ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl06c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CYTSA_CANFA (Q2KNA0) Cytospin-A 30 2.1
2CYTSA_RAT (Q2KN99) Cytospin-A 30 2.8
3CYTSA_MOUSE (Q2KN98) Cytospin-A 30 2.8
4IF2_CORGL (Q8NP40) Translation initiation factor IF-2 30 3.6
5CYTSA_PANTR (Q2KNA1) Cytospin-A 30 3.6
6CYTSA_HUMAN (Q69YQ0) Cytospin-A (NY-REN-22 antigen) 30 3.6
7MUA1_XENLA (P10667) Integumentary mucin A.1 precursor (FIM-A.1) ... 29 4.7
8PIN6_ORYSA (Q5JLM1) Probable auxin efflux carrier component 6 (O... 29 4.7
9GP1BA_HUMAN (P07359) Platelet glycoprotein Ib alpha chain precur... 29 6.2
10GGA3_HUMAN (Q9NZ52) ADP-ribosylation factor-binding protein GGA3... 29 6.2
11SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (S... 28 8.1
12CYTSA_CHICK (Q2KN97) Cytospin-A 28 8.1
13SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (S... 28 8.1
14GEI8_CAEEL (P34333) Gex-3-interacting protein 8 28 8.1
15NQRE_CHLTR (O84283) Probable Na(+)-translocating NADH-quinone re... 28 8.1
16PAG2_PIG (Q29079) Pregnancy-associated glycoprotein 2 precursor ... 28 8.1

>CYTSA_CANFA (Q2KNA0) Cytospin-A|
          Length = 1117

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 3   TITKAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 137
           T+ K+F S+S+     + A+  +P + SP+ T P A+  P  R S
Sbjct: 843 TLIKSFDSASQVPNPTAAAIPRTPLSPSPMKTPPAAAVSPMQRHS 887



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>CYTSA_RAT (Q2KN99) Cytospin-A|
          Length = 1118

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 3   TITKAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 137
           T+ K+F S+S+     + A+  +P + SP+ T P A+  P  R S
Sbjct: 844 TLIKSFDSASQVPNAAAAAIPRTPLSPSPMKTPPAAAVSPMQRHS 888



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>CYTSA_MOUSE (Q2KN98) Cytospin-A|
          Length = 1118

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 3   TITKAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 137
           T+ K+F S+S+     + A+  +P + SP+ T P A+  P  R S
Sbjct: 844 TLIKSFDSASQVPNAAAAAIPRTPLSPSPMKTPPAAAVSPMQRHS 888



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>IF2_CORGL (Q8NP40) Translation initiation factor IF-2|
          Length = 1004

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 15  AFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRP 134
           A PS+++  +   PA  A PA   P P      AEP  +P
Sbjct: 137 AAPSAAKSGSAPKPAAAAKPAFSGPTPGDAAKKAEPAAKP 176



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>CYTSA_PANTR (Q2KNA1) Cytospin-A|
          Length = 1117

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 3   TITKAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 137
           T+ K+F S+S+     + A+  +P + SP+ T P A+  P  R S
Sbjct: 843 TLIKSFDSASQVPNPAAAAIPRTPLSPSPMKTPPAAAVSPMQRHS 887



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>CYTSA_HUMAN (Q69YQ0) Cytospin-A (NY-REN-22 antigen)|
          Length = 1117

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 3   TITKAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 137
           T+ K+F S+S+     + A+  +P + SP+ T P A+  P  R S
Sbjct: 843 TLIKSFDSASQVPNPAAAAIPRTPLSPSPMKTPPAAAVSPMQRHS 887



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>MUA1_XENLA (P10667) Integumentary mucin A.1 precursor (FIM-A.1)|
           (Preprospasmolysin)
          Length = 400

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 3   TITKAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 137
           T     P ++   TT      ++ A  + +PTTP+ + EP T P+
Sbjct: 215 TTVPTTPETTTVPTTPETTTASTTAETTTVPTTPETTTEPTTTPT 259



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>PIN6_ORYSA (Q5JLM1) Probable auxin efflux carrier component 6 (OsPIN6)|
          Length = 363

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 142 ATLGLVRGSAEASGVVGRGEKAAGDATRAGELVVSS 35
           A +G+    AEA+   G+  +AAG A  AG +VV++
Sbjct: 159 AAIGMYVDGAEAAAAAGKDVEAAGAAAAAGTVVVAA 194



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>GP1BA_HUMAN (P07359) Platelet glycoprotein Ib alpha chain precursor|
           (Glycoprotein Ibalpha) (GP-Ib alpha) (GPIbA)
           (GPIb-alpha) (Antigen CD42b-alpha) (CD42b antigen)
           [Contains: Glycocalicin]
          Length = 626

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 9   TKAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 137
           T+  PS +  E    PA   +    +P PTTP+ ++EP   P+
Sbjct: 380 TEPTPSPTTSEPVPEPAPNMTTLEPTPSPTTPEPTSEPAPSPT 422



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>GGA3_HUMAN (Q9NZ52) ADP-ribosylation factor-binding protein GGA3|
           (Golgi-localized, gamma ear-containing, ARF-binding
           protein 3)
          Length = 723

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = +3

Query: 39  ETTNSPALVASPAAFSP------LPTTPDASAEPRTRPS 137
           +TTNS + V +PA   P      LP  P AS  PR+R S
Sbjct: 333 DTTNSLSSVLAPAPTPPSSGIPILPPPPQASGPPRSRSS 371



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>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2)
          Length = 659

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = +2

Query: 35  RRDDQFARPRRVAGRLLPPPHHARRLRGTANETQRSESR-----LGRARAP 172
           RR  +  R +R+ GR + PP +ARR   T +  +RS S        R+R+P
Sbjct: 253 RRQRREFREKRLRGRKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSP 303



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>CYTSA_CHICK (Q2KN97) Cytospin-A|
          Length = 1118

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 3   TITKAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 137
           T+ K+F S+S+  +  +  +  +P + SP+ T P A+  P  R S
Sbjct: 844 TLIKSFDSASQVPSPAAATIPRTPLSPSPMKTPPAAAVSPMQRHS 888



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>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2) (Clk4-associating SR-related
           protein)
          Length = 653

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = +2

Query: 35  RRDDQFARPRRVAGRLLPPPHHARRLRGTANETQRSESR-----LGRARAP 172
           RR  +  R +R+ GR + PP +ARR   T +  +RS S        R+R+P
Sbjct: 253 RRQRREFREKRLRGRKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSP 303



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>GEI8_CAEEL (P34333) Gex-3-interacting protein 8|
          Length = 1780

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 14/53 (26%)
 Frame = +3

Query: 6   ITKAFPSSSRDETTNSPALVASP--------------AAFSPLPTTPDASAEP 122
           I+ A P  ++ +TT+SPAL+A P                 +P P  P A++ P
Sbjct: 809 ISGAAPQFTQQQTTHSPALIAQPIPQQLIPQRVSTPAQILTPTPVRPTAASTP 861



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>NQRE_CHLTR (O84283) Probable Na(+)-translocating NADH-quinone reductase|
           subunit E (EC 1.6.5.-) (Na(+)-translocating NQR subunit
           E) (Na(+)-NQR subunit E) (NQR complex subunit E) (NQR-1
           subunit E)
          Length = 244

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 42  TTNSPALVASPAAFSPLPTTPDASAEPR 125
           TT+ PA V + A  SP P T  +S EP+
Sbjct: 215 TTSKPAFVTNIATDSPQPNTHSSSEEPK 242



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>PAG2_PIG (Q29079) Pregnancy-associated glycoprotein 2 precursor (EC|
           3.4.23.-) (PAG 2)
          Length = 420

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 139 TLGLVRGSAEASGVVGRGEKAAGDATRAGELVVSSREEEGKA 14
           ++ L  GS + SG +G+     G  T  G+    S+EE GKA
Sbjct: 132 SIKLEYGSGKMSGFLGQDTVRIGQLTSTGQAFGLSKEETGKA 173


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,679,018
Number of Sequences: 219361
Number of extensions: 525764
Number of successful extensions: 3045
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3041
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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