ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl06c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP000907.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 0.70
2dbj|AP002007.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 0.70
3ref|NM_195831.1| Oryza sativa (japonica cultivar-group) hypothet... 40 2.8
4ref|XM_655383.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 2.8
5gb|AY597281.1| Pseudomonas viridiflava strain ME3.1b pathogenici... 40 2.8
6gb|CP000088.1| Thermobifida fusca YX, complete genome 40 2.8
7gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 2.8
8gb|AC090482.3| Genomic sequence for Oryza sativa, Nipponbare str... 40 2.8
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
10gb|AC161790.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8
11gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 2.8
12gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8

>dbj|AP000907.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-708L7, complete
              sequence
          Length = 176273

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 156    ggtcaggggcaggggcagcgt 176
              |||||||||||||||||||||
Sbjct: 161004 ggtcaggggcaggggcagcgt 161024



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>dbj|AP002007.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-762O23, complete
             sequence
          Length = 168922

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 156   ggtcaggggcaggggcagcgt 176
             |||||||||||||||||||||
Sbjct: 76483 ggtcaggggcaggggcagcgt 76503



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>ref|NM_195831.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0015I18.15), mRNA
          Length = 645

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 138 ctcgccgtcgtccgccgcgg 157
           ||||||||||||||||||||
Sbjct: 88  ctcgccgtcgtccgccgcgg 107



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>ref|XM_655383.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2871.2), mRNA
          Length = 2613

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 159 caggggcaggggcagcgtca 178
           ||||||||||||||||||||
Sbjct: 829 caggggcaggggcagcgtca 810



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>gb|AY597281.1| Pseudomonas viridiflava strain ME3.1b pathogenicity island
             PAI-Region-2, partial sequence
          Length = 39776

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   tgccgcccagcggtcccagc 202
             ||||||||||||||||||||
Sbjct: 12471 tgccgcccagcggtcccagc 12452



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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    ccagcggtcccagcagcgca 208
              ||||||||||||||||||||
Sbjct: 580878 ccagcggtcccagcagcgca 580897



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   caggggcaggggcagcgtca 178
             ||||||||||||||||||||
Sbjct: 58629 caggggcaggggcagcgtca 58648



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>gb|AC090482.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0015I18, from chromosome 10, complete sequence
          Length = 161479

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   ctcgccgtcgtccgccgcgg 157
             ||||||||||||||||||||
Sbjct: 61229 ctcgccgtcgtccgccgcgg 61210



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 138     ctcgccgtcgtccgccgcgg 157
               ||||||||||||||||||||
Sbjct: 9305188 ctcgccgtcgtccgccgcgg 9305207



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>gb|AC161790.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0011F12, complete sequence
          Length = 122262

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   ctcgccgtcgtccgccgcgg 157
             ||||||||||||||||||||
Sbjct: 23031 ctcgccgtcgtccgccgcgg 23050



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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 132     gcggtgctcgccgtcgtccg 151
               ||||||||||||||||||||
Sbjct: 1447061 gcggtgctcgccgtcgtccg 1447042



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 138     ctcgccgtcgtccgccgcgg 157
               ||||||||||||||||||||
Sbjct: 9310327 ctcgccgtcgtccgccgcgg 9310346


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 549,743
Number of Sequences: 3902068
Number of extensions: 549743
Number of successful extensions: 56655
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56318
Number of HSP's gapped (non-prelim): 337
length of query: 218
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 196
effective length of database: 17,147,199,772
effective search space: 3360851155312
effective search space used: 3360851155312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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