ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl06b09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16 Length = 347137 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Plus Query: 160 gcgacgcacgccacctggcggcgccggc 187 ||||||| |||||||||||||||||||| Sbjct: 81976 gcgacgcgcgccacctggcggcgccggc 82003
>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14 Length = 349305 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Plus Query: 160 gcgacgcacgccacctggcggcgccggc 187 ||||||| |||||||||||||||||||| Sbjct: 18459 gcgacgcgcgccacctggcggcgccggc 18486
>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12 Length = 349346 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Plus Query: 160 gcgacgcacgccacctggcggcgccggc 187 ||||||| |||||||||||||||||||| Sbjct: 82034 gcgacgcgcgccacctggcggcgccggc 82061
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 176 ggcggcgccggcggtgcgcggcgg 199 |||||||||||||||||||||||| Sbjct: 663592 ggcggcgccggcggtgcgcggcgg 663569 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ggcggcgccggcggtgcgcg 195 |||||||||||||||||||| Sbjct: 2856875 ggcggcgccggcggtgcgcg 2856856 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 cggtgcgcggcggggacgac 206 |||||||||||||||||||| Sbjct: 109643 cggtgcgcggcggggacgac 109662
>gb|AC158763.6| Mus musculus chromosome 18, clone RP23-343L17, complete sequence Length = 204022 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 55 actctcccctcctccccaaaac 76 |||||||||||||||||||||| Sbjct: 85896 actctcccctcctccccaaaac 85917
>dbj|AK169985.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630006L19 product:unclassifiable, full insert sequence Length = 2620 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 55 actctcccctcctccccaaaac 76 |||||||||||||||||||||| Sbjct: 655 actctcccctcctccccaaaac 676
>dbj|AK079263.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530065A06 product:unclassifiable, full insert sequence Length = 2816 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 55 actctcccctcctccccaaaac 76 |||||||||||||||||||||| Sbjct: 76 actctcccctcctccccaaaac 97
>dbj|AK053330.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130010B03 product:unclassifiable, full insert sequence Length = 2570 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 55 actctcccctcctccccaaaac 76 |||||||||||||||||||||| Sbjct: 641 actctcccctcctccccaaaac 662
>ref|XM_235710.3| PREDICTED: Rattus norvegicus tensin like C1 domain containing phosphatase (predicted) (Tenc1_predicted), mRNA Length = 4958 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 376 atagtcaggcactggagcatgg 397 |||||||||||||||||||||| Sbjct: 2616 atagtcaggcactggagcatgg 2595
>ref|XM_470350.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1434 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 176 ggcggcgccggcggtgcgcggcggg 200 |||||||||||||| |||||||||| Sbjct: 423 ggcggcgccggcggcgcgcggcggg 399
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 176 ggcggcgccggcggtgcgcggcggg 200 |||||||||||||| |||||||||| Sbjct: 34895219 ggcggcgccggcggcgcgcggcggg 34895195 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 cctccccaaaacctctcgcg 84 |||||||||||||||||||| Sbjct: 9959162 cctccccaaaacctctcgcg 9959181
>emb|AL445650.9| Human DNA sequence from clone RP11-152K20 on chromosome 1 Contains the 5' end of the USH2A gene for Usher syndrome 2A (autosomal recessive, mild) and the 3' end of the ESRRG gene for estrogen-related receptor gamma, complete sequence Length = 153705 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 agctacaaatcaggaaaatat 377 ||||||||||||||||||||| Sbjct: 31568 agctacaaatcaggaaaatat 31588
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 176 ggcggcgccggcggtgcgcggcggg 200 |||||||||||||| |||||||||| Sbjct: 34985291 ggcggcgccggcggcgcgcggcggg 34985267 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 cctccccaaaacctctcgcg 84 |||||||||||||||||||| Sbjct: 9957283 cctccccaaaacctctcgcg 9957302
>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence Length = 171376 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 176 ggcggcgccggcggtgcgcggcggg 200 |||||||||||||| |||||||||| Sbjct: 120261 ggcggcgccggcggcgcgcggcggg 120285
>ref|XM_465744.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2862 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 gtttatgagaagaatccacg 424 |||||||||||||||||||| Sbjct: 310 gtttatgagaagaatccacg 329
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 cggcggcgcggggccggctc 243 |||||||||||||||||||| Sbjct: 3499997 cggcggcgcggggccggctc 3499978
>gb|AC159817.2| Mus musculus BAC clone RP23-228E8 from chromosome 9, complete sequence Length = 193445 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 ctcttgcacatcagagctac 362 |||||||||||||||||||| Sbjct: 33416 ctcttgcacatcagagctac 33435
>gb|AC161587.2| Mus musculus BAC clone RP24-492G17 from chromosome 9, complete sequence Length = 176237 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 ctcttgcacatcagagctac 362 |||||||||||||||||||| Sbjct: 167395 ctcttgcacatcagagctac 167414
>gb|AC113104.15| Mus musculus chromosome 18, clone RP23-321L15, complete sequence Length = 207418 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 cctgctgccccctgtgtcct 291 |||||||||||||||||||| Sbjct: 79557 cctgctgccccctgtgtcct 79576
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 tcggtgttaatgaagaggac 335 |||||||||||||||||||| Sbjct: 2960579 tcggtgttaatgaagaggac 2960598
>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence Length = 236455 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ggcggcgcggggccggctcc 244 |||||||||||||||||||| Sbjct: 57423 ggcggcgcggggccggctcc 57404
>ref|XM_745837.1| Aspergillus fumigatus Af293 hypothetical protein (Afu6g10420) partial mRNA Length = 2181 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 acatcagagctacaaatcag 369 |||||||||||||||||||| Sbjct: 1732 acatcagagctacaaatcag 1751
>ref|XM_548464.2| PREDICTED: Canis familiaris similar to Zinc finger protein 482 (Zinc finger and BTB domain containing protein 6) (Zinc finger protein with interaction domain) (LOC491343), mRNA Length = 1419 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 cggtgtcagcggcggcgcgg 234 |||||||||||||||||||| Sbjct: 55 cggtgtcagcggcggcgcgg 36
>gb|AC137075.2| Genomic sequence for Oryza sativa, Nipponbare striain, clone OSJNBb0027B12, from chromosome 3, complete sequence Length = 127426 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 cctccccaaaacctctcgcg 84 |||||||||||||||||||| Sbjct: 9078 cctccccaaaacctctcgcg 9097
>emb|AL161781.12| Human DNA sequence from clone RP11-297B17 on chromosome 9 Contains the 5' end of the PAX5 gene for paired box gene 5 (B-cell lineage specific activator protein) (BSAP), a ribosomal protein L32 (RPL32) pseudogene and five CpG islands, complete sequence Length = 159096 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tcccctcctccccaaaacct 78 |||||||||||||||||||| Sbjct: 108193 tcccctcctccccaaaacct 108212
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 ggcgccggcggtgcgcggcg 198 |||||||||||||||||||| Sbjct: 88138 ggcgccggcggtgcgcggcg 88157
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 ggcgccggcggtgcgcggcg 198 |||||||||||||||||||| Sbjct: 11181 ggcgccggcggtgcgcggcg 11200
>ref|NM_141691.1| Drosophila melanogaster CG8500-RA (CG8500), mRNA Length = 3412 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 ggggccagcgccagcggcgg 267 |||||||||||||||||||| Sbjct: 885 ggggccagcgccagcggcgg 904
>gb|AC007431.8| Homo sapiens chromosome 17, clone RP11-118E18, complete sequence Length = 166518 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 tccccaatccccgcaagtggagag 34 |||||| ||||||||||||||||| Sbjct: 70352 tccccactccccgcaagtggagag 70375
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 aggggccagcgccagcggcg 266 |||||||||||||||||||| Sbjct: 1939701 aggggccagcgccagcggcg 1939720
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 gtttatgagaagaatccacg 424 |||||||||||||||||||| Sbjct: 17156849 gtttatgagaagaatccacg 17156830
>gb|AC008316.3|AC008316 Drosophila melanogaster, chromosome 3R, region 85F-85F, BAC clone BACR23O04, complete sequence Length = 160817 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 ggggccagcgccagcggcgg 267 |||||||||||||||||||| Sbjct: 61398 ggggccagcgccagcggcgg 61417
>gb|AC008315.9|AC008315 Drosophila melanogaster, chromosome 3R, region 85E-85E, BAC clone BACR30F01, complete sequence Length = 177028 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 ggggccagcgccagcggcgg 267 |||||||||||||||||||| Sbjct: 168551 ggggccagcgccagcggcgg 168570
>gb|BT024201.1| Drosophila melanogaster RE46661 full insert cDNA Length = 3408 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 ggggccagcgccagcggcgg 267 |||||||||||||||||||| Sbjct: 883 ggggccagcgccagcggcgg 902
>gb|AC137074.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0022M22, from chromosome 3, complete sequence Length = 124166 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 cctccccaaaacctctcgcg 84 |||||||||||||||||||| Sbjct: 121551 cctccccaaaacctctcgcg 121570
>dbj|AP004837.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0483C08 Length = 143855 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 gtttatgagaagaatccacg 424 |||||||||||||||||||| Sbjct: 138222 gtttatgagaagaatccacg 138203
>dbj|AP004864.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0048K16 Length = 159891 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 gtttatgagaagaatccacg 424 |||||||||||||||||||| Sbjct: 27616 gtttatgagaagaatccacg 27597
>emb|AJ271460.1|CRE271460 Chlamydomonas reinhardtii mRNA for chloroplast TPR protein (nac2 gene) Length = 5034 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 ggcgccggcggtgcgcggcg 198 |||||||||||||||||||| Sbjct: 3923 ggcgccggcggtgcgcggcg 3942
>dbj|AK107636.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-E09, full insert sequence Length = 1428 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 gtttatgagaagaatccacg 424 |||||||||||||||||||| Sbjct: 44 gtttatgagaagaatccacg 63
>gb|AE003684.4| Drosophila melanogaster chromosome 3R, section 22 of 118 of the complete sequence Length = 214323 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 ggggccagcgccagcggcgg 267 |||||||||||||||||||| Sbjct: 81121 ggggccagcgccagcggcgg 81140
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 gcggcggctttcctgctgcc 280 |||||||||||||||||||| Sbjct: 1685918 gcggcggctttcctgctgcc 1685937
>emb|AL645987.7| Mouse DNA sequence from clone RP23-27B20 on chromosome 11 Contains a eukaryotic translation initiation factor 3, subunit 2 (beta) (Eif3s2) pseudogene, a novel protein (MOR256-1) similar to the olfactory receptor family and a novel protein (MOR256-28) similar to the olfactory receptor family, complete sequence Length = 99868 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gcactggagcatggaaatgc 403 |||||||||||||||||||| Sbjct: 75965 gcactggagcatggaaatgc 75984
>gb|AY823670.1| Mus musculus 2010007H12Rik (2010007H12Rik), BIPL1 (Bipl1), ZCWPW1 (Zcwpw1), and PILRA (Pilra) genes, complete cds; PILRP5 (Pilrp5) pseudogene, complete sequence; PILRB (Pilrb) gene, complete cds; PILRP4 (Pilrp4) pseudogene, complete sequence; PILRB2 (Pilrb2) gene, complete cds; PILRP3 (Pilrp3), PILRP2 (Pilrp2), and PILRP1 (Pilrp1) pseudogenes, complete sequence; and CYP3A13 (Cyp3a13) and GJE1 (Gje1) genes, complete cds Length = 194414 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 agcggcggcgcggggccggc 241 |||||||||||||||||||| Sbjct: 13015 agcggcggcgcggggccggc 13034 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,366,078 Number of Sequences: 3902068 Number of extensions: 3366078 Number of successful extensions: 90428 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89206 Number of HSP's gapped (non-prelim): 1222 length of query: 424 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 402 effective length of database: 17,147,199,772 effective search space: 6893174308344 effective search space used: 6893174308344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
