Clone Name | bastl06c02 |
---|---|
Clone Library Name | barley_pub |
>CYTSA_CANFA (Q2KNA0) Cytospin-A| Length = 1117 Score = 30.4 bits (67), Expect = 2.1 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = +3 Query: 3 TITKAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 137 T+ K+F S+S+ + A+ +P + SP+ T P A+ P R S Sbjct: 843 TLIKSFDSASQVPNPTAAAIPRTPLSPSPMKTPPAAAVSPMQRHS 887
>CYTSA_RAT (Q2KN99) Cytospin-A| Length = 1118 Score = 30.0 bits (66), Expect = 2.8 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = +3 Query: 3 TITKAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 137 T+ K+F S+S+ + A+ +P + SP+ T P A+ P R S Sbjct: 844 TLIKSFDSASQVPNAAAAAIPRTPLSPSPMKTPPAAAVSPMQRHS 888
>CYTSA_MOUSE (Q2KN98) Cytospin-A| Length = 1118 Score = 30.0 bits (66), Expect = 2.8 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = +3 Query: 3 TITKAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 137 T+ K+F S+S+ + A+ +P + SP+ T P A+ P R S Sbjct: 844 TLIKSFDSASQVPNAAAAAIPRTPLSPSPMKTPPAAAVSPMQRHS 888
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 29.6 bits (65), Expect = 3.6 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = +3 Query: 15 AFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRP 134 A PS+++ + PA A PA P P AEP +P Sbjct: 137 AAPSAAKSGSAPKPAAAAKPAFSGPTPGDAAKKAEPAAKP 176
>CYTSA_PANTR (Q2KNA1) Cytospin-A| Length = 1117 Score = 29.6 bits (65), Expect = 3.6 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = +3 Query: 3 TITKAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 137 T+ K+F S+S+ + A+ +P + SP+ T P A+ P R S Sbjct: 843 TLIKSFDSASQVPNPAAAAIPRTPLSPSPMKTPPAAAVSPMQRHS 887
>CYTSA_HUMAN (Q69YQ0) Cytospin-A (NY-REN-22 antigen)| Length = 1117 Score = 29.6 bits (65), Expect = 3.6 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = +3 Query: 3 TITKAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 137 T+ K+F S+S+ + A+ +P + SP+ T P A+ P R S Sbjct: 843 TLIKSFDSASQVPNPAAAAIPRTPLSPSPMKTPPAAAVSPMQRHS 887
>MUA1_XENLA (P10667) Integumentary mucin A.1 precursor (FIM-A.1)| (Preprospasmolysin) Length = 400 Score = 29.3 bits (64), Expect = 4.7 Identities = 13/45 (28%), Positives = 22/45 (48%) Frame = +3 Query: 3 TITKAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 137 T P ++ TT ++ A + +PTTP+ + EP T P+ Sbjct: 215 TTVPTTPETTTVPTTPETTTASTTAETTTVPTTPETTTEPTTTPT 259
>PIN6_ORYSA (Q5JLM1) Probable auxin efflux carrier component 6 (OsPIN6)| Length = 363 Score = 29.3 bits (64), Expect = 4.7 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -1 Query: 142 ATLGLVRGSAEASGVVGRGEKAAGDATRAGELVVSS 35 A +G+ AEA+ G+ +AAG A AG +VV++ Sbjct: 159 AAIGMYVDGAEAAAAAGKDVEAAGAAAAAGTVVVAA 194
>GP1BA_HUMAN (P07359) Platelet glycoprotein Ib alpha chain precursor| (Glycoprotein Ibalpha) (GP-Ib alpha) (GPIbA) (GPIb-alpha) (Antigen CD42b-alpha) (CD42b antigen) [Contains: Glycocalicin] Length = 626 Score = 28.9 bits (63), Expect = 6.2 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +3 Query: 9 TKAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 137 T+ PS + E PA + +P PTTP+ ++EP P+ Sbjct: 380 TEPTPSPTTSEPVPEPAPNMTTLEPTPSPTTPEPTSEPAPSPT 422
>GGA3_HUMAN (Q9NZ52) ADP-ribosylation factor-binding protein GGA3| (Golgi-localized, gamma ear-containing, ARF-binding protein 3) Length = 723 Score = 28.9 bits (63), Expect = 6.2 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 6/39 (15%) Frame = +3 Query: 39 ETTNSPALVASPAAFSP------LPTTPDASAEPRTRPS 137 +TTNS + V +PA P LP P AS PR+R S Sbjct: 333 DTTNSLSSVLAPAPTPPSSGIPILPPPPQASGPPRSRSS 371
>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of| white-apricot homolog 2) Length = 659 Score = 28.5 bits (62), Expect = 8.1 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Frame = +2 Query: 35 RRDDQFARPRRVAGRLLPPPHHARRLRGTANETQRSESR-----LGRARAP 172 RR + R +R+ GR + PP +ARR T + +RS S R+R+P Sbjct: 253 RRQRREFREKRLRGRKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSP 303
>CYTSA_CHICK (Q2KN97) Cytospin-A| Length = 1118 Score = 28.5 bits (62), Expect = 8.1 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = +3 Query: 3 TITKAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 137 T+ K+F S+S+ + + + +P + SP+ T P A+ P R S Sbjct: 844 TLIKSFDSASQVPSPAAATIPRTPLSPSPMKTPPAAAVSPMQRHS 888
>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of| white-apricot homolog 2) (Clk4-associating SR-related protein) Length = 653 Score = 28.5 bits (62), Expect = 8.1 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Frame = +2 Query: 35 RRDDQFARPRRVAGRLLPPPHHARRLRGTANETQRSESR-----LGRARAP 172 RR + R +R+ GR + PP +ARR T + +RS S R+R+P Sbjct: 253 RRQRREFREKRLRGRKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSP 303
>GEI8_CAEEL (P34333) Gex-3-interacting protein 8| Length = 1780 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 14/53 (26%) Frame = +3 Query: 6 ITKAFPSSSRDETTNSPALVASP--------------AAFSPLPTTPDASAEP 122 I+ A P ++ +TT+SPAL+A P +P P P A++ P Sbjct: 809 ISGAAPQFTQQQTTHSPALIAQPIPQQLIPQRVSTPAQILTPTPVRPTAASTP 861
>NQRE_CHLTR (O84283) Probable Na(+)-translocating NADH-quinone reductase| subunit E (EC 1.6.5.-) (Na(+)-translocating NQR subunit E) (Na(+)-NQR subunit E) (NQR complex subunit E) (NQR-1 subunit E) Length = 244 Score = 28.5 bits (62), Expect = 8.1 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 42 TTNSPALVASPAAFSPLPTTPDASAEPR 125 TT+ PA V + A SP P T +S EP+ Sbjct: 215 TTSKPAFVTNIATDSPQPNTHSSSEEPK 242
>PAG2_PIG (Q29079) Pregnancy-associated glycoprotein 2 precursor (EC| 3.4.23.-) (PAG 2) Length = 420 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -1 Query: 139 TLGLVRGSAEASGVVGRGEKAAGDATRAGELVVSSREEEGKA 14 ++ L GS + SG +G+ G T G+ S+EE GKA Sbjct: 132 SIKLEYGSGKMSGFLGQDTVRIGQLTSTGQAFGLSKEETGKA 173 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,679,018 Number of Sequences: 219361 Number of extensions: 525764 Number of successful extensions: 3045 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2833 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3041 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)