEFRLGLRNGQILCSALNRVHPGAVQKV 412 LR + V GR + F GL++G ILC +N++ PG+V+KV Sbjct: 34 LREWIEGVTGRRIGSN-----FMDGLKDGIILCEFINKLQPGSVKKV 75
>CNN1_MOUSE (Q08091) Calponin-1 (Calponin H1, smooth muscle) (Basic calponin)| Length = 297 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = +2 Query: 272 LRRTVGAVAGRDLPEEPSEEEFRLGLRNGQILCSALNRVHPGAVQKV 412 LR + V GR + F GL++G ILC +N++ PG+V+KV Sbjct: 34 LREWIEGVTGRRIGNN-----FMDGLKDGIILCEFINKLQPGSVKKV 75
>LMO7_HUMAN (Q8WWI1) LIM domain only protein 7 (LOMP) (F-box only protein 20)| Length = 1683 Score = 33.9 bits (76), Expect = 0.18 Identities = 11/28 (39%), Positives = 20/28 (71%) Frame = +2 Query: 329 EEFRLGLRNGQILCSALNRVHPGAVQKV 412 ++FR L NG +LC +N++ PG ++K+ Sbjct: 85 KDFRASLENGVLLCDLINKLKPGVIKKI 112
>ARHG6_HUMAN (Q15052) Rho guanine nucleotide exchange factor 6 (Rac/Cdc42| guanine nucleotide exchange factor 6) (PAK-interacting exchange factor alpha) (Alpha-Pix) (COOL-2) Length = 776 Score = 33.5 bits (75), Expect = 0.24 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = +2 Query: 326 EEEFRLGLRNGQILCSALNRVHPGAVQK 409 EE + L+NG +LC +NR+ PG+V+K Sbjct: 28 EEFLKSSLKNGVVLCKLINRLMPGSVEK 55
>CNN1_HUMAN (P51911) Calponin-1 (Calponin H1, smooth muscle) (Basic calponin)| Length = 297 Score = 33.5 bits (75), Expect = 0.24 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = +2 Query: 272 LRRTVGAVAGRDLPEEPSEEEFRLGLRNGQILCSALNRVHPGAVQKV 412 LR + V GR + F GL++G ILC +N++ PG+V+K+ Sbjct: 34 LREWIEGVTGRRIGNN-----FMDGLKDGIILCEFINKLQPGSVKKI 75
>ARHG6_MOUSE (Q8K4I3) Rho guanine nucleotide exchange factor 6 (Rac/Cdc42| guanine nucleotide exchange factor 6) Length = 771 Score = 33.1 bits (74), Expect = 0.31 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = +2 Query: 326 EEEFRLGLRNGQILCSALNRVHPGAVQK 409 EE + L+NG +LC +NR+ PG+V+K Sbjct: 28 EEFLKSSLKNGVVLCKLINRLLPGSVEK 55
>LIN26_CAEEL (Q27355) Transcription factor lin-26 (Abnormal cell lineage protein| 26) Length = 438 Score = 32.3 bits (72), Expect = 0.54 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Frame = +2 Query: 281 TVGAVAGRDLPEEPSEEEFRLGLRNGQILCSALNRVHP--GAVQKVVTADSVDGAA 442 T+ + DL EP +F LG + Q+ S L+ +HP ++ A+++ GAA Sbjct: 195 TISKASSEDLKTEPDSTDFGLGTSDDQVRASMLHLLHPVFAPAFGMLDAENIFGAA 250
>ARHG6_RAT (Q5XXR3) Rho guanine nucleotide exchange factor 6 (Rac/Cdc42| guanine nucleotide exchange factor 6) Length = 772 Score = 31.2 bits (69), Expect = 1.2 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = +2 Query: 326 EEEFRLGLRNGQILCSALNRVHPGAVQK 409 EE + L+NG +LC ++R+ PG+V+K Sbjct: 28 EEFLKSSLKNGVVLCKLISRLLPGSVEK 55
>CNN1_MELGA (P37803) Calponin-1 (Calponin, smooth muscle) (Fragment)| Length = 176 Score = 31.2 bits (69), Expect = 1.2 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = +2 Query: 329 EEFRLGLRNGQILCSALNRVHPGAVQKV 412 + F GL++G IL +N++ PG+VQKV Sbjct: 42 DNFXDGLKDGVILMELINKLQPGSVQKV 69
>MP20_DROME (P14318) Muscle-specific protein 20| Length = 184 Score = 29.6 bits (65), Expect = 3.5 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +2 Query: 320 PSEEEFRLGLRNGQILCSALNRVHPGAVQKV 412 P+ + + L++GQ+LC +N + P AV KV Sbjct: 36 PAGQSYEDVLKDGQVLCKLINVLSPNAVPKV 66
>ARHG6_CHICK (Q5ZLR6) Rho guanine nucleotide exchange factor 6 (Rac/Cdc42| guanine nucleotide exchange factor 6) Length = 764 Score = 28.5 bits (62), Expect = 7.7 Identities = 10/28 (35%), Positives = 19/28 (67%) Frame = +2 Query: 326 EEEFRLGLRNGQILCSALNRVHPGAVQK 409 EE + L++G +LC ++R+ PG+ +K Sbjct: 28 EEFLKTSLKDGTVLCKLIHRLLPGSAEK 55 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,488,394 Number of Sequences: 219361 Number of extensions: 395521 Number of successful extensions: 1123 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1123 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
