ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl06c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SASH1_MOUSE (P59808) SAM and SH3 domain-containing protein 1 37 0.037
2CAN5_MOUSE (O08688) Calpain-5 (EC 3.4.22.-) (nCL-3) 29 5.9
3CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22 29 7.7

>SASH1_MOUSE (P59808) SAM and SH3 domain-containing protein 1|
          Length = 1230

 Score = 36.6 bits (83), Expect = 0.037
 Identities = 27/91 (29%), Positives = 37/91 (40%)
 Frame = +3

Query: 150 D*CKMVTVHGFANGTSDGTANRKIKRLFNSSERKNPTNFQFERHVARLESRQQQQPRRCI 329
           D  K   +H   N T      R  K+L    E K P+    E HV   E+   Q  R  +
Sbjct: 247 DSVKFKRLHKLVNST-----RRVRKKLIRVEEMKKPSAEGGEEHV--FENSPVQDERSAL 299

Query: 330 FTTILPIEFFHTSSEPTSPEDSLDSASSPPS 422
           ++ +    FF+  S    PED  DS +  PS
Sbjct: 300 YSGVHKKPFFYDGSPEKPPEDDADSLTPSPS 330



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>CAN5_MOUSE (O08688) Calpain-5 (EC 3.4.22.-) (nCL-3)|
          Length = 640

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
 Frame = -3

Query: 436 CKKIIDGGEDAESR------------LSSGDVGSDEVWKNSIGKIVVKIHRLG 314
           C + +DGG  A++             L+ GD+ +DE  +N + + V+K+H  G
Sbjct: 173 CYQALDGGNTADALVDFTGGVSEPIDLTEGDLATDEAKRNQLFERVLKVHSRG 225



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>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 156 ISRWPPRQGGGRSCRSAPLRSQS 88
           +SR PPR+G GRS    P RS+S
Sbjct: 749 LSRTPPRRGRGRSYSRTPSRSRS 771


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,232,056
Number of Sequences: 219361
Number of extensions: 1245373
Number of successful extensions: 3761
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3760
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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