ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl06d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 252 8e-64
2gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare str... 252 8e-64
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 252 8e-64
4ref|XM_472805.1| Oryza sativa (japonica cultivar-group), predic... 46 0.096
5emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4,... 46 0.096
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.096
7ref|NM_075282.3| Caenorhabditis elegans tryptophanyl (W) tRNA Sy... 44 0.38
8dbj|AB096635.1| Caenorhabditis elegans wrs-1 mRNA for tryptophan... 44 0.38
9emb|AL132853.2|CEY80D3A Caenorhabditis elegans YAC Y80D3A, compl... 44 0.38
10ref|XM_463443.1| Oryza sativa (japonica cultivar-group), predic... 42 1.5
11gb|AF045646.3| Caenorhabditis elegans cosmid F56B3, complete seq... 42 1.5
12emb|AL355802.13| Human DNA sequence from clone RP3-337H4 on chro... 42 1.5
13emb|CR626442.1| full-length cDNA clone CS0DF029YJ02 of Fetal bra... 42 1.5
14ref|NM_067581.2| Caenorhabditis elegans COLlagen family member (... 42 1.5
15dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
16dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
17dbj|AK109619.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
18dbj|AK105550.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
19ref|NM_001012974.1| Homo sapiens chromosome 6 open reading frame... 42 1.5
20gb|BC108661.1| Homo sapiens chromosome 6 open reading frame 154,... 42 1.5
21dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
22ref|NM_114341.3| Arabidopsis thaliana ATP binding / microtubule ... 40 5.9
23ref|XM_493806.1| Oryza sativa (japonica cultivar-group), predic... 40 5.9
24ref|XM_482245.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.9
25gb|AC002534.1| Arabidopsis thaliana BAC T32N15 from chromosome I... 40 5.9
26ref|NM_029781.1| Mus musculus RAB36, member RAS oncogene family ... 40 5.9
27gb|AC142500.23| Mus musculus strain C57BL/6J clone rp23-334e13, ... 40 5.9
28gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
29gb|AF398149.4| Arabidopsis thaliana kinesin-like protein heavy c... 40 5.9
30gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 5.9
31ref|XM_750736.1| Aspergillus fumigatus Af293 thioredoxin (Afu2g1... 40 5.9
32gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
33emb|X07645.1|NTALSURB Tobacco acetolactate synthase gene, ALS Su... 40 5.9
34dbj|AK142025.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN ... 40 5.9
35gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
36gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.9
37dbj|AK038445.1| Mus musculus adult male hypothalamus cDNA, RIKEN... 40 5.9
38dbj|AK046113.1| Mus musculus adult male corpora quadrigemina cDN... 40 5.9
39dbj|AK043946.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 40 5.9
40gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome 40 5.9
41dbj|AK018269.1| Mus musculus adult male medulla oblongata cDNA, ... 40 5.9
42gb|AC160402.8| Mus musculus 10 BAC RP23-115L17 (Roswell Park Can... 40 5.9
43dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
44dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
45gb|AF149204.1|AF149204 Mus musculus Su(var)3-9 homolog Suv39h2 (... 40 5.9
46gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.9
47dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
48dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.9
49dbj|AK122145.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
50dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
51ref|XM_565819.1| Anopheles gambiae str. PEST ENSANGP00000027638 ... 40 5.9
52ref|XM_310554.2| Anopheles gambiae str. PEST ENSANGP00000007396 ... 40 5.9
53dbj|AK109497.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
54dbj|AK104313.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
55dbj|AK066570.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
56emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 5.9
57emb|AL732620.14| Mouse DNA sequence from clone RP23-167G19 on ch... 40 5.9
58gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 5.9
59dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  252 bits (127), Expect = 8e-64
 Identities = 154/163 (94%)
 Strand = Plus / Minus

                                                                            
Query: 242      gcggccaggcggaacgaggcggcggggtggctgcgccgcacggtgggggccgtcgccggg 301
                ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct: 10607516 gcggcgaggcggaacgaggcggcggggtggctgcgccgcacggtgggggcggtggccgcg 10607457

                                                                            
Query: 302      cgggacctgccggaggagccgtcggaggaggagttccgcctcggcctccgcaacggccag 361
                || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 10607456 cgcgacctgccggaggagccgtcggaggaggagttccggctcggcctccgcaacggccag 10607397

                                                           
Query: 362      atcctctgcagcgcgctcaacagggtccacccaggcgctgtcc 404
                ||||||||| |||||||||||||||||||||| ||||| ||||
Sbjct: 10607396 atcctctgcggcgcgctcaacagggtccacccgggcgccgtcc 10607354



 Score =  190 bits (96), Expect = 3e-45
 Identities = 117/124 (94%)
 Strand = Plus / Minus

                                                                            
Query: 119      cggatggcggaggcggcgtcgctcttctcgctctccgcggccgccgtggtggaggacgtg 178
                |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 10607767 cggatggcggaggcggcggcgctcttctcgctctccgcggccgccgtggtggaggacgtg 10607708

                                                                            
Query: 179      ctgagggagcacggctgccgcctcagcgaccgcgacctcgcctcgcgcaggacgggggaa 238
                ||| || ||||||| ||||||||||||||||||||||||||||| |||||| ||| ||||
Sbjct: 10607707 ctgcggcagcacgggtgccgcctcagcgaccgcgacctcgcctcccgcagggcggaggaa 10607648

                    
Query: 239      gccg 242
                ||||
Sbjct: 10607647 gccg 10607644



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                            
Query: 1        ataaccacccccacaaaaccaccacgca 28
                ||||||||||||||||||||||||||||
Sbjct: 10607910 ataaccacccccacaaaaccaccacgca 10607883



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 77       cctaattccaccgtccattt 96
                ||||||||||||||||||||
Sbjct: 10607855 cctaattccaccgtccattt 10607836



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 124     ggcggaggcggcgtcgctct 143
               ||||||||||||||||||||
Sbjct: 1610525 ggcggaggcggcgtcgctct 1610544
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>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032G21, from chromosome 3, complete sequence
          Length = 187621

 Score =  252 bits (127), Expect = 8e-64
 Identities = 154/163 (94%)
 Strand = Plus / Minus

                                                                         
Query: 242   gcggccaggcggaacgaggcggcggggtggctgcgccgcacggtgggggccgtcgccggg 301
             ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct: 24430 gcggcgaggcggaacgaggcggcggggtggctgcgccgcacggtgggggcggtggccgcg 24371

                                                                         
Query: 302   cgggacctgccggaggagccgtcggaggaggagttccgcctcggcctccgcaacggccag 361
             || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 24370 cgcgacctgccggaggagccgtcggaggaggagttccggctcggcctccgcaacggccag 24311

                                                        
Query: 362   atcctctgcagcgcgctcaacagggtccacccaggcgctgtcc 404
             ||||||||| |||||||||||||||||||||| ||||| ||||
Sbjct: 24310 atcctctgcggcgcgctcaacagggtccacccgggcgccgtcc 24268



 Score =  190 bits (96), Expect = 3e-45
 Identities = 117/124 (94%)
 Strand = Plus / Minus

                                                                         
Query: 119   cggatggcggaggcggcgtcgctcttctcgctctccgcggccgccgtggtggaggacgtg 178
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24681 cggatggcggaggcggcggcgctcttctcgctctccgcggccgccgtggtggaggacgtg 24622

                                                                         
Query: 179   ctgagggagcacggctgccgcctcagcgaccgcgacctcgcctcgcgcaggacgggggaa 238
             ||| || ||||||| ||||||||||||||||||||||||||||| |||||| ||| ||||
Sbjct: 24621 ctgcggcagcacgggtgccgcctcagcgaccgcgacctcgcctcccgcagggcggaggaa 24562

                 
Query: 239   gccg 242
             ||||
Sbjct: 24561 gccg 24558



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                         
Query: 1     ataaccacccccacaaaaccaccacgca 28
             ||||||||||||||||||||||||||||
Sbjct: 24824 ataaccacccccacaaaaccaccacgca 24797



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    cctaattccaccgtccattt 96
             ||||||||||||||||||||
Sbjct: 24769 cctaattccaccgtccattt 24750
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  252 bits (127), Expect = 8e-64
 Identities = 154/163 (94%)
 Strand = Plus / Minus

                                                                            
Query: 242      gcggccaggcggaacgaggcggcggggtggctgcgccgcacggtgggggccgtcgccggg 301
                ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct: 10605617 gcggcgaggcggaacgaggcggcggggtggctgcgccgcacggtgggggcggtggccgcg 10605558

                                                                            
Query: 302      cgggacctgccggaggagccgtcggaggaggagttccgcctcggcctccgcaacggccag 361
                || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 10605557 cgcgacctgccggaggagccgtcggaggaggagttccggctcggcctccgcaacggccag 10605498

                                                           
Query: 362      atcctctgcagcgcgctcaacagggtccacccaggcgctgtcc 404
                ||||||||| |||||||||||||||||||||| ||||| ||||
Sbjct: 10605497 atcctctgcggcgcgctcaacagggtccacccgggcgccgtcc 10605455



 Score =  190 bits (96), Expect = 3e-45
 Identities = 117/124 (94%)
 Strand = Plus / Minus

                                                                            
Query: 119      cggatggcggaggcggcgtcgctcttctcgctctccgcggccgccgtggtggaggacgtg 178
                |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 10605868 cggatggcggaggcggcggcgctcttctcgctctccgcggccgccgtggtggaggacgtg 10605809

                                                                            
Query: 179      ctgagggagcacggctgccgcctcagcgaccgcgacctcgcctcgcgcaggacgggggaa 238
                ||| || ||||||| ||||||||||||||||||||||||||||| |||||| ||| ||||
Sbjct: 10605808 ctgcggcagcacgggtgccgcctcagcgaccgcgacctcgcctcccgcagggcggaggaa 10605749

                    
Query: 239      gccg 242
                ||||
Sbjct: 10605748 gccg 10605745



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                            
Query: 1        ataaccacccccacaaaaccaccacgca 28
                ||||||||||||||||||||||||||||
Sbjct: 10606011 ataaccacccccacaaaaccaccacgca 10605984



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 77       cctaattccaccgtccattt 96
                ||||||||||||||||||||
Sbjct: 10605956 cctaattccaccgtccattt 10605937



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 124     ggcggaggcggcgtcgctct 143
               ||||||||||||||||||||
Sbjct: 1610523 ggcggaggcggcgtcgctct 1610542
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>ref|XM_472805.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4392

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 307 cctgccggaggagccgtcggaggaggagttc 337
           ||||||||||  |||||||||||||||||||
Sbjct: 129 cctgccggagaggccgtcggaggaggagttc 159
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>emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016O02,
             complete sequence
          Length = 167988

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 307   cctgccggaggagccgtcggaggaggagttc 337
             ||||||||||  |||||||||||||||||||
Sbjct: 70386 cctgccggagaggccgtcggaggaggagttc 70356
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 307      cctgccggaggagccgtcggaggaggagttc 337
                ||||||||||  |||||||||||||||||||
Sbjct: 23353065 cctgccggagaggccgtcggaggaggagttc 23353035
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>ref|NM_075282.3| Caenorhabditis elegans tryptophanyl (W) tRNA Synthetase family
           member (wrs-1) (wrs-1) mRNA, complete cds
          Length = 1987

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 312 cggaggagccgtcggaggaggagttc 337
           ||||||||||| ||||||||||||||
Sbjct: 71  cggaggagccgccggaggaggagttc 96
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>dbj|AB096635.1| Caenorhabditis elegans wrs-1 mRNA for tryptophanyl-tRNA synthetase
           (cytosolic), complete cds
          Length = 1254

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 312 cggaggagccgtcggaggaggagttc 337
           ||||||||||| ||||||||||||||
Sbjct: 54  cggaggagccgccggaggaggagttc 79
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>emb|AL132853.2|CEY80D3A Caenorhabditis elegans YAC Y80D3A, complete sequence
          Length = 102495

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 312  cggaggagccgtcggaggaggagttc 337
            ||||||||||| ||||||||||||||
Sbjct: 3471 cggaggagccgccggaggaggagttc 3446
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>ref|XM_463443.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1725

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 153  ccgcggccgccgtggtggagg 173
            |||||||||||||||||||||
Sbjct: 1280 ccgcggccgccgtggtggagg 1300
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>gb|AF045646.3| Caenorhabditis elegans cosmid F56B3, complete sequence
          Length = 39874

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 313  ggaggagccgtcggaggagga 333
            |||||||||||||||||||||
Sbjct: 3003 ggaggagccgtcggaggagga 2983
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>emb|AL355802.13| Human DNA sequence from clone RP3-337H4 on chromosome 6 Contains the 3'
             part of a novel gene, three novel genes, the gene for RNA
             polymerase I 40 kDa subunit (RPA40) (RPA39), the gene for
             exportin 5 (KIAA1291) (XPO5), a 40S ribosomal protein S2
             (RPS2) pseudogene, the 5' part of the POLH gene for DNA
             directed polymerase eta and four CpG islands, complete
             sequence
          Length = 105935

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 190   cggctgccgcctcagcgaccgcgac 214
             ||||||||||||| |||||||||||
Sbjct: 22435 cggctgccgcctctgcgaccgcgac 22411
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>emb|CR626442.1| full-length cDNA clone CS0DF029YJ02 of Fetal brain of Homo sapiens
           (human)
          Length = 1659

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 190 cggctgccgcctcagcgaccgcgac 214
           ||||||||||||| |||||||||||
Sbjct: 595 cggctgccgcctctgcgaccgcgac 619
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>ref|NM_067581.2| Caenorhabditis elegans COLlagen family member (col-103) (col-103)
           mRNA, complete cds
          Length = 1168

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 313 ggaggagccgtcggaggagga 333
           |||||||||||||||||||||
Sbjct: 359 ggaggagccgtcggaggagga 379
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 153      ccgcggccgccgtggtggagg 173
                |||||||||||||||||||||
Sbjct: 32026531 ccgcggccgccgtggtggagg 32026511
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>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0512C01
          Length = 176261

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 153   ccgcggccgccgtggtggagg 173
             |||||||||||||||||||||
Sbjct: 68345 ccgcggccgccgtggtggagg 68325
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>dbj|AK109619.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-A03, full
            insert sequence
          Length = 2768

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 153  ccgcggccgccgtggtggagg 173
            |||||||||||||||||||||
Sbjct: 1032 ccgcggccgccgtggtggagg 1012
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>dbj|AK105550.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-A10, full
            insert sequence
          Length = 1834

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 153  ccgcggccgccgtggtggagg 173
            |||||||||||||||||||||
Sbjct: 1288 ccgcggccgccgtggtggagg 1308
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>ref|NM_001012974.1| Homo sapiens chromosome 6 open reading frame 154 (C6orf154), mRNA
          Length = 2121

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 190  cggctgccgcctcagcgaccgcgac 214
            ||||||||||||| |||||||||||
Sbjct: 1009 cggctgccgcctctgcgaccgcgac 1033
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>gb|BC108661.1| Homo sapiens chromosome 6 open reading frame 154, mRNA (cDNA clone
           MGC:131686 IMAGE:5240367), complete cds
          Length = 1805

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 190 cggctgccgcctcagcgaccgcgac 214
           ||||||||||||| |||||||||||
Sbjct: 666 cggctgccgcctctgcgaccgcgac 690
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>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0460E08
          Length = 170021

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 153    ccgcggccgccgtggtggagg 173
              |||||||||||||||||||||
Sbjct: 123258 ccgcggccgccgtggtggagg 123238
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>ref|NM_114341.3| Arabidopsis thaliana ATP binding / microtubule motor AT3G44730
           mRNA, complete cds
          Length = 3264

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 320 ccgtcggaggaggagttccgcctcggcctccgcaacggcc 359
           |||||||| || ||||||  ||||| ||||||||||||||
Sbjct: 37  ccgtcggaagacgagttctccctcgccctccgcaacggcc 76
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>ref|XM_493806.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1050

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 124 ggcggaggcggcgtcgctct 143
           ||||||||||||||||||||
Sbjct: 810 ggcggaggcggcgtcgctct 791
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>ref|XM_482245.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2790

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 295 cgccgggcgggacctgccggagga 318
           |||||| |||||||||||||||||
Sbjct: 233 cgccggacgggacctgccggagga 256
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>gb|AC002534.1| Arabidopsis thaliana BAC T32N15 from chromosome III near 54 cM,
             complete sequence
          Length = 101371

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 320   ccgtcggaggaggagttccgcctcggcctccgcaacggcc 359
             |||||||| || ||||||  ||||| ||||||||||||||
Sbjct: 74475 ccgtcggaagacgagttctccctcgccctccgcaacggcc 74436
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>ref|NM_029781.1| Mus musculus RAB36, member RAS oncogene family (Rab36), mRNA
          Length = 2621

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 tggaggacgtgctgagggag 187
           ||||||||||||||||||||
Sbjct: 701 tggaggacgtgctgagggag 720
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>gb|AC142500.23| Mus musculus strain C57BL/6J clone rp23-334e13, complete sequence
          Length = 210212

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 168    tggaggacgtgctgagggag 187
              ||||||||||||||||||||
Sbjct: 205143 tggaggacgtgctgagggag 205162
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>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0053D02,
              complete sequence
          Length = 157106

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 311    ccggaggagccgtcggaggaggag 334
              |||||||||| |||||||||||||
Sbjct: 111048 ccggaggagcggtcggaggaggag 111025
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>gb|AF398149.4| Arabidopsis thaliana kinesin-like protein heavy chain (KP1) mRNA,
           complete cds
          Length = 3607

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 320 ccgtcggaggaggagttccgcctcggcctccgcaacggcc 359
           |||||||| || ||||||  ||||| ||||||||||||||
Sbjct: 184 ccgtcggaagacgagttctccctcgccctccgcaacggcc 223
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 200     ctcagcgaccgcgacctcgc 219
               ||||||||||||||||||||
Sbjct: 1416735 ctcagcgaccgcgacctcgc 1416716



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 291    ccgtcgccgggcgggacctgccgg 314
              ||||||||||||||||| ||||||
Sbjct: 804668 ccgtcgccgggcgggacttgccgg 804691



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 119    cggatggcggaggcggcgtcgctc 142
              ||||||||||| ||||||||||||
Sbjct: 334887 cggatggcggaagcggcgtcgctc 334864
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>ref|XM_750736.1| Aspergillus fumigatus Af293 thioredoxin (Afu2g14960) partial mRNA
          Length = 816

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 348 tccgcaacggccagatcctc 367
           ||||||||||||||||||||
Sbjct: 263 tccgcaacggccagatcctc 282
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>gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1528D07,
             complete sequence
          Length = 87592

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   ggcggaggcggcgtcgctct 143
             ||||||||||||||||||||
Sbjct: 17971 ggcggaggcggcgtcgctct 17990
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>emb|X07645.1|NTALSURB Tobacco acetolactate synthase gene, ALS SuRB (EC 4.1.3.18)
          Length = 2461

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 4   accacccccacaaaaccacc 23
           ||||||||||||||||||||
Sbjct: 521 accacccccacaaaaccacc 540
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>dbj|AK142025.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched
            library, clone:D230005L02 product:RAB36, member RAS
            oncogene family, full insert sequence
          Length = 2954

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 168  tggaggacgtgctgagggag 187
            ||||||||||||||||||||
Sbjct: 1072 tggaggacgtgctgagggag 1091
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>gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1015F07,
             complete sequence
          Length = 127098

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   ggcggaggcggcgtcgctct 143
             ||||||||||||||||||||
Sbjct: 90086 ggcggaggcggcgtcgctct 90105
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 200     ctcagcgaccgcgacctcgc 219
               ||||||||||||||||||||
Sbjct: 3198711 ctcagcgaccgcgacctcgc 3198730
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>dbj|AK038445.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length
           enriched library, clone:A230013B05 product:RAB36, member
           RAS oncogene family, full insert sequence
          Length = 2621

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 tggaggacgtgctgagggag 187
           ||||||||||||||||||||
Sbjct: 701 tggaggacgtgctgagggag 720
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>dbj|AK046113.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230342M03
           product:RAB36, member RAS oncogene family, full insert
           sequence
          Length = 2432

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 tggaggacgtgctgagggag 187
           ||||||||||||||||||||
Sbjct: 509 tggaggacgtgctgagggag 528
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>dbj|AK043946.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length
           enriched library, clone:A830055N12 product:RAB36, member
           RAS oncogene family, full insert sequence
          Length = 1470

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 tggaggacgtgctgagggag 187
           ||||||||||||||||||||
Sbjct: 724 tggaggacgtgctgagggag 743
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>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome
          Length = 195859

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 312  cggaggagccgtcggaggag 331
            ||||||||||||||||||||
Sbjct: 3685 cggaggagccgtcggaggag 3704



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 312  cggaggagccgtcggaggag 331
            ||||||||||||||||||||
Sbjct: 3673 cggaggagccgtcggaggag 3692
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>dbj|AK018269.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
           enriched library, clone:6330593L16 product:RAB36, member
           RAS oncogene family, full insert sequence
          Length = 1465

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 tggaggacgtgctgagggag 187
           ||||||||||||||||||||
Sbjct: 719 tggaggacgtgctgagggag 738
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>gb|AC160402.8| Mus musculus 10 BAC RP23-115L17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 224566

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    tggaggacgtgctgagggag 187
              ||||||||||||||||||||
Sbjct: 158661 tggaggacgtgctgagggag 158642
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 295      cgccgggcgggacctgccggagga 318
                |||||| |||||||||||||||||
Sbjct: 18986423 cgccggacgggacctgccggagga 18986446
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 311      ccggaggagccgtcggaggaggag 334
                |||||||||| |||||||||||||
Sbjct: 27880631 ccggaggagcggtcggaggaggag 27880608
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>gb|AF149204.1|AF149204 Mus musculus Su(var)3-9 homolog Suv39h2 (Suv39h2) gene, partial cds
          Length = 13972

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 272  ctgcgccgcacggtgggggc 291
            ||||||||||||||||||||
Sbjct: 1541 ctgcgccgcacggtgggggc 1522
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 154    cgcggccgccgtggtggagg 173
              ||||||||||||||||||||
Sbjct: 365947 cgcggccgccgtggtggagg 365928
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>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1198_B10
          Length = 119768

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 295   cgccgggcgggacctgccggagga 318
             |||||| |||||||||||||||||
Sbjct: 71343 cgccggacgggacctgccggagga 71366
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 200     ctcagcgaccgcgacctcgc 219
               ||||||||||||||||||||
Sbjct: 6322027 ctcagcgaccgcgacctcgc 6322046
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>dbj|AK122145.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033137O18, full
           insert sequence
          Length = 3441

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 295 cgccgggcgggacctgccggagga 318
           |||||| |||||||||||||||||
Sbjct: 269 cgccggacgggacctgccggagga 292
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>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1051_A08
          Length = 137583

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 295   cgccgggcgggacctgccggagga 318
             |||||| |||||||||||||||||
Sbjct: 11210 cgccggacgggacctgccggagga 11233
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>ref|XM_565819.1| Anopheles gambiae str. PEST ENSANGP00000027638 (ENSANGG00000005584),
            partial mRNA
          Length = 2271

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 162  ccgtggtggaggacgtgctg 181
            ||||||||||||||||||||
Sbjct: 1502 ccgtggtggaggacgtgctg 1521
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>ref|XM_310554.2| Anopheles gambiae str. PEST ENSANGP00000007396 (ENSANGG00000005584),
            partial mRNA
          Length = 3270

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 162  ccgtggtggaggacgtgctg 181
            ||||||||||||||||||||
Sbjct: 1910 ccgtggtggaggacgtgctg 1929
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>dbj|AK109497.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-G12, full
           insert sequence
          Length = 1239

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 124 ggcggaggcggcgtcgctct 143
           ||||||||||||||||||||
Sbjct: 804 ggcggaggcggcgtcgctct 785
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>dbj|AK104313.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-A07, full
           insert sequence
          Length = 1238

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 124 ggcggaggcggcgtcgctct 143
           ||||||||||||||||||||
Sbjct: 827 ggcggaggcggcgtcgctct 808
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>dbj|AK066570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071G07, full
           insert sequence
          Length = 1302

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 124 ggcggaggcggcgtcgctct 143
           ||||||||||||||||||||
Sbjct: 829 ggcggaggcggcgtcgctct 810
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 337     ccgcctcggcctccgcaacggcca 360
               ||||||||||||| ||||||||||
Sbjct: 1457736 ccgcctcggcctcggcaacggcca 1457713
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>emb|AL732620.14| Mouse DNA sequence from clone RP23-167G19 on chromosome 2, complete
              sequence
          Length = 230116

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 272    ctgcgccgcacggtgggggc 291
              ||||||||||||||||||||
Sbjct: 185909 ctgcgccgcacggtgggggc 185928
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 412     ggtcacggcggactcggtcg 431
               ||||||||||||||||||||
Sbjct: 2161078 ggtcacggcggactcggtcg 2161059
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>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
             clone:P0043E01
          Length = 154128

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   ggcggaggcggcgtcgctct 143
             ||||||||||||||||||||
Sbjct: 22988 ggcggaggcggcgtcgctct 23007


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,914,902
Number of Sequences: 3902068
Number of extensions: 2914902
Number of successful extensions: 161038
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 159753
Number of HSP's gapped (non-prelim): 1285
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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