ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl06d01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G01, full insert sequence Length = 3214 Score = 375 bits (189), Expect = e-100 Identities = 303/341 (88%) Strand = Plus / Plus Query: 158 cgtcgcatgcctcgctccctcgccggcgacctcaccgacccggagatggcgcagccctac 217 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 136 cgtcgcatgcctcgctccctcgccggcgacctcaccgatccggagatggcgcagccgtac 195 Query: 218 atgaagaaggacgacgacgactccgacatcgagtactcaccatttttcgggattgagaag 277 ||||||||||| ||||||||| ||| | |||||||| ||||||| |||||||||||| Sbjct: 196 atgaagaaggatgacgacgacgaggacgttgagtactcgccattttatgggattgagaag 255 Query: 278 ggggctgttctgcaggaggcacgggctttccatgatccccagcttgatgccagaagatgc 337 || || ||||||||||||||| |||||||||||||||| |||||||||||||| | ||| Sbjct: 256 ggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgccaggaagtgc 315 Query: 338 tcgcaagttatcaccaagttattatatttaattaaccaaggagagtcctttacaaaggtt 397 |||||||| ||||| ||| |||| |||||| | |||||||| ||| | || ||||||||| Sbjct: 316 tcgcaagtcatcactaagctattgtatttactcaaccaaggggagacattcacaaaggtt 375 Query: 398 gaggccacagaagtcttctttgcagttactaagttattccagtccaatgatgctggtctc 457 |||||||||||||| ||||||||||| || ||| | ||||||||||| ||||||||||| Sbjct: 376 gaggccacagaagttttctttgcagtaacaaagctgttccagtccaaggatgctggtctt 435 Query: 458 aggaggctggtgtatttgatgatcaaagagctttctccatc 498 ||| ||||||||||||| ||||||||||||||||| ||||| Sbjct: 436 aggcggctggtgtatttaatgatcaaagagctttcaccatc 476
>ref|NM_187618.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2481 Score = 293 bits (148), Expect = 3e-76 Identities = 259/296 (87%) Strand = Plus / Plus Query: 203 atggcgcagccctacatgaagaaggacgacgacgactccgacatcgagtactcaccattt 262 ||||||||||| |||||||||||||| ||||||||| ||| | |||||||| |||||| Sbjct: 1 atggcgcagccgtacatgaagaaggatgacgacgacgaggacgttgagtactcgccattt 60 Query: 263 ttcgggattgagaagggggctgttctgcaggaggcacgggctttccatgatccccagctt 322 | |||||||||||||| || ||||||||||||||| |||||||||||||||| |||||| Sbjct: 61 tatgggattgagaagggagccgttctgcaggaggcaagggctttccatgatccgcagctt 120 Query: 323 gatgccagaagatgctcgcaagttatcaccaagttattatatttaattaaccaaggagag 382 |||||||| | ||||||||||| ||||| ||| |||| |||||| | |||||||| ||| Sbjct: 121 gatgccaggaagtgctcgcaagtcatcactaagctattgtatttactcaaccaaggggag 180 Query: 383 tcctttacaaaggttgaggccacagaagtcttctttgcagttactaagttattccagtcc 442 | || ||||||||||||||||||||||| ||||||||||| || ||| | ||||||||| Sbjct: 181 acattcacaaaggttgaggccacagaagttttctttgcagtaacaaagctgttccagtcc 240 Query: 443 aatgatgctggtctcaggaggctggtgtatttgatgatcaaagagctttctccatc 498 || ||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||| Sbjct: 241 aaggatgctggtcttaggcggctggtgtatttaatgatcaaagagctttcaccatc 296
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 137 bits (69), Expect = 4e-29 Identities = 78/81 (96%) Strand = Plus / Plus Query: 158 cgtcgcatgcctcgctccctcgccggcgacctcaccgacccggagatggcgcagccctac 217 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 6644825 cgtcgcatgcctcgctccctcgccggcgacctcaccgatccggagatggcgcagccgtac 6644884 Query: 218 atgaagaaggacgacgacgac 238 ||||||||||| ||||||||| Sbjct: 6644885 atgaagaaggatgacgacgac 6644905 Score = 131 bits (66), Expect = 2e-27 Identities = 96/106 (90%) Strand = Plus / Plus Query: 393 aggttgaggccacagaagtcttctttgcagttactaagttattccagtccaatgatgctg 452 ||||||||||||||||||| ||||||||||| || ||| | ||||||||||| ||||||| Sbjct: 6646358 aggttgaggccacagaagttttctttgcagtaacaaagctgttccagtccaaggatgctg 6646417 Query: 453 gtctcaggaggctggtgtatttgatgatcaaagagctttctccatc 498 |||| ||| ||||||||||||| ||||||||||||||||| ||||| Sbjct: 6646418 gtcttaggcggctggtgtatttaatgatcaaagagctttcaccatc 6646463 Score = 115 bits (58), Expect = 1e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 248 gagtactcaccatttttcgggattgagaagggggctgttctgcaggaggcacgggctttc 307 |||||||| ||||||| |||||||||||||| || ||||||||||||||| |||||||| Sbjct: 6646007 gagtactcgccattttatgggattgagaagggagccgttctgcaggaggcaagggctttc 6646066 Query: 308 catgatccccagcttgatgccagaagatgctcgcaagt 345 |||||||| |||||||||||||| | ||||||||||| Sbjct: 6646067 catgatccgcagcttgatgccaggaagtgctcgcaagt 6646104
>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05, complete sequence Length = 127946 Score = 137 bits (69), Expect = 4e-29 Identities = 78/81 (96%) Strand = Plus / Plus Query: 158 cgtcgcatgcctcgctccctcgccggcgacctcaccgacccggagatggcgcagccctac 217 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 30373 cgtcgcatgcctcgctccctcgccggcgacctcaccgatccggagatggcgcagccgtac 30432 Query: 218 atgaagaaggacgacgacgac 238 ||||||||||| ||||||||| Sbjct: 30433 atgaagaaggatgacgacgac 30453 Score = 131 bits (66), Expect = 2e-27 Identities = 96/106 (90%) Strand = Plus / Plus Query: 393 aggttgaggccacagaagtcttctttgcagttactaagttattccagtccaatgatgctg 452 ||||||||||||||||||| ||||||||||| || ||| | ||||||||||| ||||||| Sbjct: 31906 aggttgaggccacagaagttttctttgcagtaacaaagctgttccagtccaaggatgctg 31965 Query: 453 gtctcaggaggctggtgtatttgatgatcaaagagctttctccatc 498 |||| ||| ||||||||||||| ||||||||||||||||| ||||| Sbjct: 31966 gtcttaggcggctggtgtatttaatgatcaaagagctttcaccatc 32011 Score = 115 bits (58), Expect = 1e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 248 gagtactcaccatttttcgggattgagaagggggctgttctgcaggaggcacgggctttc 307 |||||||| ||||||| |||||||||||||| || ||||||||||||||| |||||||| Sbjct: 31555 gagtactcgccattttatgggattgagaagggagccgttctgcaggaggcaagggctttc 31614 Query: 308 catgatccccagcttgatgccagaagatgctcgcaagt 345 |||||||| |||||||||||||| | ||||||||||| Sbjct: 31615 catgatccgcagcttgatgccaggaagtgctcgcaagt 31652
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 137 bits (69), Expect = 4e-29 Identities = 78/81 (96%) Strand = Plus / Plus Query: 158 cgtcgcatgcctcgctccctcgccggcgacctcaccgacccggagatggcgcagccctac 217 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 6644038 cgtcgcatgcctcgctccctcgccggcgacctcaccgatccggagatggcgcagccgtac 6644097 Query: 218 atgaagaaggacgacgacgac 238 ||||||||||| ||||||||| Sbjct: 6644098 atgaagaaggatgacgacgac 6644118 Score = 131 bits (66), Expect = 2e-27 Identities = 96/106 (90%) Strand = Plus / Plus Query: 393 aggttgaggccacagaagtcttctttgcagttactaagttattccagtccaatgatgctg 452 ||||||||||||||||||| ||||||||||| || ||| | ||||||||||| ||||||| Sbjct: 6645571 aggttgaggccacagaagttttctttgcagtaacaaagctgttccagtccaaggatgctg 6645630 Query: 453 gtctcaggaggctggtgtatttgatgatcaaagagctttctccatc 498 |||| ||| ||||||||||||| ||||||||||||||||| ||||| Sbjct: 6645631 gtcttaggcggctggtgtatttaatgatcaaagagctttcaccatc 6645676 Score = 115 bits (58), Expect = 1e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 248 gagtactcaccatttttcgggattgagaagggggctgttctgcaggaggcacgggctttc 307 |||||||| ||||||| |||||||||||||| || ||||||||||||||| |||||||| Sbjct: 6645220 gagtactcgccattttatgggattgagaagggagccgttctgcaggaggcaagggctttc 6645279 Query: 308 catgatccccagcttgatgccagaagatgctcgcaagt 345 |||||||| |||||||||||||| | ||||||||||| Sbjct: 6645280 catgatccgcagcttgatgccaggaagtgctcgcaagt 6645317
>gb|AC146746.15| Medicago truncatula clone mth2-108p9, complete sequence Length = 95118 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Plus Query: 251 tactcaccatttttcgggattgagaagggggctgttctgcaggaggcacgggctttccat 310 ||||| || ||||| |||||||| |||||||||||||| || ||||| |||| ||| || Sbjct: 24662 tactccccttttttggggattgaaaagggggctgttcttcaagaggcccgggtttttaat 24721 Query: 311 gatccccagcttgatgccagaagatg 336 ||||| || || ||||| || ||||| Sbjct: 24722 gatccacaactagatgctaggagatg 24747 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Plus Query: 393 aggttgaggccacagaagtcttctttgcagttactaagttattccagtc 441 ||||||| ||||||||||| |||||| | ||||| ||| | |||||||| Sbjct: 25167 aggttgaagccacagaagttttcttttctgttaccaagcttttccagtc 25215
>gb|AC145897.3| Pan troglodytes BAC clone RP43-8K4 from 7, complete sequence Length = 153704 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 ttgaggccacagaagtcttct 416 ||||||||||||||||||||| Sbjct: 29610 ttgaggccacagaagtcttct 29590
>emb|CR940310.6| M.truncatula DNA sequence from clone MTH2-5D8 on chromosome 3, complete sequence Length = 121689 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 401 gccacagaagtcttctttgcagttactaagttattccagtc 441 ||||||||||| |||||||| || |||||| | |||||||| Sbjct: 119220 gccacagaagttttctttgctgtcactaagcttttccagtc 119260
>emb|CR769775.11| Human DNA sequence from clone RP11-449H15 on chromosome 9 Contains a novel gene, complete sequence Length = 169430 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 ttgaggccacagaagtcttct 416 ||||||||||||||||||||| Sbjct: 6982 ttgaggccacagaagtcttct 6962
>emb|AL935212.11| Human DNA sequence from clone RP11-160N1 on chromosome 9 Contains eight novel pseudogenes, two novel genes and three CpG islands, complete sequence Length = 181647 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 396 ttgaggccacagaagtcttct 416 ||||||||||||||||||||| Sbjct: 56609 ttgaggccacagaagtcttct 56629
>emb|BX005037.5| Human DNA sequence from clone RP11-34H11 on chromosome 9 Contains two CpG islands, complete sequence Length = 173181 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 ttgaggccacagaagtcttct 416 ||||||||||||||||||||| Sbjct: 165581 ttgaggccacagaagtcttct 165561
>emb|AL627230.15| Human DNA sequence from clone RP11-12A20 on chromosome 9 Contains six novel pseudogenes, the FAM27B gene for family with sequence similarity 27, member B, a pseudogene similar to part of ribosomal protein L10 (RPL10) and four CpG islands, complete sequence Length = 194246 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 396 ttgaggccacagaagtcttct 416 ||||||||||||||||||||| Sbjct: 8137 ttgaggccacagaagtcttct 8157
>emb|AL591926.8| Human DNA sequence from clone RP11-157L3 on chromosome 9 Contains five novel pseudogenes, a pseudogene similar to part of ribosomal protein L10 (RPL10) and two CpG islands, complete sequence Length = 182366 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 396 ttgaggccacagaagtcttct 416 ||||||||||||||||||||| Sbjct: 7611 ttgaggccacagaagtcttct 7631
>emb|AL391987.15| Human DNA sequence from clone RP11-374M1 on chromosome 9 Contains the FAM27C gene for family with sequence similarity 27, member C, three novel genes, five novel pseudogenes and six CpG islands, complete sequence Length = 202081 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 396 ttgaggccacagaagtcttct 416 ||||||||||||||||||||| Sbjct: 72620 ttgaggccacagaagtcttct 72640
>emb|AL390198.17| Human DNA sequence from clone RP13-401N8 on chromosome 20 Contains three novel genes, a vomeronasal organ phermone receptor family pseudogene, a novel zinc-finger pseudogene and nine CpG islands, complete sequence Length = 167717 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 ttgaggccacagaagtcttct 416 ||||||||||||||||||||| Sbjct: 121896 ttgaggccacagaagtcttct 121876
>emb|AL162731.33| Human DNA sequence from clone RP11-292F9 on chromosome 9 Contains four novel genes, three novel pseudogenes and two CpG islands, complete sequence Length = 188062 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 396 ttgaggccacagaagtcttct 416 ||||||||||||||||||||| Sbjct: 29025 ttgaggccacagaagtcttct 29045
>emb|AL078587.18|HSDJ760C5 Human DNA sequence from clone RP4-760C5 on chromosome 20 Contains an exon for a protein similar to ABCC7 (ATP-binding cassette, sub-family C (CFTR/MRP),member 7), two novel genes and two CpG islands, complete sequence Length = 124489 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 396 ttgaggccacagaagtcttct 416 ||||||||||||||||||||| Sbjct: 123679 ttgaggccacagaagtcttct 123699
>gb|AC090894.10| Homo sapiens chromosome 17, clone RP11-744K17, complete sequence Length = 150680 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 ttgaggccacagaagtcttct 416 ||||||||||||||||||||| Sbjct: 140663 ttgaggccacagaagtcttct 140643
>gb|AC129805.7| Homo sapiens 12 BAC RP11-125N22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 165378 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 396 ttgaggccacagaagtcttct 416 ||||||||||||||||||||| Sbjct: 106268 ttgaggccacagaagtcttct 106288
>gb|AC020928.7| Homo sapiens chromosome 19 clone CTD-2162K18, complete sequence Length = 109666 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 ttgaggccacagaagtcttct 416 ||||||||||||||||||||| Sbjct: 29053 ttgaggccacagaagtcttct 29033
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 184 cgacctcaccgacccggagatggcg 208 |||||||||||| |||||||||||| Sbjct: 2798426 cgacctcaccgatccggagatggcg 2798450 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 tcgccggcgacctcaccgacc 197 ||||||||||||||||||||| Sbjct: 167698 tcgccggcgacctcaccgacc 167718
>gb|AC087575.11| Homo sapiens chromosome 17, clone RP11-305L6, complete sequence Length = 198756 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 ttgaggccacagaagtcttct 416 ||||||||||||||||||||| Sbjct: 47072 ttgaggccacagaagtcttct 47052
>emb|AL627306.15| Human DNA sequence from clone RP11-81A9 on chromosome 9, complete sequence Length = 51133 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 396 ttgaggccacagaagtcttct 416 ||||||||||||||||||||| Sbjct: 44152 ttgaggccacagaagtcttct 44172
>gb|AC166159.2| Mus musculus BAC clone RP24-129B16 from chromosome 15, complete sequence Length = 216481 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 gtcctttacaaaggttgagg 401 |||||||||||||||||||| Sbjct: 158484 gtcctttacaaaggttgagg 158503
>gb|AY234384.1|AY234384S1 Rubrivivax gelatinosus strain S1 5' region photosynthesis gene cluster, partial sequence Length = 24637 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cggcgacctcaccgacccgg 200 |||||||||||||||||||| Sbjct: 1930 cggcgacctcaccgacccgg 1949
>ref|XM_598831.2| PREDICTED: Bos taurus similar to PR-domain zinc finger protein 7 (LOC520584), partial mRNA Length = 699 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 agagtcctttacaaaggttg 398 |||||||||||||||||||| Sbjct: 195 agagtcctttacaaaggttg 176
>ref|XM_865806.1| PREDICTED: Bos taurus similar to PR-domain zinc finger protein 7 (LOC614338), partial mRNA Length = 928 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 agagtcctttacaaaggttg 398 |||||||||||||||||||| Sbjct: 228 agagtcctttacaaaggttg 209
>ref|XM_867855.1| PREDICTED: Bos taurus similar to PR-domain zinc finger protein 7 (LOC615918), partial mRNA Length = 1050 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 agagtcctttacaaaggttg 398 |||||||||||||||||||| Sbjct: 183 agagtcctttacaaaggttg 164
>gb|AC131106.4| Mus musculus chromosome 15 clone RP23-301M20, complete sequence Length = 218875 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 gtcctttacaaaggttgagg 401 |||||||||||||||||||| Sbjct: 4660 gtcctttacaaaggttgagg 4679
>gb|AC104789.4| Homo sapiens BAC clone RP11-138B1 from 7, complete sequence Length = 142048 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 405 cagaagtcttctttgcagttacta 428 |||||||||||||| ||||||||| Sbjct: 20248 cagaagtcttctttccagttacta 20271
>gb|AF007402.1|AH006794S09 Mus musculus lysosomal acid lipase gene, intron 6, 5' end Length = 387 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 cccacccgccaccccgctccacca 151 ||||||| |||||||||||||||| Sbjct: 136 cccaccccccaccccgctccacca 159
>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence Length = 141545 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 tcgccggcgacctcaccgac 196 |||||||||||||||||||| Sbjct: 137246 tcgccggcgacctcaccgac 137265
>gb|AC090651.3| Homo sapiens chromosome 15 clone RP11-344A16 map 15q21.3, complete sequence Length = 208230 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 agggggctgttctgcaggag 295 |||||||||||||||||||| Sbjct: 131061 agggggctgttctgcaggag 131042
>gb|AC025916.5| Homo sapiens chromosome 15 clone CTD-2323M6 map 15q21.3, complete sequence Length = 109403 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 agggggctgttctgcaggag 295 |||||||||||||||||||| Sbjct: 27285 agggggctgttctgcaggag 27266
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 tcgccggcgacctcaccgac 196 |||||||||||||||||||| Sbjct: 26360669 tcgccggcgacctcaccgac 26360688
>gb|AF031110.1|AF031110 Mus musculus clone K127 candidate target gene for EVI-1 zinc finger protein Length = 331 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 gttattatatttaattaacc 374 |||||||||||||||||||| Sbjct: 69 gttattatatttaattaacc 88
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 181 cggcgacctcaccgacccggagat 204 |||| ||||||||||||||||||| Sbjct: 7262592 cggccacctcaccgacccggagat 7262615
>gb|AE004775.1| Pseudomonas aeruginosa PAO1, section 336 of 529 of the complete genome Length = 11407 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cgacgacgactccgacatcg 248 |||||||||||||||||||| Sbjct: 3890 cgacgacgactccgacatcg 3909
>ref|XM_573525.1| PREDICTED: Rattus norvegicus similar to 9630058J23Rik protein (LOC498297), mRNA Length = 1325 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 aggacgacgacgactccgac 244 |||||||||||||||||||| Sbjct: 881 aggacgacgacgactccgac 900
>gb|AY880027.1| Pseudomonas aeruginosa alginate biosynthesis protein AlgE (algE) gene, partial cds Length = 1172 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cgacgacgactccgacatcg 248 |||||||||||||||||||| Sbjct: 1050 cgacgacgactccgacatcg 1069
>gb|AC102249.16| Mus musculus chromosome 19, clone RP24-160D21, complete sequence Length = 212190 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 128 cccacccgccaccccgctccacca 151 ||||||| |||||||||||||||| Sbjct: 136094 cccaccccccaccccgctccacca 136071
>gb|AC174770.1| Gasterosteus aculeatus clone VMRC28-84C03, complete sequence Length = 124367 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 tcgctccctcgccggcgacc 188 |||||||||||||||||||| Sbjct: 108070 tcgctccctcgccggcgacc 108051
>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence Length = 171551 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 tcgccggcgacctcaccgac 196 |||||||||||||||||||| Sbjct: 1302 tcgccggcgacctcaccgac 1321
>gb|AC166064.4| Mus musculus BAC clone RP23-52K8 from chromosome 17, complete sequence Length = 245671 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 tgaggccacagaagtcttct 416 |||||||||||||||||||| Sbjct: 10654 tgaggccacagaagtcttct 10635
>emb|AL591946.14| Mouse DNA sequence from clone RP23-290M7 on chromosome 15, complete sequence Length = 188892 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ttctgcaggaggcacgggct 304 |||||||||||||||||||| Sbjct: 165986 ttctgcaggaggcacgggct 165967
>gb|M30880.1|MUSTCBYAJ Mouse T-cell receptor beta-chain V-region (V12-D1.1-J1.1-C0-C2) mRNA, partial cds Length = 281 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 ggccacagaagtcttctttg 419 |||||||||||||||||||| Sbjct: 155 ggccacagaagtcttctttg 174
>gb|M37181.1|PSEALG76 P.aeruginosa alg76 gene, complete cds Length = 2328 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cgacgacgactccgacatcg 248 |||||||||||||||||||| Sbjct: 1579 cgacgacgactccgacatcg 1598
>dbj|AB001942.1| Mus musculus mRNA for TCR beta chain, partial cds Length = 42 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 ggccacagaagtcttctttg 419 |||||||||||||||||||| Sbjct: 21 ggccacagaagtcttctttg 40
>emb|AL669955.6| Mouse DNA sequence from clone RP23-188F1 on chromosome 4, complete sequence Length = 114881 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 415 ctttgcagttactaagttattcca 438 ||||| |||||||||||||||||| Sbjct: 35896 ctttgtagttactaagttattcca 35873 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,075,619 Number of Sequences: 3902068 Number of extensions: 4075619 Number of successful extensions: 81472 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81127 Number of HSP's gapped (non-prelim): 345 length of query: 498 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 476 effective length of database: 17,147,199,772 effective search space: 8162067091472 effective search space used: 8162067091472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
