Clone Name | bastl06c06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP000907.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-708L7, complete sequence Length = 176273 Score = 42.1 bits (21), Expect = 0.70 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 ggtcaggggcaggggcagcgt 176 ||||||||||||||||||||| Sbjct: 161004 ggtcaggggcaggggcagcgt 161024
>dbj|AP002007.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-762O23, complete sequence Length = 168922 Score = 42.1 bits (21), Expect = 0.70 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 ggtcaggggcaggggcagcgt 176 ||||||||||||||||||||| Sbjct: 76483 ggtcaggggcaggggcagcgt 76503
>ref|NM_195831.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015I18.15), mRNA Length = 645 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ctcgccgtcgtccgccgcgg 157 |||||||||||||||||||| Sbjct: 88 ctcgccgtcgtccgccgcgg 107
>ref|XM_655383.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2871.2), mRNA Length = 2613 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 caggggcaggggcagcgtca 178 |||||||||||||||||||| Sbjct: 829 caggggcaggggcagcgtca 810
>gb|AY597281.1| Pseudomonas viridiflava strain ME3.1b pathogenicity island PAI-Region-2, partial sequence Length = 39776 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tgccgcccagcggtcccagc 202 |||||||||||||||||||| Sbjct: 12471 tgccgcccagcggtcccagc 12452
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 ccagcggtcccagcagcgca 208 |||||||||||||||||||| Sbjct: 580878 ccagcggtcccagcagcgca 580897
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 caggggcaggggcagcgtca 178 |||||||||||||||||||| Sbjct: 58629 caggggcaggggcagcgtca 58648
>gb|AC090482.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0015I18, from chromosome 10, complete sequence Length = 161479 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 ctcgccgtcgtccgccgcgg 157 |||||||||||||||||||| Sbjct: 61229 ctcgccgtcgtccgccgcgg 61210
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ctcgccgtcgtccgccgcgg 157 |||||||||||||||||||| Sbjct: 9305188 ctcgccgtcgtccgccgcgg 9305207
>gb|AC161790.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0011F12, complete sequence Length = 122262 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ctcgccgtcgtccgccgcgg 157 |||||||||||||||||||| Sbjct: 23031 ctcgccgtcgtccgccgcgg 23050
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 gcggtgctcgccgtcgtccg 151 |||||||||||||||||||| Sbjct: 1447061 gcggtgctcgccgtcgtccg 1447042
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ctcgccgtcgtccgccgcgg 157 |||||||||||||||||||| Sbjct: 9310327 ctcgccgtcgtccgccgcgg 9310346 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 549,743 Number of Sequences: 3902068 Number of extensions: 549743 Number of successful extensions: 56655 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56318 Number of HSP's gapped (non-prelim): 337 length of query: 218 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 196 effective length of database: 17,147,199,772 effective search space: 3360851155312 effective search space used: 3360851155312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)