Clone Name | bastl06c07 |
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Clone Library Name | barley_pub |
>Y2162_ARATH (O22224) Protein At2g41620| Length = 861 Score = 176 bits (445), Expect = 2e-44 Identities = 89/113 (78%), Positives = 104/113 (92%) Frame = +1 Query: 55 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAR 234 W++LL++S+KLLEQAA + FP LQRNLDQLE LS KLKAKT+R EAPSQS++ATRLLAR Sbjct: 10 WTDLLHSSSKLLEQAAPSSQFPPLQRNLDQLEALSKKLKAKTLRNEAPSQSIAATRLLAR 69 Query: 235 EGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIVSSIQEHKR 393 EGINAEQL RDLKSFELKTTFEDVFP+EATSVEEYLQQ+HEMA+VS+IQE ++ Sbjct: 70 EGINAEQLARDLKSFELKTTFEDVFPAEATSVEEYLQQVHEMAMVSAIQEAQK 122
>NUP93_XENLA (Q7ZX96) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) (An4a) Length = 820 Score = 58.2 bits (139), Expect = 5e-09 Identities = 30/114 (26%), Positives = 65/114 (57%), Gaps = 1/114 (0%) Frame = +1 Query: 55 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 231 + ELL + +L + P ++RNL +++ +L++KT+ R S ++ A+ LL Sbjct: 6 FGELLQQAEQLAAETEGVTELPHVERNLQEIQQAGERLRSKTMTRTSQESANVKASVLLG 65 Query: 232 REGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIVSSIQEHKR 393 G++ +++ L+S TTFE + P + T ++ +L+ + A++S+I+E ++ Sbjct: 66 SRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRK 119
>NUP93_BRARE (Q7ZU29) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) (Dead eye protein) Length = 820 Score = 57.4 bits (137), Expect = 8e-09 Identities = 29/114 (25%), Positives = 64/114 (56%), Gaps = 1/114 (0%) Frame = +1 Query: 55 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 231 + ELL + +L + P ++RNL +++ +L+++T+ R + + A+ LL Sbjct: 6 FGELLQQAEQLAAETEAVSELPHVERNLQEIQQAGERLRSRTLTRTSQDTADVKASILLG 65 Query: 232 REGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIVSSIQEHKR 393 G++ +++ L+S TTFE + P + T ++ +L+ + A++S+I+E +R Sbjct: 66 SRGLDIFHISQRLESLSAATTFEPLEPVKDTDIQGFLKNERDNALLSAIEESRR 119
>NUP93_MOUSE (Q8BJ71) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) (CBP-interacting protein 4) Length = 819 Score = 55.5 bits (132), Expect = 3e-08 Identities = 28/114 (24%), Positives = 64/114 (56%), Gaps = 1/114 (0%) Frame = +1 Query: 55 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 231 + ELL + +L + P ++RNL +++ +L+++T+ R + + A+ LL Sbjct: 6 FGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLG 65 Query: 232 REGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIVSSIQEHKR 393 G++ +++ L+S TTFE + P + T ++ +L+ + A++S+I+E ++ Sbjct: 66 SRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRK 119
>NUP93_HUMAN (Q8N1F7) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) Length = 819 Score = 55.5 bits (132), Expect = 3e-08 Identities = 28/114 (24%), Positives = 64/114 (56%), Gaps = 1/114 (0%) Frame = +1 Query: 55 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 231 + ELL + +L + P ++RNL +++ +L+++T+ R + + A+ LL Sbjct: 6 FGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLG 65 Query: 232 REGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIVSSIQEHKR 393 G++ +++ L+S TTFE + P + T ++ +L+ + A++S+I+E ++ Sbjct: 66 SRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRK 119
>NP106_SCHPO (O14310) Nucleoporin npp106 (Nuclear pore protein npp106)| Length = 933 Score = 35.4 bits (80), Expect = 0.033 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 1/94 (1%) Frame = +1 Query: 103 LTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFE 282 L P P +Q L+QLE + L++K + A LLA G+NAEQ + + S Sbjct: 40 LEPQVPVIQYGLNQLEEKARNLESKVLLTR--DGDTKAHYLLAESGMNAEQTRQKIYSIH 97 Query: 283 LKTTFEDVFPSEATSVEEYLQQLHE-MAIVSSIQ 381 + + ++ + + + E+ +L+ +V+SI+ Sbjct: 98 IHSPWDQLELDKKSLYEQPHTKLYNGQNVVASIE 131
>ARGC_CORGL (Q59279) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 347 Score = 33.1 bits (74), Expect = 0.16 Identities = 19/70 (27%), Positives = 30/70 (42%) Frame = +1 Query: 112 HFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFELKT 291 H P + +NL ++ K+ + A P L+ +EG+ AEQ + F + Sbjct: 212 HTPEIAQNLGEVSDKPVKVSFTPVLAPLPRGILTTATAPLKEGVTAEQARAVYEEFYAQE 271 Query: 292 TFEDVFPSEA 321 TF V P A Sbjct: 272 TFVHVLPEGA 281
>TSKS_HUMAN (Q9UJT2) Testis-specific serine kinase substrate (Testis-specific| kinase substrate) (STK22 substrate 1) Length = 592 Score = 31.6 bits (70), Expect = 0.48 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 2/90 (2%) Frame = +1 Query: 88 LEQAALTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQ--LT 261 ++Q LTP P+ QR ++ L + AK +RAEA S +L RL E + A+ LT Sbjct: 479 VKQRGLTPACPSCQRLHKKILELERQALAKHVRAEALSSTL---RLAQDEALRAKNLLLT 535 Query: 262 RDLKSFELKTTFEDVFPSEATSVEEYLQQL 351 +K E T D + S+ ++L L Sbjct: 536 DKMKPEEKMATL-DHLHLKMCSLHDHLSNL 564
>UAFA_STAS1 (Q4A0V8) Uro-adherence factor A precursor| Length = 2316 Score = 30.8 bits (68), Expect = 0.82 Identities = 27/109 (24%), Positives = 49/109 (44%) Frame = +1 Query: 58 SELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLARE 237 SE ++ S L E +++ ++ + E LST T + + S+SLSA+ L+ Sbjct: 1846 SESISASESLSESESISA-----SESISESESLSTSESLSTSESLSESESLSASESLSES 1900 Query: 238 GINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIVSSIQE 384 +E + L E + E + SE+ S E L + ++ S+ E Sbjct: 1901 ESLSE--SESLSESESLSESESLSASESLSASESLSESESLSESESLSE 1947
>UBP24_HUMAN (Q9UPU5) Ubiquitin carboxyl-terminal hydrolase 24 (EC 3.1.2.15)| (Ubiquitin thioesterase 24) (Ubiquitin-specific-processing protease 24) (Deubiquitinating enzyme 24) Length = 1870 Score = 30.8 bits (68), Expect = 0.82 Identities = 27/91 (29%), Positives = 45/91 (49%) Frame = +1 Query: 103 LTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFE 282 L P PA+Q LDQL+ L K KT+ +E+ SQS + L +++Q + S Sbjct: 357 LIPTDPAIQEALDQLDSLGRK---KTLLSESSSQSSKSPSL------SSKQQHQPSASSI 407 Query: 283 LKTTFEDVFPSEATSVEEYLQQLHEMAIVSS 375 L++ F P +T + L+ + ++SS Sbjct: 408 LESLFRSFAPGMST-----FRVLYNLEVLSS 433
>DRL20_ARATH (Q9SH22) Putative disease resistance protein At1g63360| Length = 884 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/67 (28%), Positives = 34/67 (50%) Frame = +1 Query: 136 LDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFELKTTFEDVFPS 315 L+ LE+L+T + + + + + LS +RLL G + L R L+S + T F Sbjct: 663 LEHLEILTTTIDPRAKQFLSSHRLLSHSRLLEIYGSSVSSLNRHLESLSVSTDKLREFQI 722 Query: 316 EATSVEE 336 ++ S+ E Sbjct: 723 KSCSISE 729
>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 348 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -3 Query: 241 SPRAPATWWRRATVTAPRRGSSWP 170 SPRA W+R+T P R S WP Sbjct: 192 SPRATPPTWQRSTSMPPSRASPWP 215
>YG1F_YEAST (P53214) Hypothetical 57.5 kDa protein in VMA7-RPS25A intergenic| region Length = 551 Score = 29.3 bits (64), Expect = 2.4 Identities = 24/75 (32%), Positives = 41/75 (54%) Frame = -2 Query: 368 TIAIS*SCCRYSSTEVASDGKTSSKVVLSSNDLRSLVSCSALIPSRASNLVAESDCDGAS 189 ++ +S S SS+EV S +SS + S+ +++S S+ +P+ VA + AS Sbjct: 107 SMQVSSSSTSSSSSEVTSSSSSSS--ISPSSSSSTIISSSSSLPTFT---VASTSSTVAS 161 Query: 188 ARIVLALSLVESTSS 144 + + + SLV STSS Sbjct: 162 STLSTSSSLVISTSS 176
>PHZI_PSEFL (Q51785) Autoinducer synthesis protein phzI| Length = 196 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = -2 Query: 299 SKVVLSSNDLRSLVSCSALIPSRASNL---VAESDCDGASAR 183 ++ +L+ N+ RS+V C+ LIP+ NL V C GA R Sbjct: 54 ARYLLAFNEHRSIVGCARLIPTTFPNLLEGVFSHACAGAPPR 95
>DNAS1_CHICK (Q9YGI5) Deoxyribonuclease-1 precursor (EC 3.1.21.1)| (Deoxyribonuclease I) (DNase I) Length = 282 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -2 Query: 272 LRSLVSCSALIPSRASNLVAESDC 201 LRSL SC LIP A V +DC Sbjct: 206 LRSLSSCEWLIPDSADTTVTSTDC 229
>ILVH_MYCLE (O33113) Acetolactate synthase small subunit (EC 2.2.1.6) (AHAS)| (Acetohydroxy-acid synthase small subunit) (ALS) Length = 169 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/67 (23%), Positives = 28/67 (41%) Frame = +1 Query: 190 EAPSQSLSATRLLAREGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIV 369 + P L +R G N E L + + V +E T +E+ +QLH++ V Sbjct: 15 DTPGVLARVAALFSRRGFNIESLAVGATECKTMSRMTIVVSAEETPLEQVTKQLHKLINV 74 Query: 370 SSIQEHK 390 + E + Sbjct: 75 IKVVEQE 81
>SYC_HALSA (Q9HQL9) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 494 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +1 Query: 211 SATRLLAREGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMA--IVSSIQE 384 + + +A G N ++ S+ + T+ + SEAT E LQ+ HE A + S+ Sbjct: 297 TVSNAVAERGPNVVRMLLVSTSYTQRQTYSEATVSEATQRWERLQRAHERAADAIDSVAA 356 Query: 385 HKR 393 H + Sbjct: 357 HAK 359
>PDXT_METAC (Q8TQH7) Glutamine amidotransferase subunit pdxT (EC 2.6.-.-)| (Glutamine amidotransferase glutaminase subunit pdxT) Length = 199 Score = 28.1 bits (61), Expect = 5.3 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%) Frame = +1 Query: 94 QAALTPHFPALQRNLDQ--LEVLSTKLKAKTIRAEAPS------QSLSATRLLAREGINA 249 Q A++ H AL+R L + +E ++K K I E +S + RLLAREGI Sbjct: 9 QGAVSEHVDALRRALAERGVEAEVVEIKHKGIVPECSGIVIPGGESTTLCRLLAREGIGE 68 Query: 250 E 252 E Sbjct: 69 E 69
>BGAL_STRTR (P23989) Beta-galactosidase (EC 3.2.1.23) (Lactase)| Length = 1026 Score = 27.7 bits (60), Expect = 6.9 Identities = 21/89 (23%), Positives = 41/89 (46%) Frame = +1 Query: 103 LTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFE 282 LTP ++ +++ + K+ TI+ + + LSA LAR + +++ F+ Sbjct: 621 LTPKLQTVKHLYSNIKIAVDE-KSVTIKNDNLFEDLSAYTFLARVYEDGRKVSESEYHFD 679 Query: 283 LKTTFEDVFPSEATSVEEYLQQLHEMAIV 369 +K E FP +Q++E+A V Sbjct: 680 VKPGEEATFPVNFVVEASNSEQIYEVACV 708
>PDXT_METMA (Q8PUA4) Glutamine amidotransferase subunit pdxT (EC 2.6.-.-)| (Glutamine amidotransferase glutaminase subunit pdxT) Length = 199 Score = 27.7 bits (60), Expect = 6.9 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%) Frame = +1 Query: 94 QAALTPHFPALQRNLDQ--LEVLSTKLKAKTIRAEAPS------QSLSATRLLAREGINA 249 Q A++ H AL+R L + +E ++K K I E +S + RLLAREGI Sbjct: 9 QGAVSEHVDALRRALKERGVEAEVVEIKHKGIVPECSGIVIPGGESTTLCRLLAREGIAE 68 Query: 250 E 252 E Sbjct: 69 E 69
>YKM1_SCHPO (Q9C0Z1) Putative transcriptional regulatory protein PB24D3.01| Length = 594 Score = 27.3 bits (59), Expect = 9.0 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = +1 Query: 64 LLNTSTKLLEQAALTPHFPALQRNL-DQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREG 240 LL S++ L++ FP+L + D +++TKLK + R E PSQ S L + Sbjct: 104 LLKNSSEPLDRTE-RKDFPSLAMQIRDANSLVNTKLKEYSRRFELPSQKTSFDDLFSSTF 162 Query: 241 INAEQLTRDLKSFELKTTFEDV 306 N + +D+ E FE+V Sbjct: 163 PNFDAAFKDIPDKE--WAFENV 182
>METK_WOLSU (Q7M7Z2) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) (MAT) Length = 386 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -2 Query: 230 ASNLVAESDCDGASARIVLALSLVESTS 147 A NLVA CD A+ +I A+ +VE S Sbjct: 283 AKNLVASGVCDKATIQIAYAIGVVEPVS 310
>FAF_DROME (P55824) Probable ubiquitin carboxyl-terminal hydrolase FAF (EC| 3.1.2.15) (Ubiquitin thioesterase FAF) (Ubiquitin specific-processing protease FAF) (Deubiquitinating enzyme FAF) (Protein fat facets) Length = 2778 Score = 27.3 bits (59), Expect = 9.0 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%) Frame = +1 Query: 82 KLLEQAALTPHF-PALQRNLDQLEVLSTKLKAKTIRAEAPSQSLS----ATRLLAREGIN 246 +LL A + +F P LD L+ + + + ++ E + ++ + RLLA Sbjct: 337 ELLMPATIAKYFMPTWNVVLDLLDSFTDEELKREVKPEGRNDYINGIVKSARLLASRLTG 396 Query: 247 AEQLTRDLKSFELK 288 E+L RDL+ F LK Sbjct: 397 QEELIRDLEMFRLK 410
>SYE_LACLA (Q9CDZ7) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 483 Score = 27.3 bits (59), Expect = 9.0 Identities = 8/25 (32%), Positives = 18/25 (72%) Frame = -1 Query: 330 DRSCFRWKNILKGGLEFE*LEVSGE 256 +++ ++W +I+KG +EFE + G+ Sbjct: 162 EKAIYKWNDIVKGDIEFEGKNIGGD 186
>RPOA1_METTH (O27125) DNA-directed RNA polymerase subunit A' (EC 2.7.7.6)| Length = 870 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 Query: 171 GQDDPRRGAVTVALRHQVAGARGDQC 248 G DPR G + +LR + GA+G +C Sbjct: 45 GLMDPRLGVIDPSLRCRTCGAKGGEC 70
>ISPF_PORGI (Q7MXX0) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC| 4.6.1.12) (MECPS) (MECDP-synthase) Length = 162 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Frame = +1 Query: 76 STKLLEQAALTPHFPALQRNLD---QLEVLSTKLKAKT 180 +T EQ L PH P +QR L Q+EV LKA T Sbjct: 100 ATIAAEQPKLNPHIPDMQRVLAEVIQVEVSDISLKATT 137
>FABH2_BACAN (Q81JF6) 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 (EC| 2.3.1.41) (3-oxoacyl-[acyl-carrier-protein] synthase III protein 2) (Beta-ketoacyl-ACP synthase III 2) (KAS III 2) Length = 327 Score = 27.3 bits (59), Expect = 9.0 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Frame = +1 Query: 139 DQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFELKTTFED-VFPS 315 D+ V T +K + I +E S A + + ++ D+ + TT D VFPS Sbjct: 32 DEWIVQRTGMKERRIASEDEYSSNLAIKAVENLCTTYKKNLEDVDCIIVATTTADYVFPS 91 Query: 316 EATSVEEYLQQLHEMA 363 A +++Y H MA Sbjct: 92 VACQIQQYFNIPHTMA 107
>RPOB_MESFL (Q6F0L7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1284 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/53 (33%), Positives = 29/53 (54%) Frame = +1 Query: 91 EQAALTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINA 249 E+ + F ++ + LEV +TK A+ I +E P+ S +A + L EGI A Sbjct: 849 ERVIMEDKFTSVHIDEYVLEVRNTKQGAEEITSEIPNISDNAKKYLDNEGIVA 901 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.125 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,041,468 Number of Sequences: 219361 Number of extensions: 614373 Number of successful extensions: 1664 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 1654 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1664 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)